Ggra5153.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5153.t1
Unique NameGgra5153.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:617507..618685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ05155
Preferred nameE2F3
PFAMsE2F_CC-MB,E2F_TDP
Max annot lvl35493|Streptophyta
KEGG koko:K06620,ko:K12590
KEGG Pathwayko01522,ko03018,ko04110,ko04218,ko04934,ko05161,ko05166,ko05167,ko05200,ko05206,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map03018,map04110,map04218,map04934,map05161,map05166,map05167,map05200,map05206,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG ModuleM00391,M00692
GOsGO:0000902,GO:0000904,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0008150,GO:0008284,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010026,GO:0010033,GO:0010090,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032502,GO:0032989,GO:0042127,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045787,GO:0045893,GO:0045935,GO:0048468,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051302,GO:0051445,GO:0051446,GO:0051726,GO:0060255,GO:0065007,GO:0071840,GO:0080090,GO:0090558,GO:0090626,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000241,GO:2000243,GO:2001141
Evalue1.68e-62
EggNOG OGsKOG2577@1|root,KOG2577@2759|Eukaryota,37JWT@33090|Viridiplantae,3GAZ5@35493|Streptophyta
Descriptiontranscription factor
COG categoryK
BRITEko00000,ko00001,ko00002,ko03000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5153Ggra5153Gracilaria gracilis GNS1m malegenetig00000069_pilon 617507..618685 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5153.t1.start1Ggra5153.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 617507..617509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5153.t1.CDS1Ggra5153.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 617507..618685 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5153.t1.exon1Ggra5153.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 617507..618685 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5153.t1.stop1Ggra5153.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 618683..618685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5153.t1Ggra5153.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 617507..618685 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5153.t1 ID=Ggra5153.t1|Name=Ggra5153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MASAAAPSSPGPPPPLPPAIASKSVPSPSATPIRAPSVHQSVAASTLTAL
DQSPSAAAAAAAAADQRSLKRPRNNAARPAETVDRKPKKKTSMLVEDKTC
RYDSSLGLLTTKFVNLLKDSKDGVLDLNMAAECLHVQKRRIYDITNVLEG
IGIIEKKSKNNIKWRHQLSTTPSSQQELAALRKEFDILSAEERDLDQQID
SMQAALKELASGEQCAAYAYVTHHDIKAIPELRGDTLIAIKAPPGTELEV
PDPDDGMPYGERRYQVFVKSNSGPIDCLLVSQGGEDPPVKSEPSTSRQNG
TPHFTPELSIANPPVPNVLEDEDQDVMGILRLSPAHTEQEFFYSFDDTGL
EDHHGLADLYDTVMTNSEKGLPDVGDISAPPLSANEQLPDVP*
back to top

spliced messenger RNA

>Ggra5153.t1 ID=Ggra5153.t1|Name=Ggra5153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000069_pilon:617507..618685+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGCTGCCGCTccgtcctcgcccgggccaccgcccccgctccc
ccccgccatcgcgtccaaatccgtcccgtccccgtccGCTACTCCCATTC
GTGCCCCGTCGGTTCACCAATCTGTTGCCGCCAGTACGCTCACCGCCCTT
GATCAATCCCCATCTgccgccgccgccgccgccgccgctgcTGACCAGCG
CTCTCTCAAGCGTCCGCGCAACAACGCTGCGCGCCCTGCTGAAACCGTCG
ACCGCAAGCCCAAGAAGAAGACTTCGATGCTTGTCGAGGACAAGACCTGT
CGCTATGACAGCAGCCTCGGCTTGCTCACCACCAAGTTCGTCAACCTGCT
CAAGGATAGCAAGGACGGCGTTCTCGATTTGAACATGGCTGCCGAGTGTC
TACACGTACAGAAGAGACGAATCTACGATATCACCAACGTGCTGGAAGGC
ATTGGAATCATCGAGAAGAAGAGCAAGAACAATATCAAGTGGCGTCATCA
ACTCTCCACTACCCCCTCATCGCAGCAGGAGCTCGCCGCCCTCAGAAAGG
AGTTTGACATCCTCAGCGCCGAGGAACGTGACTTGGATCAACAAATAGAC
TCCATGCAGGCCGCCTTGAAGGAGCTTGCATCCGGTGAACAATGTGCCGC
CTATGCCTATGTCACGCATCACGATATTAAGGCTATTCCCGAACTGCGTG
GCGATACGCTCATAGCTATCAAGGCTCCTCCTGGAACTGAGCTCGAGGTC
CCGGATCCTGATGATGGAATGCCATACGGTGAGCGCCGCTACCAGGTGTT
TGTCAAGAGCAACTCCGGCCCTATTGACTGCCTGCTTGTGTCACAGGGCG
GTGAAGATCCTCCAGTCAAGTCTGAACCGTCCACTTCGAGACAAAATGGT
ACCCCGCACTTTACACCCGAGCTTTCCATTGCTAATCCACCTGTACCAAA
TGTGTTGGAGGATGAGGACCAAGATGTCATGGGTATTTTAAGACTTTCAC
CCGCACACACCGAACAAGAGTTCTTCTATTCGTTTGATGATACCGGATTA
GAAGATCACCATGGTCTGGCAGATCTATATGACACCGTCATGACAAACTC
CGAGAAGGGTTTGCCAGATGTGGGCGACATCAGTGCTCCCCCATTATCGG
CTAACGAACAACTTCCAGACGTGCCTTGA
back to top

protein sequence of Ggra5153.t1

>Ggra5153.t1 ID=Ggra5153.t1|Name=Ggra5153.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MASAAAPSSPGPPPPLPPAIASKSVPSPSATPIRAPSVHQSVAASTLTAL
DQSPSAAAAAAAAADQRSLKRPRNNAARPAETVDRKPKKKTSMLVEDKTC
RYDSSLGLLTTKFVNLLKDSKDGVLDLNMAAECLHVQKRRIYDITNVLEG
IGIIEKKSKNNIKWRHQLSTTPSSQQELAALRKEFDILSAEERDLDQQID
SMQAALKELASGEQCAAYAYVTHHDIKAIPELRGDTLIAIKAPPGTELEV
PDPDDGMPYGERRYQVFVKSNSGPIDCLLVSQGGEDPPVKSEPSTSRQNG
TPHFTPELSIANPPVPNVLEDEDQDVMGILRLSPAHTEQEFFYSFDDTGL
EDHHGLADLYDTVMTNSEKGLPDVGDISAPPLSANEQLPDVP*
back to top

mRNA from alignment at tig00000069_pilon:617507..618685+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5153.t1 ID=Ggra5153.t1|Name=Ggra5153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000069_pilon:617507..618685+ (Gracilaria gracilis GNS1m male)
ATGGCTTCCGCTGCCGCTccgtcctcgcccgggccaccgcccccgctccc
ccccgccatcgcgtccaaatccgtcccgtccccgtccGCTACTCCCATTC
GTGCCCCGTCGGTTCACCAATCTGTTGCCGCCAGTACGCTCACCGCCCTT
GATCAATCCCCATCTgccgccgccgccgccgccgccgctgcTGACCAGCG
CTCTCTCAAGCGTCCGCGCAACAACGCTGCGCGCCCTGCTGAAACCGTCG
ACCGCAAGCCCAAGAAGAAGACTTCGATGCTTGTCGAGGACAAGACCTGT
CGCTATGACAGCAGCCTCGGCTTGCTCACCACCAAGTTCGTCAACCTGCT
CAAGGATAGCAAGGACGGCGTTCTCGATTTGAACATGGCTGCCGAGTGTC
TACACGTACAGAAGAGACGAATCTACGATATCACCAACGTGCTGGAAGGC
ATTGGAATCATCGAGAAGAAGAGCAAGAACAATATCAAGTGGCGTCATCA
ACTCTCCACTACCCCCTCATCGCAGCAGGAGCTCGCCGCCCTCAGAAAGG
AGTTTGACATCCTCAGCGCCGAGGAACGTGACTTGGATCAACAAATAGAC
TCCATGCAGGCCGCCTTGAAGGAGCTTGCATCCGGTGAACAATGTGCCGC
CTATGCCTATGTCACGCATCACGATATTAAGGCTATTCCCGAACTGCGTG
GCGATACGCTCATAGCTATCAAGGCTCCTCCTGGAACTGAGCTCGAGGTC
CCGGATCCTGATGATGGAATGCCATACGGTGAGCGCCGCTACCAGGTGTT
TGTCAAGAGCAACTCCGGCCCTATTGACTGCCTGCTTGTGTCACAGGGCG
GTGAAGATCCTCCAGTCAAGTCTGAACCGTCCACTTCGAGACAAAATGGT
ACCCCGCACTTTACACCCGAGCTTTCCATTGCTAATCCACCTGTACCAAA
TGTGTTGGAGGATGAGGACCAAGATGTCATGGGTATTTTAAGACTTTCAC
CCGCACACACCGAACAAGAGTTCTTCTATTCGTTTGATGATACCGGATTA
GAAGATCACCATGGTCTGGCAGATCTATATGACACCGTCATGACAAACTC
CGAGAAGGGTTTGCCAGATGTGGGCGACATCAGTGCTCCCCCATTATCGG
CTAACGAACAACTTCCAGACGTGCCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000069_pilon:617507..618685+

>Ggra5153.t1 ID=Ggra5153.t1|Name=Ggra5153.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000069_pilon:617507..618685+ (Gracilaria gracilis GNS1m male)
ATGGCTTCCGCTGCCGCTccgtcctcgcccgggccaccgcccccgctccc
ccccgccatcgcgtccaaatccgtcccgtccccgtccGCTACTCCCATTC
GTGCCCCGTCGGTTCACCAATCTGTTGCCGCCAGTACGCTCACCGCCCTT
GATCAATCCCCATCTgccgccgccgccgccgccgccgctgcTGACCAGCG
CTCTCTCAAGCGTCCGCGCAACAACGCTGCGCGCCCTGCTGAAACCGTCG
ACCGCAAGCCCAAGAAGAAGACTTCGATGCTTGTCGAGGACAAGACCTGT
CGCTATGACAGCAGCCTCGGCTTGCTCACCACCAAGTTCGTCAACCTGCT
CAAGGATAGCAAGGACGGCGTTCTCGATTTGAACATGGCTGCCGAGTGTC
TACACGTACAGAAGAGACGAATCTACGATATCACCAACGTGCTGGAAGGC
ATTGGAATCATCGAGAAGAAGAGCAAGAACAATATCAAGTGGCGTCATCA
ACTCTCCACTACCCCCTCATCGCAGCAGGAGCTCGCCGCCCTCAGAAAGG
AGTTTGACATCCTCAGCGCCGAGGAACGTGACTTGGATCAACAAATAGAC
TCCATGCAGGCCGCCTTGAAGGAGCTTGCATCCGGTGAACAATGTGCCGC
CTATGCCTATGTCACGCATCACGATATTAAGGCTATTCCCGAACTGCGTG
GCGATACGCTCATAGCTATCAAGGCTCCTCCTGGAACTGAGCTCGAGGTC
CCGGATCCTGATGATGGAATGCCATACGGTGAGCGCCGCTACCAGGTGTT
TGTCAAGAGCAACTCCGGCCCTATTGACTGCCTGCTTGTGTCACAGGGCG
GTGAAGATCCTCCAGTCAAGTCTGAACCGTCCACTTCGAGACAAAATGGT
ACCCCGCACTTTACACCCGAGCTTTCCATTGCTAATCCACCTGTACCAAA
TGTGTTGGAGGATGAGGACCAAGATGTCATGGGTATTTTAAGACTTTCAC
CCGCACACACCGAACAAGAGTTCTTCTATTCGTTTGATGATACCGGATTA
GAAGATCACCATGGTCTGGCAGATCTATATGACACCGTCATGACAAACTC
CGAGAAGGGTTTGCCAGATGTGGGCGACATCAGTGCTCCCCCATTATCGG
CTAACGAACAACTTCCAGACGTGCCTTGA
back to top