Ggra5178.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5178.t1
Unique Name	Ggra5178.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:687303..688724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5178	Ggra5178	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 687303..688724 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5178.t1.start1	Ggra5178.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 687303..687305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5178.t1.CDS1	Ggra5178.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 687303..688724 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5178.t1.exon1	Ggra5178.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 687303..688724 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5178.t1.stop1	Ggra5178.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 688722..688724 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5178.t1	Ggra5178.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 687303..688724 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:687303..688724+
coding sequence from alignment at tig00000069_pilon:687303..688724+

mRNA sequence

>Ggra5178.t1 ID=Ggra5178.t1|Name=Ggra5178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MKTQQRPTFCKVVISSILIVAAVRSVQSQNSEAPPPEAPPELEDGHTIFA
LSMSFTSVKLGFSIDVINAAKFLLSENVDIPLKNWVYTQGLVIDSSKSLF
FIKLDVVVPTEGAAEKEASATDFITSGKLDAEFAKLGLADMSFAITNEEA
ADSDVSLSQAPPSDLKQLVDAWPSLGEGEEFSHLLDLYVQSPTIFFPPVL
KEAIVWFVGNETDTLTEPPSWYMPELAVLNSTHGDYIATVVHTGAENKTD
AVVKQGAEYVASGGLSQALLDNGARDVNISLLPKVTLVKAESERRKARDE
VAVVLLFRMSAPISGITKEVVAVIKASCASATNTRESGWWVRQVAPEMEE
NENGPFKVDMGAVVAKTQRMETVRLVAGLVRSRKLDHDLWASGRHDILVR
LRPRMTKFKSNGSGGNAIRSTAATVAASIGGMLLIVVISGVILCLLPREG
NFGPVRSFLGQAEKSGKLWPFGR*

spliced messenger RNA

>Ggra5178.t1 ID=Ggra5178.t1|Name=Ggra5178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000069_pilon:687303..688724+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACACAACAACGCCCAACCTTTTGCAAGGTCGTCATAAGCAGCAT
TTTAATTGTGGCTGCGGTGAGAAGTGTGCAATCTCAGAATTCCGAAGCGC
CGCCTCCCGAAGCGCCTCCAGAACTTGAAGATGGTCACACAATCTTTGCT
TTATCGATGAGTTTCACGTCTGTGAAGCTCGGGTTTTCCATCGACGTCAT
AAACGCGGCCAAGTTTCTTCTTTCGGAGAATGTTGATATACCACTGAAAA
ACTGGGTGTATACGCAGGGCTTGGTTATTGATAGTTCAAAGTCTTTGTTC
TTTATCAAGTTGGACGTCGTTGTACCCACCGAGGGAGCTGCAGAAAAGGA
AGCTTCAGCCACAGATTTCATCACAAGCGGCAAACTGGATGCAGAATTTG
CCAAACTGGGGTTGGCGGACATGTCGTTCGCAATAACGAATGAAGAAGCG
GCTGATAGCGACGTCAGTCTTTCGCAAGCGCCACCGTCCGATCTTAAGCA
ACTTGTAGACGCGTGGCCCAGCCTCGGGGAAGGCGAAGAATTCTCGCATC
TGCTTGATCTGTACGTACAATCTCCAACCATCTTCTTCCCGCCAGTGCTC
AAGGAAGCTATTGTGTGGTTTGTCGGGAATGAGACAGACACTTTGACTGA
GCCGCCAAGCTGGTACATGCCCGAGCTGGCGGTGCTCAACTCGACACATG
GGGATTACATTGCCACTGTGGTGCATACTGGAGCCGAGAACAAAACTGAC
GCGGTGGTGAAACAGGGCGCGGAGTATGTTGCAAGCGGCGGACTGTCCCA
AGCGCTACTCGACAATGGCGCGCGCGATGTGAATATCAGCTTGCTTCCAA
AAGTGACTCTGGTGAAGGCCGAAAGCGAGCGGCGCAAAGCGCGAGACGAG
GTGGCGGTTGTGTTGCTGTTTCGCATGTCCGCACCGATTAGCGGGATCAC
AAAGGAGGTGGTGGCGGTCATAAAGGCATCATGTGCCTCTGCGACAAACA
CGCGCGAGAGTGGGTGGTGGGTGCGACAAGTGGCTCCAGAGATGGAAGAA
AACGAGAACGGGCCGTTCAAAGTGGACATGGGAGCGGTGGTAGCCAAGAC
GCAACGAATGGAGACGGTTCGACTTGTAGCGGGTCTGGTTCGGTCAAGAA
AGCTGGATCACGACTTGTGGGCGTCTGGACGACACGATATTCTGGTGCGA
CTGCGACCGAGAATGACGAAGTTCAAGTCGAACGGGAGTGGAGGCAATGC
GATTCGGTCGACGGCGGCGACAGTGGCGGCTAGTATTGGTGGGATGTTGC
TGATCGTTGTGATCAGTGGGGTGATTCTTTGTTTACTGCCGAGGGAAGGC
AACTTTGGGCCCGTGCGTAGCTTTCTCGGACAGGCTGAGAAAAGTGGCAA
ACTGTGGCCATTCGGAAGATGA

protein sequence of Ggra5178.t1

>Ggra5178.t1 ID=Ggra5178.t1|Name=Ggra5178.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MKTQQRPTFCKVVISSILIVAAVRSVQSQNSEAPPPEAPPELEDGHTIFA
LSMSFTSVKLGFSIDVINAAKFLLSENVDIPLKNWVYTQGLVIDSSKSLF
FIKLDVVVPTEGAAEKEASATDFITSGKLDAEFAKLGLADMSFAITNEEA
ADSDVSLSQAPPSDLKQLVDAWPSLGEGEEFSHLLDLYVQSPTIFFPPVL
KEAIVWFVGNETDTLTEPPSWYMPELAVLNSTHGDYIATVVHTGAENKTD
AVVKQGAEYVASGGLSQALLDNGARDVNISLLPKVTLVKAESERRKARDE
VAVVLLFRMSAPISGITKEVVAVIKASCASATNTRESGWWVRQVAPEMEE
NENGPFKVDMGAVVAKTQRMETVRLVAGLVRSRKLDHDLWASGRHDILVR
LRPRMTKFKSNGSGGNAIRSTAATVAASIGGMLLIVVISGVILCLLPREG
NFGPVRSFLGQAEKSGKLWPFGR*

mRNA from alignment at tig00000069_pilon:687303..688724+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5178.t1 ID=Ggra5178.t1|Name=Ggra5178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000069_pilon:687303..688724+ (Gracilaria gracilis GNS1m male)
ATGAAAACACAACAACGCCCAACCTTTTGCAAGGTCGTCATAAGCAGCAT
TTTAATTGTGGCTGCGGTGAGAAGTGTGCAATCTCAGAATTCCGAAGCGC
CGCCTCCCGAAGCGCCTCCAGAACTTGAAGATGGTCACACAATCTTTGCT
TTATCGATGAGTTTCACGTCTGTGAAGCTCGGGTTTTCCATCGACGTCAT
AAACGCGGCCAAGTTTCTTCTTTCGGAGAATGTTGATATACCACTGAAAA
ACTGGGTGTATACGCAGGGCTTGGTTATTGATAGTTCAAAGTCTTTGTTC
TTTATCAAGTTGGACGTCGTTGTACCCACCGAGGGAGCTGCAGAAAAGGA
AGCTTCAGCCACAGATTTCATCACAAGCGGCAAACTGGATGCAGAATTTG
CCAAACTGGGGTTGGCGGACATGTCGTTCGCAATAACGAATGAAGAAGCG
GCTGATAGCGACGTCAGTCTTTCGCAAGCGCCACCGTCCGATCTTAAGCA
ACTTGTAGACGCGTGGCCCAGCCTCGGGGAAGGCGAAGAATTCTCGCATC
TGCTTGATCTGTACGTACAATCTCCAACCATCTTCTTCCCGCCAGTGCTC
AAGGAAGCTATTGTGTGGTTTGTCGGGAATGAGACAGACACTTTGACTGA
GCCGCCAAGCTGGTACATGCCCGAGCTGGCGGTGCTCAACTCGACACATG
GGGATTACATTGCCACTGTGGTGCATACTGGAGCCGAGAACAAAACTGAC
GCGGTGGTGAAACAGGGCGCGGAGTATGTTGCAAGCGGCGGACTGTCCCA
AGCGCTACTCGACAATGGCGCGCGCGATGTGAATATCAGCTTGCTTCCAA
AAGTGACTCTGGTGAAGGCCGAAAGCGAGCGGCGCAAAGCGCGAGACGAG
GTGGCGGTTGTGTTGCTGTTTCGCATGTCCGCACCGATTAGCGGGATCAC
AAAGGAGGTGGTGGCGGTCATAAAGGCATCATGTGCCTCTGCGACAAACA
CGCGCGAGAGTGGGTGGTGGGTGCGACAAGTGGCTCCAGAGATGGAAGAA
AACGAGAACGGGCCGTTCAAAGTGGACATGGGAGCGGTGGTAGCCAAGAC
GCAACGAATGGAGACGGTTCGACTTGTAGCGGGTCTGGTTCGGTCAAGAA
AGCTGGATCACGACTTGTGGGCGTCTGGACGACACGATATTCTGGTGCGA
CTGCGACCGAGAATGACGAAGTTCAAGTCGAACGGGAGTGGAGGCAATGC
GATTCGGTCGACGGCGGCGACAGTGGCGGCTAGTATTGGTGGGATGTTGC
TGATCGTTGTGATCAGTGGGGTGATTCTTTGTTTACTGCCGAGGGAAGGC
AACTTTGGGCCCGTGCGTAGCTTTCTCGGACAGGCTGAGAAAAGTGGCAA
ACTGTGGCCATTCGGAAGATGA

Coding sequence (CDS) from alignment at tig00000069_pilon:687303..688724+

>Ggra5178.t1 ID=Ggra5178.t1|Name=Ggra5178.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000069_pilon:687303..688724+ (Gracilaria gracilis GNS1m male)
ATGAAAACACAACAACGCCCAACCTTTTGCAAGGTCGTCATAAGCAGCAT
TTTAATTGTGGCTGCGGTGAGAAGTGTGCAATCTCAGAATTCCGAAGCGC
CGCCTCCCGAAGCGCCTCCAGAACTTGAAGATGGTCACACAATCTTTGCT
TTATCGATGAGTTTCACGTCTGTGAAGCTCGGGTTTTCCATCGACGTCAT
AAACGCGGCCAAGTTTCTTCTTTCGGAGAATGTTGATATACCACTGAAAA
ACTGGGTGTATACGCAGGGCTTGGTTATTGATAGTTCAAAGTCTTTGTTC
TTTATCAAGTTGGACGTCGTTGTACCCACCGAGGGAGCTGCAGAAAAGGA
AGCTTCAGCCACAGATTTCATCACAAGCGGCAAACTGGATGCAGAATTTG
CCAAACTGGGGTTGGCGGACATGTCGTTCGCAATAACGAATGAAGAAGCG
GCTGATAGCGACGTCAGTCTTTCGCAAGCGCCACCGTCCGATCTTAAGCA
ACTTGTAGACGCGTGGCCCAGCCTCGGGGAAGGCGAAGAATTCTCGCATC
TGCTTGATCTGTACGTACAATCTCCAACCATCTTCTTCCCGCCAGTGCTC
AAGGAAGCTATTGTGTGGTTTGTCGGGAATGAGACAGACACTTTGACTGA
GCCGCCAAGCTGGTACATGCCCGAGCTGGCGGTGCTCAACTCGACACATG
GGGATTACATTGCCACTGTGGTGCATACTGGAGCCGAGAACAAAACTGAC
GCGGTGGTGAAACAGGGCGCGGAGTATGTTGCAAGCGGCGGACTGTCCCA
AGCGCTACTCGACAATGGCGCGCGCGATGTGAATATCAGCTTGCTTCCAA
AAGTGACTCTGGTGAAGGCCGAAAGCGAGCGGCGCAAAGCGCGAGACGAG
GTGGCGGTTGTGTTGCTGTTTCGCATGTCCGCACCGATTAGCGGGATCAC
AAAGGAGGTGGTGGCGGTCATAAAGGCATCATGTGCCTCTGCGACAAACA
CGCGCGAGAGTGGGTGGTGGGTGCGACAAGTGGCTCCAGAGATGGAAGAA
AACGAGAACGGGCCGTTCAAAGTGGACATGGGAGCGGTGGTAGCCAAGAC
GCAACGAATGGAGACGGTTCGACTTGTAGCGGGTCTGGTTCGGTCAAGAA
AGCTGGATCACGACTTGTGGGCGTCTGGACGACACGATATTCTGGTGCGA
CTGCGACCGAGAATGACGAAGTTCAAGTCGAACGGGAGTGGAGGCAATGC
GATTCGGTCGACGGCGGCGACAGTGGCGGCTAGTATTGGTGGGATGTTGC
TGATCGTTGTGATCAGTGGGGTGATTCTTTGTTTACTGCCGAGGGAAGGC
AACTTTGGGCCCGTGCGTAGCTTTCTCGGACAGGCTGAGAAAAGTGGCAA
ACTGTGGCCATTCGGAAGATGA