Ggra5184.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5184.t1
Unique Name	Ggra5184.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	789

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:700626..702992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	2.95e-78
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5184	Ggra5184	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 700626..702992 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5184.t1.start1	Ggra5184.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 700626..700628 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5184.t1.CDS1	Ggra5184.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 700626..702992 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5184.t1.exon1	Ggra5184.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 700626..702992 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5184.t1.stop1	Ggra5184.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 702990..702992 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5184.t1	Ggra5184.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 700626..702992 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:700626..702992+
coding sequence from alignment at tig00000069_pilon:700626..702992+

mRNA sequence

>Ggra5184.t1 ID=Ggra5184.t1|Name=Ggra5184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp
MPELDSQTWGLILNLCVGTATVLICLIAFDILRRRVPSVFEARRALNNAR
LRLDYFGNRVYSPPPPSYRLLGWLAPLIRIELDTVAVTHGLDTALFLRYL
RTMAALFLLMSVPALALLVIFKTADFLSNSDSDTVGVQMFSLSNVDPKDK
WRFWVVLAVDYLILIFTCHVIYREFQVYTKHRKSYRASSNPANYALVVQD
IPHQSCSEQAIYDYWNALLPNKVARVFFVRDASKLVTKHQKFWIAVKKRE
RAEWDLHFNDKLQGRRPTHKVGFCSCCRGSSTAVDSINYWAEQQHHYANK
ITLYQQPTSVDYSPPTRAAIVVFTSRRAASDAAQVYFARVPNEWRVERAS
EPKAVNWPAFGIPGWQTGIRSTITIFSSMLLVLFWIIPVTFIMSLTNLQQ
LADLEIRGQTPFSFLDGVEDWLPALNGFIESFLPAIILSVFLSLIPTFFR
KFVSISRVSSVAKIDMYIRDWYFTFVVFSNFLFVIVAGSLLDKLVEIIQE
PGKAAEFLAAAAPKQGAFMMNFILLKALSETPKEILQLGRVIVRAIFLKY
FARTTREKNDVETGSTVFQFYRYYGMAQLVALLGFIYSTIAPFIIPIAFV
YFAVMYLVWKYNLCFSLHNEYEDGGRMYGGALYALWVSMFLHYVTMIGIF
GVNENPAQTVLVVLPAVISVVFLFHCRRRFLTVCEHGSVLETQIVVDEQD
GDDMIPDELTAKYLHPGFEPLPDPIENLNGVDDKTGERTPELQEDVEMGP
TPAPAKKGLEQPPQNSVSSEEWKDAFGTAPLDENIHPP*

spliced messenger RNA

>Ggra5184.t1 ID=Ggra5184.t1|Name=Ggra5184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2367bp|location=Sequence derived from alignment at tig00000069_pilon:700626..702992+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGAGTTGGACAGCCAGACATGGGGTCTCATCCTCAATCTCTGCGT
CGGAACTGCCACCGTACTGATATGTCTCATCGCCTTCGACATCCTCCGTC
GCAGAGTGCCGTCCGTCTTCGAGGCTCGTCGCGCCTTGAACAACGCCCGA
TTACGCCTCGACTACTTTGGCAATCGCGTGTATAGTCCGCCTCCCCCTTC
GTACCGCTTGCTAGGATGGCTCGCTCCACTCATTCGAATCGAGCTGGACA
CCGTTGCCGTTACGCATGGTCTCGATACTGCTCTGTTTCTGCGATACTTG
CGAACCATGGCCGCCTTGTTTTTGCTCATGTCTGTACCGGCACTTGCGCT
TTTGGTCATATTTAAAACCGCCGATTTTCTTTCCAACTCCGACTCTGATA
CCGTGGGAGTTCAGATGTTCTCGCTTTCCAACGTCGATCCGAAAGACAAA
TGGAGGTTCTGGGTCGTTCTGGCCGTGGATTATCTCATTCTTATTTTCAC
CTGCCACGTCATATATCGAGAGTTTCAAGTCTATACCAAGCATCGCAAGA
GCTACCGTGCCTCCAGTAATCCTGCCAATTACGCACTCGTCGTTCAGGAT
ATTCCACACCAGAGCTGTTCCGAACAAGCTATTTACGACTATTGGAACGC
TCTTTTACCCAATAAGGTCGCCAGAGTCTTCTTCGTGCGAGACGCTTCTA
AACTCGTTACCAAACATCAAAAGTTTTGGATCGCCGTGAAAAAGAGAGAG
CGTGCTGAATGGGATCTTCATTTCAATGACAAGCTGCAAGGCAGACGACC
CACGCACAAGGTTGGCTTCTGTTCTTGTTGTCGTGGCTCTTCTACCGCTG
TTGATTCTATAAATTATTGGGCCGAACAACAACACCATTATGCCAATAAG
ATAACTCTTTATCAACAACCAACAAGCGTCGATTATTCCCCTCCAACCAG
AGCGGCCATCGTTGTTTTCACATCTCGCAGAGCCGCAAGTGATGCTGCAC
AAGTCTATTTTGCTCGTGTACCCAACGAATGGCGAGTCGAACGCGCTTCG
GAGCCAAAAGCTGTCAACTGGCCAGCTTTTGGCATTCCGGGTTGGCAAAC
AGGTATACGAAGTACCATCACCATCttcagttctatgctgcttgttctgt
tctgGATTATTCCCGTCACATTCATCATGAGTTTGACCAATCTGCAGCAG
CTTGCCGACCTTGAAATTCGAGGCCAAACTCCATTTTCGTTCCTGGACGG
CGTTGAAGATTGGTTGCCGGCGCTCAATGGCTTTATTGAAAGTTTCTTGC
CTGCCATTATTCTGTCTGTGTTTCTGAGTCTGATACCGACTTTCTTTCGC
AAGTTTGTGTCTATATCCAGGGTTTCTTCAGTTGCCAAGATTGACATGTA
TATCAGGGATTGGTACTTCACCTTTGTTGTATTTTCTAATTTTCTGTTTG
TCATCGTCGCGGGATCACTGTTAGACAAGCTTGTTGAAATCATTCAAGAA
CCAGGCAAAGCTGCCGAGTTTCTTGCGGCCGCCGCACCGAAGCAAGGTGC
ATTCATGATGAATTTCATTCTTCTGAAAGCGCTTTCGGAAACGCCGAAAG
AAATCCTTCAGCTCGGGCGAGTGATCGTTCGCGCCATATTCCTCAAGTAC
TTTGCGCGTACAACTCGCGAGAAGAATGATGTCGAGACCGGTTCCACCGT
CTTCCAATTCTATCGCTACTACGGCATGGCGCAGCTAGTGGCGCTTCTTG
GTTTTATATACAGCACGATCGCTCCTTTTATTATTCCCATAGCATTTGTG
TACTTTGCTGTCATGTACCTGGTGTGGAAATATAACCTGTGCTTCTCATT
GCATAACGAATACGAGGATGGCGGTCGTATGTATGGTGGAGCTCTCTACG
CGCTATGGGTGAGCATGTTCTTGCACTACGTGACAATGATTGGAATCTTC
GGAGTGAATGAGAACCCGGCGCAGACTGTTTTGGTCGTACTCCCAGCCGT
TATTTCCGTGGTGTTCTTGTTTCACTGTCGTAGAAGGTTCCTGACAGTTT
GCGAGCATGGTTCCGTTCTCGAGACTCAGATTGTTGTGGACGAACAAGAC
GGCGATGACATGATCCCTGATGAACTTACTGCAAAGTATTTACACCCAGG
ATTCGAACCTTTGCCAGACCCAATAGAGAATCTCAACGGAGTGGACGACA
AGACTGGTGAAAGAACTCCTGAACTCCAAGAGGACGTAGAAATGGGCCCG
ACTCCTGCTCCTGCCAAGAAAGGATTAGAGCAACCCCCTCAAAACTCAGT
TTCAAGCGAGGAATGGAAAGATGCGTTCGGGACAGCTCCTCTTGACGAGA
ACATCCATCCTCCATGA

protein sequence of Ggra5184.t1

>Ggra5184.t1 ID=Ggra5184.t1|Name=Ggra5184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=789bp
MPELDSQTWGLILNLCVGTATVLICLIAFDILRRRVPSVFEARRALNNAR
LRLDYFGNRVYSPPPPSYRLLGWLAPLIRIELDTVAVTHGLDTALFLRYL
RTMAALFLLMSVPALALLVIFKTADFLSNSDSDTVGVQMFSLSNVDPKDK
WRFWVVLAVDYLILIFTCHVIYREFQVYTKHRKSYRASSNPANYALVVQD
IPHQSCSEQAIYDYWNALLPNKVARVFFVRDASKLVTKHQKFWIAVKKRE
RAEWDLHFNDKLQGRRPTHKVGFCSCCRGSSTAVDSINYWAEQQHHYANK
ITLYQQPTSVDYSPPTRAAIVVFTSRRAASDAAQVYFARVPNEWRVERAS
EPKAVNWPAFGIPGWQTGIRSTITIFSSMLLVLFWIIPVTFIMSLTNLQQ
LADLEIRGQTPFSFLDGVEDWLPALNGFIESFLPAIILSVFLSLIPTFFR
KFVSISRVSSVAKIDMYIRDWYFTFVVFSNFLFVIVAGSLLDKLVEIIQE
PGKAAEFLAAAAPKQGAFMMNFILLKALSETPKEILQLGRVIVRAIFLKY
FARTTREKNDVETGSTVFQFYRYYGMAQLVALLGFIYSTIAPFIIPIAFV
YFAVMYLVWKYNLCFSLHNEYEDGGRMYGGALYALWVSMFLHYVTMIGIF
GVNENPAQTVLVVLPAVISVVFLFHCRRRFLTVCEHGSVLETQIVVDEQD
GDDMIPDELTAKYLHPGFEPLPDPIENLNGVDDKTGERTPELQEDVEMGP
TPAPAKKGLEQPPQNSVSSEEWKDAFGTAPLDENIHPP*

mRNA from alignment at tig00000069_pilon:700626..702992+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5184.t1 ID=Ggra5184.t1|Name=Ggra5184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2367bp|location=Sequence derived from alignment at tig00000069_pilon:700626..702992+ (Gracilaria gracilis GNS1m male)
ATGCCCGAGTTGGACAGCCAGACATGGGGTCTCATCCTCAATCTCTGCGT
CGGAACTGCCACCGTACTGATATGTCTCATCGCCTTCGACATCCTCCGTC
GCAGAGTGCCGTCCGTCTTCGAGGCTCGTCGCGCCTTGAACAACGCCCGA
TTACGCCTCGACTACTTTGGCAATCGCGTGTATAGTCCGCCTCCCCCTTC
GTACCGCTTGCTAGGATGGCTCGCTCCACTCATTCGAATCGAGCTGGACA
CCGTTGCCGTTACGCATGGTCTCGATACTGCTCTGTTTCTGCGATACTTG
CGAACCATGGCCGCCTTGTTTTTGCTCATGTCTGTACCGGCACTTGCGCT
TTTGGTCATATTTAAAACCGCCGATTTTCTTTCCAACTCCGACTCTGATA
CCGTGGGAGTTCAGATGTTCTCGCTTTCCAACGTCGATCCGAAAGACAAA
TGGAGGTTCTGGGTCGTTCTGGCCGTGGATTATCTCATTCTTATTTTCAC
CTGCCACGTCATATATCGAGAGTTTCAAGTCTATACCAAGCATCGCAAGA
GCTACCGTGCCTCCAGTAATCCTGCCAATTACGCACTCGTCGTTCAGGAT
ATTCCACACCAGAGCTGTTCCGAACAAGCTATTTACGACTATTGGAACGC
TCTTTTACCCAATAAGGTCGCCAGAGTCTTCTTCGTGCGAGACGCTTCTA
AACTCGTTACCAAACATCAAAAGTTTTGGATCGCCGTGAAAAAGAGAGAG
CGTGCTGAATGGGATCTTCATTTCAATGACAAGCTGCAAGGCAGACGACC
CACGCACAAGGTTGGCTTCTGTTCTTGTTGTCGTGGCTCTTCTACCGCTG
TTGATTCTATAAATTATTGGGCCGAACAACAACACCATTATGCCAATAAG
ATAACTCTTTATCAACAACCAACAAGCGTCGATTATTCCCCTCCAACCAG
AGCGGCCATCGTTGTTTTCACATCTCGCAGAGCCGCAAGTGATGCTGCAC
AAGTCTATTTTGCTCGTGTACCCAACGAATGGCGAGTCGAACGCGCTTCG
GAGCCAAAAGCTGTCAACTGGCCAGCTTTTGGCATTCCGGGTTGGCAAAC
AGGTATACGAAGTACCATCACCATCttcagttctatgctgcttgttctgt
tctgGATTATTCCCGTCACATTCATCATGAGTTTGACCAATCTGCAGCAG
CTTGCCGACCTTGAAATTCGAGGCCAAACTCCATTTTCGTTCCTGGACGG
CGTTGAAGATTGGTTGCCGGCGCTCAATGGCTTTATTGAAAGTTTCTTGC
CTGCCATTATTCTGTCTGTGTTTCTGAGTCTGATACCGACTTTCTTTCGC
AAGTTTGTGTCTATATCCAGGGTTTCTTCAGTTGCCAAGATTGACATGTA
TATCAGGGATTGGTACTTCACCTTTGTTGTATTTTCTAATTTTCTGTTTG
TCATCGTCGCGGGATCACTGTTAGACAAGCTTGTTGAAATCATTCAAGAA
CCAGGCAAAGCTGCCGAGTTTCTTGCGGCCGCCGCACCGAAGCAAGGTGC
ATTCATGATGAATTTCATTCTTCTGAAAGCGCTTTCGGAAACGCCGAAAG
AAATCCTTCAGCTCGGGCGAGTGATCGTTCGCGCCATATTCCTCAAGTAC
TTTGCGCGTACAACTCGCGAGAAGAATGATGTCGAGACCGGTTCCACCGT
CTTCCAATTCTATCGCTACTACGGCATGGCGCAGCTAGTGGCGCTTCTTG
GTTTTATATACAGCACGATCGCTCCTTTTATTATTCCCATAGCATTTGTG
TACTTTGCTGTCATGTACCTGGTGTGGAAATATAACCTGTGCTTCTCATT
GCATAACGAATACGAGGATGGCGGTCGTATGTATGGTGGAGCTCTCTACG
CGCTATGGGTGAGCATGTTCTTGCACTACGTGACAATGATTGGAATCTTC
GGAGTGAATGAGAACCCGGCGCAGACTGTTTTGGTCGTACTCCCAGCCGT
TATTTCCGTGGTGTTCTTGTTTCACTGTCGTAGAAGGTTCCTGACAGTTT
GCGAGCATGGTTCCGTTCTCGAGACTCAGATTGTTGTGGACGAACAAGAC
GGCGATGACATGATCCCTGATGAACTTACTGCAAAGTATTTACACCCAGG
ATTCGAACCTTTGCCAGACCCAATAGAGAATCTCAACGGAGTGGACGACA
AGACTGGTGAAAGAACTCCTGAACTCCAAGAGGACGTAGAAATGGGCCCG
ACTCCTGCTCCTGCCAAGAAAGGATTAGAGCAACCCCCTCAAAACTCAGT
TTCAAGCGAGGAATGGAAAGATGCGTTCGGGACAGCTCCTCTTGACGAGA
ACATCCATCCTCCATGA

Coding sequence (CDS) from alignment at tig00000069_pilon:700626..702992+

>Ggra5184.t1 ID=Ggra5184.t1|Name=Ggra5184.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2367bp|location=Sequence derived from alignment at tig00000069_pilon:700626..702992+ (Gracilaria gracilis GNS1m male)
ATGCCCGAGTTGGACAGCCAGACATGGGGTCTCATCCTCAATCTCTGCGT
CGGAACTGCCACCGTACTGATATGTCTCATCGCCTTCGACATCCTCCGTC
GCAGAGTGCCGTCCGTCTTCGAGGCTCGTCGCGCCTTGAACAACGCCCGA
TTACGCCTCGACTACTTTGGCAATCGCGTGTATAGTCCGCCTCCCCCTTC
GTACCGCTTGCTAGGATGGCTCGCTCCACTCATTCGAATCGAGCTGGACA
CCGTTGCCGTTACGCATGGTCTCGATACTGCTCTGTTTCTGCGATACTTG
CGAACCATGGCCGCCTTGTTTTTGCTCATGTCTGTACCGGCACTTGCGCT
TTTGGTCATATTTAAAACCGCCGATTTTCTTTCCAACTCCGACTCTGATA
CCGTGGGAGTTCAGATGTTCTCGCTTTCCAACGTCGATCCGAAAGACAAA
TGGAGGTTCTGGGTCGTTCTGGCCGTGGATTATCTCATTCTTATTTTCAC
CTGCCACGTCATATATCGAGAGTTTCAAGTCTATACCAAGCATCGCAAGA
GCTACCGTGCCTCCAGTAATCCTGCCAATTACGCACTCGTCGTTCAGGAT
ATTCCACACCAGAGCTGTTCCGAACAAGCTATTTACGACTATTGGAACGC
TCTTTTACCCAATAAGGTCGCCAGAGTCTTCTTCGTGCGAGACGCTTCTA
AACTCGTTACCAAACATCAAAAGTTTTGGATCGCCGTGAAAAAGAGAGAG
CGTGCTGAATGGGATCTTCATTTCAATGACAAGCTGCAAGGCAGACGACC
CACGCACAAGGTTGGCTTCTGTTCTTGTTGTCGTGGCTCTTCTACCGCTG
TTGATTCTATAAATTATTGGGCCGAACAACAACACCATTATGCCAATAAG
ATAACTCTTTATCAACAACCAACAAGCGTCGATTATTCCCCTCCAACCAG
AGCGGCCATCGTTGTTTTCACATCTCGCAGAGCCGCAAGTGATGCTGCAC
AAGTCTATTTTGCTCGTGTACCCAACGAATGGCGAGTCGAACGCGCTTCG
GAGCCAAAAGCTGTCAACTGGCCAGCTTTTGGCATTCCGGGTTGGCAAAC
AGGTATACGAAGTACCATCACCATCttcagttctatgctgcttgttctgt
tctgGATTATTCCCGTCACATTCATCATGAGTTTGACCAATCTGCAGCAG
CTTGCCGACCTTGAAATTCGAGGCCAAACTCCATTTTCGTTCCTGGACGG
CGTTGAAGATTGGTTGCCGGCGCTCAATGGCTTTATTGAAAGTTTCTTGC
CTGCCATTATTCTGTCTGTGTTTCTGAGTCTGATACCGACTTTCTTTCGC
AAGTTTGTGTCTATATCCAGGGTTTCTTCAGTTGCCAAGATTGACATGTA
TATCAGGGATTGGTACTTCACCTTTGTTGTATTTTCTAATTTTCTGTTTG
TCATCGTCGCGGGATCACTGTTAGACAAGCTTGTTGAAATCATTCAAGAA
CCAGGCAAAGCTGCCGAGTTTCTTGCGGCCGCCGCACCGAAGCAAGGTGC
ATTCATGATGAATTTCATTCTTCTGAAAGCGCTTTCGGAAACGCCGAAAG
AAATCCTTCAGCTCGGGCGAGTGATCGTTCGCGCCATATTCCTCAAGTAC
TTTGCGCGTACAACTCGCGAGAAGAATGATGTCGAGACCGGTTCCACCGT
CTTCCAATTCTATCGCTACTACGGCATGGCGCAGCTAGTGGCGCTTCTTG
GTTTTATATACAGCACGATCGCTCCTTTTATTATTCCCATAGCATTTGTG
TACTTTGCTGTCATGTACCTGGTGTGGAAATATAACCTGTGCTTCTCATT
GCATAACGAATACGAGGATGGCGGTCGTATGTATGGTGGAGCTCTCTACG
CGCTATGGGTGAGCATGTTCTTGCACTACGTGACAATGATTGGAATCTTC
GGAGTGAATGAGAACCCGGCGCAGACTGTTTTGGTCGTACTCCCAGCCGT
TATTTCCGTGGTGTTCTTGTTTCACTGTCGTAGAAGGTTCCTGACAGTTT
GCGAGCATGGTTCCGTTCTCGAGACTCAGATTGTTGTGGACGAACAAGAC
GGCGATGACATGATCCCTGATGAACTTACTGCAAAGTATTTACACCCAGG
ATTCGAACCTTTGCCAGACCCAATAGAGAATCTCAACGGAGTGGACGACA
AGACTGGTGAAAGAACTCCTGAACTCCAAGAGGACGTAGAAATGGGCCCG
ACTCCTGCTCCTGCCAAGAAAGGATTAGAGCAACCCCCTCAAAACTCAGT
TTCAAGCGAGGAATGGAAAGATGCGTTCGGGACAGCTCCTCTTGACGAGA
ACATCCATCCTCCATGA