Ggra5176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5176.t1
Unique Name	Ggra5176.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:683249..684106 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ23715
PFAMs	NAD_binding_10
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0016020,GO:0031090,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050896,GO:0071944,GO:0097305,GO:0098588,GO:0098805,GO:1901700
Evalue	1.89e-75
EggNOG OGs	COG0702@1\|root,KOG1203@2759\|Eukaryota,37HNJ@33090\|Viridiplantae,3GFYD@35493\|Streptophyta
Description	NAD(P)-binding Rossmann-fold superfamily protein
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5176	Ggra5176	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 683249..684106 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5176.t1.stop1	Ggra5176.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 683249..683251 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5176.t1.CDS1	Ggra5176.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 683249..684106 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5176.t1.exon1	Ggra5176.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 683249..684106 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5176.t1.start1	Ggra5176.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 684104..684106 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5176.t1	Ggra5176.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 683249..684106 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:683249..684106-
coding sequence from alignment at tig00000069_pilon:683249..684106-

mRNA sequence

>Ggra5176.t1 ID=Ggra5176.t1|Name=Ggra5176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MAFITSTPLIGAPSNSTSNSNRCRSFGRPHSATMTLDVILTGAAGRTGRI
VFEKLRSDPSSFSVTGLVRNLEAASEIFGSTDNLVQGDITKPETLEKPFT
GKEALIILTSAVPRLIPAPEGSPPQFKYDENGMPEFIDWLGSKNQIDTAM
RLGLKHIILVGSMGSTDDNNPLNRLGNGNILRFKRKAELYLIESGIPYTI
INPAGLSNEPEQERELVVGRNDDLFTVFEKGQCSIPRADVARVVVSALLA
PNSKKKAMDVAARPKGDGSITESPVPLFDLVGSQI*

spliced messenger RNA

>Ggra5176.t1 ID=Ggra5176.t1|Name=Ggra5176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000069_pilon:683249..684106- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCATCACCTCCACACCTCTTATTGGCGCGCCATCAAACTCAAC
TTCCAACTCAAACCGCTGTCGCAGTTTTGGTCGCCCTCATTCCGCCACAA
TGACCCTCGATGTTATTCTCACAGGTGCGGCTGGTCGCACCGGTCGTATT
GTTTTCGAGAAATTGCGATCCGATCCATCTAGCTTTTCCGTCACAGGATT
AGTACGAAACCTTGAAGCAGCCAGTGAGATATTCGGCTCCACTGACAACT
TGGTCCAAGGAGACATAACCAAGCCCGAAACATTAGAGAAGCCTTTCACT
GGAAAGGAAGCTCTCATAATCCTTACAAGTGCTGTACCAAGGCTCATTCC
CGCTCCAGAGGGAAGCCCCCCTCAGTTCAAATACGATGAGAATGGTATGC
CAGAGTTTATCGACTGGCTAGGCTCGAAGAATCAGATAGACACTGCCATG
CGTTTGGGCTTGAAACACATCATACTGGTCGGATCAATGGGCAGCACTGA
TGACAACAACCCTCTCAATCGCCTTGGAAACGGAAATATTCTAAGGTTTA
AGAGAAAAGCAGAGCTCTATCTTATCGAATCTGGTATTCCCTACACAATA
ATTAATCCGGCGGGATTGTCAAACGAACCTGAGCAAGAGCGAGAACTTGT
TGTCGGTAGAAATGATGACTTGTTCACTGTCTTCGAAAAAGGCCAATGTT
CAATTCCGCGAGCAGATGTTGCACGAGTCGTAGTCTCGGCTCTCCTTGCT
CCCAATTCAAAGAAGAAGGCCATGGACGTAGCAGCAAGACCAAAAGGTGA
TGGTTCCATAACCGAAAGCCCAGTCCCTCTATTCGACTTGGTCGGCTCAC
AGATCTAA

protein sequence of Ggra5176.t1

>Ggra5176.t1 ID=Ggra5176.t1|Name=Ggra5176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MAFITSTPLIGAPSNSTSNSNRCRSFGRPHSATMTLDVILTGAAGRTGRI
VFEKLRSDPSSFSVTGLVRNLEAASEIFGSTDNLVQGDITKPETLEKPFT
GKEALIILTSAVPRLIPAPEGSPPQFKYDENGMPEFIDWLGSKNQIDTAM
RLGLKHIILVGSMGSTDDNNPLNRLGNGNILRFKRKAELYLIESGIPYTI
INPAGLSNEPEQERELVVGRNDDLFTVFEKGQCSIPRADVARVVVSALLA
PNSKKKAMDVAARPKGDGSITESPVPLFDLVGSQI*

mRNA from alignment at tig00000069_pilon:683249..684106-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5176.t1 ID=Ggra5176.t1|Name=Ggra5176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000069_pilon:683249..684106- (Gracilaria gracilis GNS1m male)
ATGGCATTCATCACCTCCACACCTCTTATTGGCGCGCCATCAAACTCAAC
TTCCAACTCAAACCGCTGTCGCAGTTTTGGTCGCCCTCATTCCGCCACAA
TGACCCTCGATGTTATTCTCACAGGTGCGGCTGGTCGCACCGGTCGTATT
GTTTTCGAGAAATTGCGATCCGATCCATCTAGCTTTTCCGTCACAGGATT
AGTACGAAACCTTGAAGCAGCCAGTGAGATATTCGGCTCCACTGACAACT
TGGTCCAAGGAGACATAACCAAGCCCGAAACATTAGAGAAGCCTTTCACT
GGAAAGGAAGCTCTCATAATCCTTACAAGTGCTGTACCAAGGCTCATTCC
CGCTCCAGAGGGAAGCCCCCCTCAGTTCAAATACGATGAGAATGGTATGC
CAGAGTTTATCGACTGGCTAGGCTCGAAGAATCAGATAGACACTGCCATG
CGTTTGGGCTTGAAACACATCATACTGGTCGGATCAATGGGCAGCACTGA
TGACAACAACCCTCTCAATCGCCTTGGAAACGGAAATATTCTAAGGTTTA
AGAGAAAAGCAGAGCTCTATCTTATCGAATCTGGTATTCCCTACACAATA
ATTAATCCGGCGGGATTGTCAAACGAACCTGAGCAAGAGCGAGAACTTGT
TGTCGGTAGAAATGATGACTTGTTCACTGTCTTCGAAAAAGGCCAATGTT
CAATTCCGCGAGCAGATGTTGCACGAGTCGTAGTCTCGGCTCTCCTTGCT
CCCAATTCAAAGAAGAAGGCCATGGACGTAGCAGCAAGACCAAAAGGTGA
TGGTTCCATAACCGAAAGCCCAGTCCCTCTATTCGACTTGGTCGGCTCAC
AGATCTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:683249..684106-

>Ggra5176.t1 ID=Ggra5176.t1|Name=Ggra5176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000069_pilon:683249..684106- (Gracilaria gracilis GNS1m male)
ATGGCATTCATCACCTCCACACCTCTTATTGGCGCGCCATCAAACTCAAC
TTCCAACTCAAACCGCTGTCGCAGTTTTGGTCGCCCTCATTCCGCCACAA
TGACCCTCGATGTTATTCTCACAGGTGCGGCTGGTCGCACCGGTCGTATT
GTTTTCGAGAAATTGCGATCCGATCCATCTAGCTTTTCCGTCACAGGATT
AGTACGAAACCTTGAAGCAGCCAGTGAGATATTCGGCTCCACTGACAACT
TGGTCCAAGGAGACATAACCAAGCCCGAAACATTAGAGAAGCCTTTCACT
GGAAAGGAAGCTCTCATAATCCTTACAAGTGCTGTACCAAGGCTCATTCC
CGCTCCAGAGGGAAGCCCCCCTCAGTTCAAATACGATGAGAATGGTATGC
CAGAGTTTATCGACTGGCTAGGCTCGAAGAATCAGATAGACACTGCCATG
CGTTTGGGCTTGAAACACATCATACTGGTCGGATCAATGGGCAGCACTGA
TGACAACAACCCTCTCAATCGCCTTGGAAACGGAAATATTCTAAGGTTTA
AGAGAAAAGCAGAGCTCTATCTTATCGAATCTGGTATTCCCTACACAATA
ATTAATCCGGCGGGATTGTCAAACGAACCTGAGCAAGAGCGAGAACTTGT
TGTCGGTAGAAATGATGACTTGTTCACTGTCTTCGAAAAAGGCCAATGTT
CAATTCCGCGAGCAGATGTTGCACGAGTCGTAGTCTCGGCTCTCCTTGCT
CCCAATTCAAAGAAGAAGGCCATGGACGTAGCAGCAAGACCAAAAGGTGA
TGGTTCCATAACCGAAAGCCCAGTCCCTCTATTCGACTTGGTCGGCTCAC
AGATCTAA