Ggra5173.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5173.t1
Unique NameGgra5173.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:672906..674543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706478.1
Preferred nameEIF3L
PFAMsPaf67
Max annot lvl2759|Eukaryota
KEGG koko:K15029
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016032,GO:0019080,GO:0019081,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0051704,GO:0070013,GO:0071704,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue2.03e-206
EggNOG OGsKOG3677@1|root,KOG3677@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5173Ggra5173Gracilaria gracilis GNS1m malegenetig00000069_pilon 672906..674543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5173.t1.stop1Ggra5173.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 672906..672908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5173.t1.CDS1Ggra5173.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 672906..674543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5173.t1.exon1Ggra5173.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 672906..674543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5173.t1.start1Ggra5173.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 674541..674543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5173.t1Ggra5173.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 672906..674543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5173.t1 ID=Ggra5173.t1|Name=Ggra5173.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MDGSWRRGGTPQMTFTDADIDAAEEGAANQSYSEVPEFVGQFLSYVHKTF
LDRNTVELHNLYEQVFSRLTDRYFKSSSWPSADYVTDYVDNDQTFLLLYN
ELYYRHLFSKMSPSLAQRVDSWQNYCNLFELFLKHGMVDHDLPPSWLWDM
IDEFIYQFESWCQYRAKLKSKTPEEIQYLRENDQIWNVQTVLSLLTYLVH
KSNIISWLLRGEPSGSNDPDSSNFDISTLPVYRYIGYFSIIGLLRVNTLL
GDYRLALMVLQPLDFDVSTALFTHVTACHVSIYYYMGFCYIMLRRYEDAV
RVFSSTVIHIGRIKHNHTRSYQYEQINKRNDQMMALLALCLAMQPQQVDE
SMISMVRDKSGDRLSRLRQGEMQAFEDLFNYASPKFVSPAPPDYDAADDT
NMEAPRLQTKLFMKVVKSQLVLPEVRSYLKLYTTIEIGKLAALMDVEPRT
FRSHLHALKHRSWTITGNFTIPPLNGTFSTSSDVGFYIEGEVVHISDTRQ
SSRYGEYFIENIKKLDDLHNQLKRKLVLDSTKHSAKGGRRAVRAS*
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spliced messenger RNA

>Ggra5173.t1 ID=Ggra5173.t1|Name=Ggra5173.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000069_pilon:672906..674543- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGCTCATGGCGTCGAGGAGGCACTCCTCAGATGACCTTTACCGA
TGCGGACATCGATGCTGCTGAGGAAGGGGCTGCCAATCAGTCATACAGCG
AAGTACCGGAGTTTGTCGGTCAGTTCTTGAGCTATGTGCACAAGACTTTC
CTGGATCGAAACACCGTCGAGCTACACAACTTGTACGAACAAGTCTTCTC
GCGACTTACGGATCGCTATTTCAAGTCTTCTAGCTGGCCTTCTGCGGACT
ATGTGACCGACTACGTTGATAACGATCAAACCTTTTTGCTACTCTACAAT
GAGCTTTACTATCGTCACCTCTTTTCAAAGATGAGCCCTAGTCTGGCGCA
ACGCGTAGACTCGTGGCAGAATTATTGTAATCTATTCGAACTGTTTCTGA
AACACGGCATGGTCGATCATGACCTTCCTCCGTCATGGCTGTGGGATATG
ATTGACGAGTTCATATATCAGTTTGAGAGTTGGTGCCAGTATCGAGCAAA
GCTCAAGAGCAAGACACCGGAGGAAATTCAATACCTTCGAGAAAACGATC
AGATCTGGAATGTGCAAACAGTTTTGTCACTACTCACCTACTTGGTTCAC
AAATCGAACATCATCTCTTGGCTCCTTCGGGGTGAACCAAGCGGTTCAAA
TGATCCTGATAGCTCAAACTTCGACATCAGTACTTTGCCGGTTTATCGTT
ACATTGGTTACTTCTCCATTATCGGGCTACTGCGCGTCAATACCTTGCTG
GGTGATTATCGTCTTGCACTTATGGTATTGCAACCATTGGACTTCGACGT
TTCCACAGCATTGTTCACCCATGTTACCGCGTGTCATGTTTCTATTTACT
ATTACATGGGATTCTGCTACATTATGCTTCGAAGATACGAGGATGCTGTC
CGTGTGTTCAGTTCAACTGTCATCCACATAGGTCGCATTAAGCACAATCA
CACGCGCAGTTACCAGTACGAGCAGATCAACAAAAGGAATGACCAGATGA
TGGCACTACTAGCGTTGTGCCTTGCCATGCAGCCGCAACAAGTCGATGAG
AGTATGATTTCTATGGTGAGAGACAAGTCTGGTGATAGACTCTCTCGACT
GCGACAGGGAGAGATGCAAGCGTTTGAAGACTTATTCAATTATGCGAGTC
CGAAGTTCGTTTCGCCGGCCCCTCCAGATTATGACGCAGCAGATGATACG
AACATGGAAGCACCACGATTGCAAACTAAGCTCTTCATGAAGGTTGTGAA
GTCACAGCTTGTGCTACCTGAGGTGCGCTCGTATCTGAAGCTGTACACTA
CTATTGAGATTGGGAAGCTTGCTGCATTAATGGATGTTGAACCGAGAACA
TTCAGAAGTCATCTACATGCGTTGAAACACAGGAGTTGGACCATTACTGG
GAATTTTACAATCCCACCTCTCAATGGAACTTTCTCTACCTCATCAGATG
TTGGATTTTACATTGAAGGAGAGGTTGTGCACATTTCAGATACTAGGCAA
TCTTCCCGGTACGGTGAATACTTCATCGAAAATATCAAGAAACTAGACGA
TTTGCACAATCAACTGAAACGCAAGCTGGTTTTAGATAGCACTAAGCACA
GCGCCAAAGGGGGACGAAGAGCAGTTCGTGCATCCTAG
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protein sequence of Ggra5173.t1

>Ggra5173.t1 ID=Ggra5173.t1|Name=Ggra5173.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MDGSWRRGGTPQMTFTDADIDAAEEGAANQSYSEVPEFVGQFLSYVHKTF
LDRNTVELHNLYEQVFSRLTDRYFKSSSWPSADYVTDYVDNDQTFLLLYN
ELYYRHLFSKMSPSLAQRVDSWQNYCNLFELFLKHGMVDHDLPPSWLWDM
IDEFIYQFESWCQYRAKLKSKTPEEIQYLRENDQIWNVQTVLSLLTYLVH
KSNIISWLLRGEPSGSNDPDSSNFDISTLPVYRYIGYFSIIGLLRVNTLL
GDYRLALMVLQPLDFDVSTALFTHVTACHVSIYYYMGFCYIMLRRYEDAV
RVFSSTVIHIGRIKHNHTRSYQYEQINKRNDQMMALLALCLAMQPQQVDE
SMISMVRDKSGDRLSRLRQGEMQAFEDLFNYASPKFVSPAPPDYDAADDT
NMEAPRLQTKLFMKVVKSQLVLPEVRSYLKLYTTIEIGKLAALMDVEPRT
FRSHLHALKHRSWTITGNFTIPPLNGTFSTSSDVGFYIEGEVVHISDTRQ
SSRYGEYFIENIKKLDDLHNQLKRKLVLDSTKHSAKGGRRAVRAS*
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mRNA from alignment at tig00000069_pilon:672906..674543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5173.t1 ID=Ggra5173.t1|Name=Ggra5173.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000069_pilon:672906..674543- (Gracilaria gracilis GNS1m male)
ATGGATGGCTCATGGCGTCGAGGAGGCACTCCTCAGATGACCTTTACCGA
TGCGGACATCGATGCTGCTGAGGAAGGGGCTGCCAATCAGTCATACAGCG
AAGTACCGGAGTTTGTCGGTCAGTTCTTGAGCTATGTGCACAAGACTTTC
CTGGATCGAAACACCGTCGAGCTACACAACTTGTACGAACAAGTCTTCTC
GCGACTTACGGATCGCTATTTCAAGTCTTCTAGCTGGCCTTCTGCGGACT
ATGTGACCGACTACGTTGATAACGATCAAACCTTTTTGCTACTCTACAAT
GAGCTTTACTATCGTCACCTCTTTTCAAAGATGAGCCCTAGTCTGGCGCA
ACGCGTAGACTCGTGGCAGAATTATTGTAATCTATTCGAACTGTTTCTGA
AACACGGCATGGTCGATCATGACCTTCCTCCGTCATGGCTGTGGGATATG
ATTGACGAGTTCATATATCAGTTTGAGAGTTGGTGCCAGTATCGAGCAAA
GCTCAAGAGCAAGACACCGGAGGAAATTCAATACCTTCGAGAAAACGATC
AGATCTGGAATGTGCAAACAGTTTTGTCACTACTCACCTACTTGGTTCAC
AAATCGAACATCATCTCTTGGCTCCTTCGGGGTGAACCAAGCGGTTCAAA
TGATCCTGATAGCTCAAACTTCGACATCAGTACTTTGCCGGTTTATCGTT
ACATTGGTTACTTCTCCATTATCGGGCTACTGCGCGTCAATACCTTGCTG
GGTGATTATCGTCTTGCACTTATGGTATTGCAACCATTGGACTTCGACGT
TTCCACAGCATTGTTCACCCATGTTACCGCGTGTCATGTTTCTATTTACT
ATTACATGGGATTCTGCTACATTATGCTTCGAAGATACGAGGATGCTGTC
CGTGTGTTCAGTTCAACTGTCATCCACATAGGTCGCATTAAGCACAATCA
CACGCGCAGTTACCAGTACGAGCAGATCAACAAAAGGAATGACCAGATGA
TGGCACTACTAGCGTTGTGCCTTGCCATGCAGCCGCAACAAGTCGATGAG
AGTATGATTTCTATGGTGAGAGACAAGTCTGGTGATAGACTCTCTCGACT
GCGACAGGGAGAGATGCAAGCGTTTGAAGACTTATTCAATTATGCGAGTC
CGAAGTTCGTTTCGCCGGCCCCTCCAGATTATGACGCAGCAGATGATACG
AACATGGAAGCACCACGATTGCAAACTAAGCTCTTCATGAAGGTTGTGAA
GTCACAGCTTGTGCTACCTGAGGTGCGCTCGTATCTGAAGCTGTACACTA
CTATTGAGATTGGGAAGCTTGCTGCATTAATGGATGTTGAACCGAGAACA
TTCAGAAGTCATCTACATGCGTTGAAACACAGGAGTTGGACCATTACTGG
GAATTTTACAATCCCACCTCTCAATGGAACTTTCTCTACCTCATCAGATG
TTGGATTTTACATTGAAGGAGAGGTTGTGCACATTTCAGATACTAGGCAA
TCTTCCCGGTACGGTGAATACTTCATCGAAAATATCAAGAAACTAGACGA
TTTGCACAATCAACTGAAACGCAAGCTGGTTTTAGATAGCACTAAGCACA
GCGCCAAAGGGGGACGAAGAGCAGTTCGTGCATCCTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:672906..674543-

>Ggra5173.t1 ID=Ggra5173.t1|Name=Ggra5173.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000069_pilon:672906..674543- (Gracilaria gracilis GNS1m male)
ATGGATGGCTCATGGCGTCGAGGAGGCACTCCTCAGATGACCTTTACCGA
TGCGGACATCGATGCTGCTGAGGAAGGGGCTGCCAATCAGTCATACAGCG
AAGTACCGGAGTTTGTCGGTCAGTTCTTGAGCTATGTGCACAAGACTTTC
CTGGATCGAAACACCGTCGAGCTACACAACTTGTACGAACAAGTCTTCTC
GCGACTTACGGATCGCTATTTCAAGTCTTCTAGCTGGCCTTCTGCGGACT
ATGTGACCGACTACGTTGATAACGATCAAACCTTTTTGCTACTCTACAAT
GAGCTTTACTATCGTCACCTCTTTTCAAAGATGAGCCCTAGTCTGGCGCA
ACGCGTAGACTCGTGGCAGAATTATTGTAATCTATTCGAACTGTTTCTGA
AACACGGCATGGTCGATCATGACCTTCCTCCGTCATGGCTGTGGGATATG
ATTGACGAGTTCATATATCAGTTTGAGAGTTGGTGCCAGTATCGAGCAAA
GCTCAAGAGCAAGACACCGGAGGAAATTCAATACCTTCGAGAAAACGATC
AGATCTGGAATGTGCAAACAGTTTTGTCACTACTCACCTACTTGGTTCAC
AAATCGAACATCATCTCTTGGCTCCTTCGGGGTGAACCAAGCGGTTCAAA
TGATCCTGATAGCTCAAACTTCGACATCAGTACTTTGCCGGTTTATCGTT
ACATTGGTTACTTCTCCATTATCGGGCTACTGCGCGTCAATACCTTGCTG
GGTGATTATCGTCTTGCACTTATGGTATTGCAACCATTGGACTTCGACGT
TTCCACAGCATTGTTCACCCATGTTACCGCGTGTCATGTTTCTATTTACT
ATTACATGGGATTCTGCTACATTATGCTTCGAAGATACGAGGATGCTGTC
CGTGTGTTCAGTTCAACTGTCATCCACATAGGTCGCATTAAGCACAATCA
CACGCGCAGTTACCAGTACGAGCAGATCAACAAAAGGAATGACCAGATGA
TGGCACTACTAGCGTTGTGCCTTGCCATGCAGCCGCAACAAGTCGATGAG
AGTATGATTTCTATGGTGAGAGACAAGTCTGGTGATAGACTCTCTCGACT
GCGACAGGGAGAGATGCAAGCGTTTGAAGACTTATTCAATTATGCGAGTC
CGAAGTTCGTTTCGCCGGCCCCTCCAGATTATGACGCAGCAGATGATACG
AACATGGAAGCACCACGATTGCAAACTAAGCTCTTCATGAAGGTTGTGAA
GTCACAGCTTGTGCTACCTGAGGTGCGCTCGTATCTGAAGCTGTACACTA
CTATTGAGATTGGGAAGCTTGCTGCATTAATGGATGTTGAACCGAGAACA
TTCAGAAGTCATCTACATGCGTTGAAACACAGGAGTTGGACCATTACTGG
GAATTTTACAATCCCACCTCTCAATGGAACTTTCTCTACCTCATCAGATG
TTGGATTTTACATTGAAGGAGAGGTTGTGCACATTTCAGATACTAGGCAA
TCTTCCCGGTACGGTGAATACTTCATCGAAAATATCAAGAAACTAGACGA
TTTGCACAATCAACTGAAACGCAAGCTGGTTTTAGATAGCACTAAGCACA
GCGCCAAAGGGGGACGAAGAGCAGTTCGTGCATCCTAG
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