Ggra5156.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5156.t1
Unique NameGgra5156.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:629220..630371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705874.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K11111
KEGG ModuleM00424
Evalue2.09e-09
EggNOG OGs2E4ZS@1|root,2SBUF@2759|Eukaryota
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryB
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5156Ggra5156Gracilaria gracilis GNS1m malegenetig00000069_pilon 629220..630371 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5156.t1.start1Ggra5156.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 629220..629222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5156.t1.CDS1Ggra5156.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 629220..630371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5156.t1.exon1Ggra5156.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 629220..630371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5156.t1.stop1Ggra5156.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 630369..630371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5156.t1Ggra5156.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 629220..630371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5156.t1 ID=Ggra5156.t1|Name=Ggra5156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp
MSSSSPSTPLDILCNVAAAERRAAHHPPLVPPPPPPPPPRPPPPPPPRPS
LPLPPMRAPPLPRLSSSAPPLPLPAALRYARAHAPLPPPSCSALPLPAPP
PFARSFPASLPSRALFTQHVQHAAQLPPLSPLSSSLPSPPSPLACLPRNF
SAPSLRAPPVAAPPPPLRAGTHAVAHPSSYPTSSLSALPRAPCVPAQLMC
VRGGAMGGGGGGGGGGGGATRMAAPSYGSPPAAGLGRPRAALGSPGAMKG
VSGRATKSSGRRDSYTRFTAEEEAMLLDGVRVFGVGNWKKILNSYRFHWK
RTAVDLKDKYRNMTRAKMRRINAAAAAGATQQSRERQCVSYARLHAALVP
KRAPPDAVRMQMGAVAARTSTARSGVDEKRVGA*
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spliced messenger RNA

>Ggra5156.t1 ID=Ggra5156.t1|Name=Ggra5156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000069_pilon:629220..630371+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGTCGTCGCCGTCCACCCCGCTGGACATTCTGTGCAACGTCGC
GGCCGCCGAGCGCCGCGCCGCCCATCACCCGCCTTTAGTGCCGCCACCAC
CGCCGCCGCCGCCTCCTCGGCCGCCGCCACCGCCGCCGCCGCGCCCGTCG
CTGCCGCTACCGCCCATGCGCGCGCCGCCGCTGCCGCGCCTGTCGTCGTC
CGCGCCGCCGCTGCCGCTGCCGGCCGCGCTGCGCTACGCGCGCGCGCACG
CGCCGCTGCCGCCGCCGTCGTGCTCGGCGCTGCCGCTTCCGGCGCCGCCG
CCGTTTGCGCGCTCGTTCCCGGCCAGTCTGCCGTCGCGCGCGCTGTTCAC
GCAGCACGTGCAGCAcgccgcgcagctaccgccgctgtcgccgctgtcgt
cgtcgctgccgtcgccgccgtcgccgcTGGCGTGCCTGCCGCGCAACTTC
Tcggcgccgtcgctgcgcgcgccgcccgtggccgcgccgccgccgccgct
gcgcgccggcacgcacgccgTTGCGCACCCTTCCTCGTACCCGACTTCGT
CGCTTTCCGCGCTGCCGCGCGCGCCGTGCGTGCCGGCGCAGCTCATGTGC
GTGCGCGGCGGCGCAATGggcggtggtggtggtggtggcggcggcggcgg
tggCGCGACGCGCATGGCGGCGCCCTCGTATGGGTCGCCGCCTGCGGCGG
GCTTGGGGCGGCCGCGCGCGGCGCTTGGGTCGCCCGGCGCGATGAAGGGC
GTGAGCGGACGTGCTACAAAGTCGAGCGGGCGGCGTGACTCGTACACGCG
CTTCACGGCGGAGGAGGAGGCCATGCTGCTGGACGGCGTGCGCGTATTTG
GTGTGGGTAACTGGAAGAAGATTTTGAACAGCTACCGCTTCCATTGGAAG
CGCACGGCGGTGGATTTGAAGGACAAGTACCGCAACATGACGCGCGCAAA
GATGAGACGCATCAAcgccgccgccgccgccggcgcTACGCAGCAGTCGC
GCGAGCGGCAGTGCGTGTCGTATGCGCGCCTGCATGCGGCGCTTGTGCCC
AAGCGCGCGCCGCCTGACGCCGTGCGCATGCAGATGGGCGCGGTGGCGGC
GCGCACCTCAACGGCGCGTTCCGGCGTGGACGAGAAGCGCGTGGGTGCGT
GA
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protein sequence of Ggra5156.t1

>Ggra5156.t1 ID=Ggra5156.t1|Name=Ggra5156.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=384bp
MSSSSPSTPLDILCNVAAAERRAAHHPPLVPPPPPPPPPRPPPPPPPRPS
LPLPPMRAPPLPRLSSSAPPLPLPAALRYARAHAPLPPPSCSALPLPAPP
PFARSFPASLPSRALFTQHVQHAAQLPPLSPLSSSLPSPPSPLACLPRNF
SAPSLRAPPVAAPPPPLRAGTHAVAHPSSYPTSSLSALPRAPCVPAQLMC
VRGGAMGGGGGGGGGGGGATRMAAPSYGSPPAAGLGRPRAALGSPGAMKG
VSGRATKSSGRRDSYTRFTAEEEAMLLDGVRVFGVGNWKKILNSYRFHWK
RTAVDLKDKYRNMTRAKMRRINAAAAAGATQQSRERQCVSYARLHAALVP
KRAPPDAVRMQMGAVAARTSTARSGVDEKRVGA*
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mRNA from alignment at tig00000069_pilon:629220..630371+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5156.t1 ID=Ggra5156.t1|Name=Ggra5156.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000069_pilon:629220..630371+ (Gracilaria gracilis GNS1m male)
ATGTCGTCGTCGTCGCCGTCCACCCCGCTGGACATTCTGTGCAACGTCGC
GGCCGCCGAGCGCCGCGCCGCCCATCACCCGCCTTTAGTGCCGCCACCAC
CGCCGCCGCCGCCTCCTCGGCCGCCGCCACCGCCGCCGCCGCGCCCGTCG
CTGCCGCTACCGCCCATGCGCGCGCCGCCGCTGCCGCGCCTGTCGTCGTC
CGCGCCGCCGCTGCCGCTGCCGGCCGCGCTGCGCTACGCGCGCGCGCACG
CGCCGCTGCCGCCGCCGTCGTGCTCGGCGCTGCCGCTTCCGGCGCCGCCG
CCGTTTGCGCGCTCGTTCCCGGCCAGTCTGCCGTCGCGCGCGCTGTTCAC
GCAGCACGTGCAGCAcgccgcgcagctaccgccgctgtcgccgctgtcgt
cgtcgctgccgtcgccgccgtcgccgcTGGCGTGCCTGCCGCGCAACTTC
Tcggcgccgtcgctgcgcgcgccgcccgtggccgcgccgccgccgccgct
gcgcgccggcacgcacgccgTTGCGCACCCTTCCTCGTACCCGACTTCGT
CGCTTTCCGCGCTGCCGCGCGCGCCGTGCGTGCCGGCGCAGCTCATGTGC
GTGCGCGGCGGCGCAATGggcggtggtggtggtggtggcggcggcggcgg
tggCGCGACGCGCATGGCGGCGCCCTCGTATGGGTCGCCGCCTGCGGCGG
GCTTGGGGCGGCCGCGCGCGGCGCTTGGGTCGCCCGGCGCGATGAAGGGC
GTGAGCGGACGTGCTACAAAGTCGAGCGGGCGGCGTGACTCGTACACGCG
CTTCACGGCGGAGGAGGAGGCCATGCTGCTGGACGGCGTGCGCGTATTTG
GTGTGGGTAACTGGAAGAAGATTTTGAACAGCTACCGCTTCCATTGGAAG
CGCACGGCGGTGGATTTGAAGGACAAGTACCGCAACATGACGCGCGCAAA
GATGAGACGCATCAAcgccgccgccgccgccggcgcTACGCAGCAGTCGC
GCGAGCGGCAGTGCGTGTCGTATGCGCGCCTGCATGCGGCGCTTGTGCCC
AAGCGCGCGCCGCCTGACGCCGTGCGCATGCAGATGGGCGCGGTGGCGGC
GCGCACCTCAACGGCGCGTTCCGGCGTGGACGAGAAGCGCGTGGGTGCGT
GA
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Coding sequence (CDS) from alignment at tig00000069_pilon:629220..630371+

>Ggra5156.t1 ID=Ggra5156.t1|Name=Ggra5156.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00000069_pilon:629220..630371+ (Gracilaria gracilis GNS1m male)
ATGTCGTCGTCGTCGCCGTCCACCCCGCTGGACATTCTGTGCAACGTCGC
GGCCGCCGAGCGCCGCGCCGCCCATCACCCGCCTTTAGTGCCGCCACCAC
CGCCGCCGCCGCCTCCTCGGCCGCCGCCACCGCCGCCGCCGCGCCCGTCG
CTGCCGCTACCGCCCATGCGCGCGCCGCCGCTGCCGCGCCTGTCGTCGTC
CGCGCCGCCGCTGCCGCTGCCGGCCGCGCTGCGCTACGCGCGCGCGCACG
CGCCGCTGCCGCCGCCGTCGTGCTCGGCGCTGCCGCTTCCGGCGCCGCCG
CCGTTTGCGCGCTCGTTCCCGGCCAGTCTGCCGTCGCGCGCGCTGTTCAC
GCAGCACGTGCAGCAcgccgcgcagctaccgccgctgtcgccgctgtcgt
cgtcgctgccgtcgccgccgtcgccgcTGGCGTGCCTGCCGCGCAACTTC
Tcggcgccgtcgctgcgcgcgccgcccgtggccgcgccgccgccgccgct
gcgcgccggcacgcacgccgTTGCGCACCCTTCCTCGTACCCGACTTCGT
CGCTTTCCGCGCTGCCGCGCGCGCCGTGCGTGCCGGCGCAGCTCATGTGC
GTGCGCGGCGGCGCAATGggcggtggtggtggtggtggcggcggcggcgg
tggCGCGACGCGCATGGCGGCGCCCTCGTATGGGTCGCCGCCTGCGGCGG
GCTTGGGGCGGCCGCGCGCGGCGCTTGGGTCGCCCGGCGCGATGAAGGGC
GTGAGCGGACGTGCTACAAAGTCGAGCGGGCGGCGTGACTCGTACACGCG
CTTCACGGCGGAGGAGGAGGCCATGCTGCTGGACGGCGTGCGCGTATTTG
GTGTGGGTAACTGGAAGAAGATTTTGAACAGCTACCGCTTCCATTGGAAG
CGCACGGCGGTGGATTTGAAGGACAAGTACCGCAACATGACGCGCGCAAA
GATGAGACGCATCAAcgccgccgccgccgccggcgcTACGCAGCAGTCGC
GCGAGCGGCAGTGCGTGTCGTATGCGCGCCTGCATGCGGCGCTTGTGCCC
AAGCGCGCGCCGCCTGACGCCGTGCGCATGCAGATGGGCGCGGTGGCGGC
GCGCACCTCAACGGCGCGTTCCGGCGTGGACGAGAAGCGCGTGGGTGCGT
GA
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