Ggra5172.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5172.t1
Unique Name	Ggra5172.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	663

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:670883..672871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5172	Ggra5172	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 670883..672871 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5172.t1.start1	Ggra5172.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 670883..670885 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5172.t1.CDS1	Ggra5172.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 670883..672871 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5172.t1.exon1	Ggra5172.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 670883..672871 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5172.t1.stop1	Ggra5172.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 672869..672871 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5172.t1	Ggra5172.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 670883..672871 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:670883..672871+
coding sequence from alignment at tig00000069_pilon:670883..672871+

mRNA sequence

>Ggra5172.t1 ID=Ggra5172.t1|Name=Ggra5172.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp
MTGTLLRLFITFVVLTALWSSIESAQTDSCFPTKEQVNVPLQVSVTFAGT
LPLFMREANWTPEAKKQFSSQLAAKLRHVALPSTEEDDVLVSLVGKLHPN
TCSVVEFSYEYEVTVADEKTASALDAALESSRKESTSIYVNGAGVADKFW
GILQSDKNFRPTENPNVYNVLVYDAISVAPQYGYRAEEGGTIGTLAMASE
KRFAVIDVGAKPFFLAAESLTVGDLLTSNSKSALEYAVELHGIISKLLTP
RPSTKMRRFPPETRLAFKLSMVDVSAVIGRMPGVAGDSEGNKPLGTSFSA
EQFMQVLNTVFHNRVVPEDKEVSISTENVDMIQNSRMAMAVSRSFSVKGL
EMVLDSEQLISSLLWNSTERYGYFVDSSFVAHIPMYLFSFADDSRITHFD
TGEQTRARVVGKEAVVMTENRLRDGLDEHVSTTSEATKEVLELLCGLGEE
SLSMMTSRTGMVPLILRDIAKRNVLIQELDWSQAMASWKAKELLDFEGLD
SRLIPHQEGSRIEMARDKVREGLQNLTMQWSRTSVSSSLADVESATVYLM
ELSTKLADLLHEEVCNQALPEEILLKAEAEVGGKGISEKQRKRSRFPMFV
TLSGIAGIGFGLYLHRQAMKQSSFRGAYLDDLSIAPTMRNLDVSATTQWF
STLTSSYKSKTH*

spliced messenger RNA

>Ggra5172.t1 ID=Ggra5172.t1|Name=Ggra5172.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1989bp|location=Sequence derived from alignment at tig00000069_pilon:670883..672871+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGAACTTTGCTCCGTTTGTTCATCACCTTTGTGGTGCTTACCGC
CCTATGGTCTTCGATAGAATCTGCGCAAACCGACTCCTGTTTTCCCACAA
AGGAACAAGTAAATGTTCCTCTTCAGGTTAGTGTAACCTTCGCGGGCACT
CTTCCACTTTTTATGCGTGAAGCCAATTGGACCCCCGAAGCGAAGAAACA
GTTTTCAAGCCAGCTGGCTGCTAAGCTTCGCCACGTCGCATTACCGAGTA
CGGAGGAAGACGATGTCTTAGTTTCTCTAGTGGGAAAGCTGCACCCGAAC
ACATGTTCAGTAGTTGAATTCTCTTATGAATACGAAGTGACTGTTGCGGA
TGAGAAAACTGCTTCGGCCTTGGATGCTGCCCTAGAATCTAGTCGGAAAG
AATCTACATCAATATATGTGAATGGCGCTGGAGTTGCCGACAAGTTTTGG
GGTATACTTCAATCTGACAAAAACTTTAGACCCACCGAGAACCCAAATGT
GTACAATGTGTTGGTTTATGATGCCATATCTGTAGCACCACAGTATGGCT
ATCGAGCTGAAGAAGGAGGGACTATTGGGACGCTGGCAATGGCGAGCGAA
AAGCGTTTCGCTGTTATTGATGTTGGTGCAAAACCTTTCTTTCTCGCTGC
AGAGTCTTTGACTGTTGGAGACCTGCTCACTTCAAATTCGAAATCGGCAC
TCGAGTACGCTGTGGAGCTACATGGAATCATATCCAAGCTTCTCACCCCG
CGCCCGTCGACAAAAATGCGCCGATTCCCGCCTGAAACAAGACTTGCCTT
TAAGCTTAGTATGGTGGATGTCAGTGCTGTGATAGGAAGGATGCCCGGTG
TAGCGGGAGACAGTGAAGGGAACAAACCTCTAGGCACTAGCTTTAGTGCG
GAACAGTTCATGCAAGTTCTGAATACAGTCTTCCACAATCGTGTCGTTCC
AGAAGATAAAGAAGTGTCAATCTCGACGGAGAATGTGGATATGATACAGA
ACTCTAGGATGGCTATGGCCGTGTCGCGATCATTTTCAGTGAAGGGTTTA
GAAATGGTCTTGGACAGTGAGCAACTAATCAGCAGCCTATTGTGGAACTC
TACAGAACGTTATGGCTACTTTGTGGACTCCTCCTTTGTTGCACATATAC
CTATGTACTTGTTTTCGTTTGCCGATGACTCCAGGATAACACACTTCGAT
ACAGGGGAACAGACGCGAGCACGAGTAGTGGGAAAAGAAGCTGTTGTTAT
GACGGAAAACAGACTTCGGGATGGATTAGATGAGCACGTCAGTACAACAT
CGGAAGCAACGAAAGAAGTGCTGGAACTTCTATGTGGTTTGGGCGAAGAG
AGCTTATCGATGATGACGTCGCGAACTGGTATGGTACCTCTAATCCTTAG
AGACATTGCAAAACGAAACGTTTTAATTCAAGAACTTGATTGGTCTCAAG
CAATGGCATCATGGAAAGCTAAGGAGTTGCTGGACTTCGAAGGATTAGAT
AGCCGTTTAATTCCACATCAGGAGGGAAGTCGGATTGAAATGGCCAGGGA
TAAGGTTCGTGAAGGCCTTCAAAACCTCACAATGCAATGGAGTCGCACAT
CTGTGTCCTCGTCGCTCGCAGACGTCGAGTCTGCTACAGTGTATCTCATG
GAATTGTCCACTAAACTAGCTGATTTGCTTCACGAAGAAGTTTGTAACCA
GGCGTTGCCGGAGGAAATACTCCTCAAGGCTGAGGCTGAAGTGGGTGGCA
AAGGTATTTCTGAAAAGCAAAGAAAACGTTCACGTTTTCCAATGTTTGTT
ACGTTATCAGGAATTGCCGGGATTGGATTCGGATTGTACTTGCACCGCCA
AGCTATGAAACAATCGAGCTTCCGCGGAGCATATCTCGATGATCTGTCGA
TCGCACCGACAATGCGAAACCTGGACGTTTCAGCAACAACCCAATGGTTC
AGCACTTTAACCTCTTCGTATAAATCCAAGACTCATTAA

protein sequence of Ggra5172.t1

>Ggra5172.t1 ID=Ggra5172.t1|Name=Ggra5172.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=663bp
MTGTLLRLFITFVVLTALWSSIESAQTDSCFPTKEQVNVPLQVSVTFAGT
LPLFMREANWTPEAKKQFSSQLAAKLRHVALPSTEEDDVLVSLVGKLHPN
TCSVVEFSYEYEVTVADEKTASALDAALESSRKESTSIYVNGAGVADKFW
GILQSDKNFRPTENPNVYNVLVYDAISVAPQYGYRAEEGGTIGTLAMASE
KRFAVIDVGAKPFFLAAESLTVGDLLTSNSKSALEYAVELHGIISKLLTP
RPSTKMRRFPPETRLAFKLSMVDVSAVIGRMPGVAGDSEGNKPLGTSFSA
EQFMQVLNTVFHNRVVPEDKEVSISTENVDMIQNSRMAMAVSRSFSVKGL
EMVLDSEQLISSLLWNSTERYGYFVDSSFVAHIPMYLFSFADDSRITHFD
TGEQTRARVVGKEAVVMTENRLRDGLDEHVSTTSEATKEVLELLCGLGEE
SLSMMTSRTGMVPLILRDIAKRNVLIQELDWSQAMASWKAKELLDFEGLD
SRLIPHQEGSRIEMARDKVREGLQNLTMQWSRTSVSSSLADVESATVYLM
ELSTKLADLLHEEVCNQALPEEILLKAEAEVGGKGISEKQRKRSRFPMFV
TLSGIAGIGFGLYLHRQAMKQSSFRGAYLDDLSIAPTMRNLDVSATTQWF
STLTSSYKSKTH*

mRNA from alignment at tig00000069_pilon:670883..672871+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5172.t1 ID=Ggra5172.t1|Name=Ggra5172.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1989bp|location=Sequence derived from alignment at tig00000069_pilon:670883..672871+ (Gracilaria gracilis GNS1m male)
ATGACTGGAACTTTGCTCCGTTTGTTCATCACCTTTGTGGTGCTTACCGC
CCTATGGTCTTCGATAGAATCTGCGCAAACCGACTCCTGTTTTCCCACAA
AGGAACAAGTAAATGTTCCTCTTCAGGTTAGTGTAACCTTCGCGGGCACT
CTTCCACTTTTTATGCGTGAAGCCAATTGGACCCCCGAAGCGAAGAAACA
GTTTTCAAGCCAGCTGGCTGCTAAGCTTCGCCACGTCGCATTACCGAGTA
CGGAGGAAGACGATGTCTTAGTTTCTCTAGTGGGAAAGCTGCACCCGAAC
ACATGTTCAGTAGTTGAATTCTCTTATGAATACGAAGTGACTGTTGCGGA
TGAGAAAACTGCTTCGGCCTTGGATGCTGCCCTAGAATCTAGTCGGAAAG
AATCTACATCAATATATGTGAATGGCGCTGGAGTTGCCGACAAGTTTTGG
GGTATACTTCAATCTGACAAAAACTTTAGACCCACCGAGAACCCAAATGT
GTACAATGTGTTGGTTTATGATGCCATATCTGTAGCACCACAGTATGGCT
ATCGAGCTGAAGAAGGAGGGACTATTGGGACGCTGGCAATGGCGAGCGAA
AAGCGTTTCGCTGTTATTGATGTTGGTGCAAAACCTTTCTTTCTCGCTGC
AGAGTCTTTGACTGTTGGAGACCTGCTCACTTCAAATTCGAAATCGGCAC
TCGAGTACGCTGTGGAGCTACATGGAATCATATCCAAGCTTCTCACCCCG
CGCCCGTCGACAAAAATGCGCCGATTCCCGCCTGAAACAAGACTTGCCTT
TAAGCTTAGTATGGTGGATGTCAGTGCTGTGATAGGAAGGATGCCCGGTG
TAGCGGGAGACAGTGAAGGGAACAAACCTCTAGGCACTAGCTTTAGTGCG
GAACAGTTCATGCAAGTTCTGAATACAGTCTTCCACAATCGTGTCGTTCC
AGAAGATAAAGAAGTGTCAATCTCGACGGAGAATGTGGATATGATACAGA
ACTCTAGGATGGCTATGGCCGTGTCGCGATCATTTTCAGTGAAGGGTTTA
GAAATGGTCTTGGACAGTGAGCAACTAATCAGCAGCCTATTGTGGAACTC
TACAGAACGTTATGGCTACTTTGTGGACTCCTCCTTTGTTGCACATATAC
CTATGTACTTGTTTTCGTTTGCCGATGACTCCAGGATAACACACTTCGAT
ACAGGGGAACAGACGCGAGCACGAGTAGTGGGAAAAGAAGCTGTTGTTAT
GACGGAAAACAGACTTCGGGATGGATTAGATGAGCACGTCAGTACAACAT
CGGAAGCAACGAAAGAAGTGCTGGAACTTCTATGTGGTTTGGGCGAAGAG
AGCTTATCGATGATGACGTCGCGAACTGGTATGGTACCTCTAATCCTTAG
AGACATTGCAAAACGAAACGTTTTAATTCAAGAACTTGATTGGTCTCAAG
CAATGGCATCATGGAAAGCTAAGGAGTTGCTGGACTTCGAAGGATTAGAT
AGCCGTTTAATTCCACATCAGGAGGGAAGTCGGATTGAAATGGCCAGGGA
TAAGGTTCGTGAAGGCCTTCAAAACCTCACAATGCAATGGAGTCGCACAT
CTGTGTCCTCGTCGCTCGCAGACGTCGAGTCTGCTACAGTGTATCTCATG
GAATTGTCCACTAAACTAGCTGATTTGCTTCACGAAGAAGTTTGTAACCA
GGCGTTGCCGGAGGAAATACTCCTCAAGGCTGAGGCTGAAGTGGGTGGCA
AAGGTATTTCTGAAAAGCAAAGAAAACGTTCACGTTTTCCAATGTTTGTT
ACGTTATCAGGAATTGCCGGGATTGGATTCGGATTGTACTTGCACCGCCA
AGCTATGAAACAATCGAGCTTCCGCGGAGCATATCTCGATGATCTGTCGA
TCGCACCGACAATGCGAAACCTGGACGTTTCAGCAACAACCCAATGGTTC
AGCACTTTAACCTCTTCGTATAAATCCAAGACTCATTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:670883..672871+

>Ggra5172.t1 ID=Ggra5172.t1|Name=Ggra5172.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1989bp|location=Sequence derived from alignment at tig00000069_pilon:670883..672871+ (Gracilaria gracilis GNS1m male)
ATGACTGGAACTTTGCTCCGTTTGTTCATCACCTTTGTGGTGCTTACCGC
CCTATGGTCTTCGATAGAATCTGCGCAAACCGACTCCTGTTTTCCCACAA
AGGAACAAGTAAATGTTCCTCTTCAGGTTAGTGTAACCTTCGCGGGCACT
CTTCCACTTTTTATGCGTGAAGCCAATTGGACCCCCGAAGCGAAGAAACA
GTTTTCAAGCCAGCTGGCTGCTAAGCTTCGCCACGTCGCATTACCGAGTA
CGGAGGAAGACGATGTCTTAGTTTCTCTAGTGGGAAAGCTGCACCCGAAC
ACATGTTCAGTAGTTGAATTCTCTTATGAATACGAAGTGACTGTTGCGGA
TGAGAAAACTGCTTCGGCCTTGGATGCTGCCCTAGAATCTAGTCGGAAAG
AATCTACATCAATATATGTGAATGGCGCTGGAGTTGCCGACAAGTTTTGG
GGTATACTTCAATCTGACAAAAACTTTAGACCCACCGAGAACCCAAATGT
GTACAATGTGTTGGTTTATGATGCCATATCTGTAGCACCACAGTATGGCT
ATCGAGCTGAAGAAGGAGGGACTATTGGGACGCTGGCAATGGCGAGCGAA
AAGCGTTTCGCTGTTATTGATGTTGGTGCAAAACCTTTCTTTCTCGCTGC
AGAGTCTTTGACTGTTGGAGACCTGCTCACTTCAAATTCGAAATCGGCAC
TCGAGTACGCTGTGGAGCTACATGGAATCATATCCAAGCTTCTCACCCCG
CGCCCGTCGACAAAAATGCGCCGATTCCCGCCTGAAACAAGACTTGCCTT
TAAGCTTAGTATGGTGGATGTCAGTGCTGTGATAGGAAGGATGCCCGGTG
TAGCGGGAGACAGTGAAGGGAACAAACCTCTAGGCACTAGCTTTAGTGCG
GAACAGTTCATGCAAGTTCTGAATACAGTCTTCCACAATCGTGTCGTTCC
AGAAGATAAAGAAGTGTCAATCTCGACGGAGAATGTGGATATGATACAGA
ACTCTAGGATGGCTATGGCCGTGTCGCGATCATTTTCAGTGAAGGGTTTA
GAAATGGTCTTGGACAGTGAGCAACTAATCAGCAGCCTATTGTGGAACTC
TACAGAACGTTATGGCTACTTTGTGGACTCCTCCTTTGTTGCACATATAC
CTATGTACTTGTTTTCGTTTGCCGATGACTCCAGGATAACACACTTCGAT
ACAGGGGAACAGACGCGAGCACGAGTAGTGGGAAAAGAAGCTGTTGTTAT
GACGGAAAACAGACTTCGGGATGGATTAGATGAGCACGTCAGTACAACAT
CGGAAGCAACGAAAGAAGTGCTGGAACTTCTATGTGGTTTGGGCGAAGAG
AGCTTATCGATGATGACGTCGCGAACTGGTATGGTACCTCTAATCCTTAG
AGACATTGCAAAACGAAACGTTTTAATTCAAGAACTTGATTGGTCTCAAG
CAATGGCATCATGGAAAGCTAAGGAGTTGCTGGACTTCGAAGGATTAGAT
AGCCGTTTAATTCCACATCAGGAGGGAAGTCGGATTGAAATGGCCAGGGA
TAAGGTTCGTGAAGGCCTTCAAAACCTCACAATGCAATGGAGTCGCACAT
CTGTGTCCTCGTCGCTCGCAGACGTCGAGTCTGCTACAGTGTATCTCATG
GAATTGTCCACTAAACTAGCTGATTTGCTTCACGAAGAAGTTTGTAACCA
GGCGTTGCCGGAGGAAATACTCCTCAAGGCTGAGGCTGAAGTGGGTGGCA
AAGGTATTTCTGAAAAGCAAAGAAAACGTTCACGTTTTCCAATGTTTGTT
ACGTTATCAGGAATTGCCGGGATTGGATTCGGATTGTACTTGCACCGCCA
AGCTATGAAACAATCGAGCTTCCGCGGAGCATATCTCGATGATCTGTCGA
TCGCACCGACAATGCGAAACCTGGACGTTTCAGCAACAACCCAATGGTTC
AGCACTTTAACCTCTTCGTATAAATCCAAGACTCATTAA