Ggra5149.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5149.t1
Unique Name	Ggra5149.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:607843..609255 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX39606
PFAMs	Peptidase_M17,Peptidase_M17_N
Max annot lvl	2759\|Eukaryota
Evalue	1.47e-128
EggNOG OGs	COG0260@1\|root,KOG2597@2759\|Eukaryota
Description	manganese ion binding
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5149	Ggra5149	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 607843..609255 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5149.t1.stop1	Ggra5149.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 607843..607845 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5149.t1.CDS1	Ggra5149.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 607843..609255 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5149.t1.exon1	Ggra5149.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 607843..609255 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5149.t1.start1	Ggra5149.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 609253..609255 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5149.t1	Ggra5149.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 607843..609255 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:607843..609255-
coding sequence from alignment at tig00000069_pilon:607843..609255-

mRNA sequence

>Ggra5149.t1 ID=Ggra5149.t1|Name=Ggra5149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MSSVLSANRFRSNFSESYEGTLIDLVPKAEWDDYVERQLPVQKVWLAAHG
SPTSPTPVPAADASIDRFVLPIKPGSQNLWRLAAAFSGLPKGKLYTINEA
AGFDNITIELAWGLTAYAFTQYKKQEEEPEEPISLVRRTTSGSPERAHVD
RALQATYMVRDMISTPAEDFGPPNLEAAVSTLAAQHAASSSSIVGQQLLQ
HDYPQVHRVGRAASTDRAPRLIELVWNQSAKRGLTLVGKGVCYDTGGLSL
KPTNSMITMSKDMGGAAHVLGLAHMIMDAKLDVRLRVLIPAVENAVGSNS
FRPGDILTARNGTTTLNSNSDAEGRLILADALVAATEDDPELIIDCATLT
GAQRVALGPEIPGVFCDDDEIADQLYSMGKKVEDLVWRLPLHEPYRKLLD
TPLADIKSCSSGGLGGAITAALYLKEFVGDAKWIHIDLMAYNSTSSPGRP
EGGEAMGLRALFELVRERFS*

spliced messenger RNA

>Ggra5149.t1 ID=Ggra5149.t1|Name=Ggra5149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000069_pilon:607843..609255- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCGTACTTTCGGCCAATCGCTTCCGATCCAATTTTTCGGAGTC
TTACGAAGGGACACTCATAGACCTCGTTCCTAAAGCTGAATGGGATGACT
ACGTCGAACGTCAACTTCCAGTGCAGAAAGTCTGGCTCGCAGCCCATGGA
AGTCCTACATCGCCTACACCGGTTCCAGCCGCGGATGCCTCCATAGACCG
TTTTGTTCTACCAATCAAGCCTGGATCCCAGAACCTATGGCGACTCGCAG
CAGCGTTCTCCGGTCTGCCAAAAGGCAAATTGTACACAATAAACGAAGCT
GCTGGCTTCGACAACATCACCATCGAACTTGCCTGGGGCCTCACGGCTTA
TGCGTTTACACAGTACAAAAAGCAAGAGGAAGAACCCGAAGAACCTATAA
GCCTTGTTCGTCGAACAACTTCAGGAAGCCCAGAACGAGCACATGTTGAC
AGAGCCCTACAAGCAACATATATGGTGCGCGATATGATCTCAACTCCGGC
AGAAGACTTTGGACCTCCAAACCTTGAGGCTGCAGTTTCCACATTAGCTG
CCCAGCACGCTGCAAGTTCCTCATCCATTGTTGGGCAACAACTTTTGCAA
CACGACTATCCTCAAGTACATCGGGTTGGTCGGGCGGCCAGCACCGACAG
GGCACCGAGACTTATTGAACTTGTTTGGAACCAGTCGGCAAAAAGAGGCC
TCACGCTTGTTGGGAAGGGAGTCTGTTACGATACTGGTGGACTCAGCCTA
AAACCAACAAACTCGATGATCACTATGAGCAAGGATATGGGAGGTGCTGC
CCATGTGTTGGGACTTGCTCACATGATTATGGATGCCAAATTGGATGTAC
GCCTAAGAGTGCTTATTCCCGCAGTAGAGAACGCAGTTGGCAGCAACAGT
TTTCGCCCTGGTGACATACTGACAGCTCGAAATGGTACGACAACGCTCAA
TTCCAATTCAGATGCCGAAGGCCGTCTCATTCTTGCGGATGCCTTGGTTG
CTGCAACGGAGGACGATCCCGAGTTAATCATAGACTGTGCAACATTAACT
GGAGCGCAGAGAGTGGCATTAGGGCCAGAGATCCCTGGGGTGTTTTGTGA
TGATGACGAGATTGCCGATCAGCTGTATTCAATGGGCAAGAAAGTTGAAG
ACCTGGTTTGGAGATTGCCTCTTCACGAACCGTATCGCAAACTCCTTGAT
ACACCTCTTGCAGATATCAAGAGTTGTAGCAGCGGTGGACTCGGTGGCGC
TATCACTGCAGCGCTTTATCTGAAGGAATTTGTGGGCGATGCAAAGTGGA
TACATATTGATTTGATGGCGTATAACAGCACTTCCAGTCCTGGCAGACCT
GAAGGAGGCGAAGCAATGGGGCTTCGCGCTCTCTTTGAACTTGTTAGAGA
GCGCTTCTCATGA

protein sequence of Ggra5149.t1

>Ggra5149.t1 ID=Ggra5149.t1|Name=Ggra5149.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MSSVLSANRFRSNFSESYEGTLIDLVPKAEWDDYVERQLPVQKVWLAAHG
SPTSPTPVPAADASIDRFVLPIKPGSQNLWRLAAAFSGLPKGKLYTINEA
AGFDNITIELAWGLTAYAFTQYKKQEEEPEEPISLVRRTTSGSPERAHVD
RALQATYMVRDMISTPAEDFGPPNLEAAVSTLAAQHAASSSSIVGQQLLQ
HDYPQVHRVGRAASTDRAPRLIELVWNQSAKRGLTLVGKGVCYDTGGLSL
KPTNSMITMSKDMGGAAHVLGLAHMIMDAKLDVRLRVLIPAVENAVGSNS
FRPGDILTARNGTTTLNSNSDAEGRLILADALVAATEDDPELIIDCATLT
GAQRVALGPEIPGVFCDDDEIADQLYSMGKKVEDLVWRLPLHEPYRKLLD
TPLADIKSCSSGGLGGAITAALYLKEFVGDAKWIHIDLMAYNSTSSPGRP
EGGEAMGLRALFELVRERFS*

mRNA from alignment at tig00000069_pilon:607843..609255-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5149.t1 ID=Ggra5149.t1|Name=Ggra5149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000069_pilon:607843..609255- (Gracilaria gracilis GNS1m male)
ATGTCCTCCGTACTTTCGGCCAATCGCTTCCGATCCAATTTTTCGGAGTC
TTACGAAGGGACACTCATAGACCTCGTTCCTAAAGCTGAATGGGATGACT
ACGTCGAACGTCAACTTCCAGTGCAGAAAGTCTGGCTCGCAGCCCATGGA
AGTCCTACATCGCCTACACCGGTTCCAGCCGCGGATGCCTCCATAGACCG
TTTTGTTCTACCAATCAAGCCTGGATCCCAGAACCTATGGCGACTCGCAG
CAGCGTTCTCCGGTCTGCCAAAAGGCAAATTGTACACAATAAACGAAGCT
GCTGGCTTCGACAACATCACCATCGAACTTGCCTGGGGCCTCACGGCTTA
TGCGTTTACACAGTACAAAAAGCAAGAGGAAGAACCCGAAGAACCTATAA
GCCTTGTTCGTCGAACAACTTCAGGAAGCCCAGAACGAGCACATGTTGAC
AGAGCCCTACAAGCAACATATATGGTGCGCGATATGATCTCAACTCCGGC
AGAAGACTTTGGACCTCCAAACCTTGAGGCTGCAGTTTCCACATTAGCTG
CCCAGCACGCTGCAAGTTCCTCATCCATTGTTGGGCAACAACTTTTGCAA
CACGACTATCCTCAAGTACATCGGGTTGGTCGGGCGGCCAGCACCGACAG
GGCACCGAGACTTATTGAACTTGTTTGGAACCAGTCGGCAAAAAGAGGCC
TCACGCTTGTTGGGAAGGGAGTCTGTTACGATACTGGTGGACTCAGCCTA
AAACCAACAAACTCGATGATCACTATGAGCAAGGATATGGGAGGTGCTGC
CCATGTGTTGGGACTTGCTCACATGATTATGGATGCCAAATTGGATGTAC
GCCTAAGAGTGCTTATTCCCGCAGTAGAGAACGCAGTTGGCAGCAACAGT
TTTCGCCCTGGTGACATACTGACAGCTCGAAATGGTACGACAACGCTCAA
TTCCAATTCAGATGCCGAAGGCCGTCTCATTCTTGCGGATGCCTTGGTTG
CTGCAACGGAGGACGATCCCGAGTTAATCATAGACTGTGCAACATTAACT
GGAGCGCAGAGAGTGGCATTAGGGCCAGAGATCCCTGGGGTGTTTTGTGA
TGATGACGAGATTGCCGATCAGCTGTATTCAATGGGCAAGAAAGTTGAAG
ACCTGGTTTGGAGATTGCCTCTTCACGAACCGTATCGCAAACTCCTTGAT
ACACCTCTTGCAGATATCAAGAGTTGTAGCAGCGGTGGACTCGGTGGCGC
TATCACTGCAGCGCTTTATCTGAAGGAATTTGTGGGCGATGCAAAGTGGA
TACATATTGATTTGATGGCGTATAACAGCACTTCCAGTCCTGGCAGACCT
GAAGGAGGCGAAGCAATGGGGCTTCGCGCTCTCTTTGAACTTGTTAGAGA
GCGCTTCTCATGA

Coding sequence (CDS) from alignment at tig00000069_pilon:607843..609255-

>Ggra5149.t1 ID=Ggra5149.t1|Name=Ggra5149.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000069_pilon:607843..609255- (Gracilaria gracilis GNS1m male)
ATGTCCTCCGTACTTTCGGCCAATCGCTTCCGATCCAATTTTTCGGAGTC
TTACGAAGGGACACTCATAGACCTCGTTCCTAAAGCTGAATGGGATGACT
ACGTCGAACGTCAACTTCCAGTGCAGAAAGTCTGGCTCGCAGCCCATGGA
AGTCCTACATCGCCTACACCGGTTCCAGCCGCGGATGCCTCCATAGACCG
TTTTGTTCTACCAATCAAGCCTGGATCCCAGAACCTATGGCGACTCGCAG
CAGCGTTCTCCGGTCTGCCAAAAGGCAAATTGTACACAATAAACGAAGCT
GCTGGCTTCGACAACATCACCATCGAACTTGCCTGGGGCCTCACGGCTTA
TGCGTTTACACAGTACAAAAAGCAAGAGGAAGAACCCGAAGAACCTATAA
GCCTTGTTCGTCGAACAACTTCAGGAAGCCCAGAACGAGCACATGTTGAC
AGAGCCCTACAAGCAACATATATGGTGCGCGATATGATCTCAACTCCGGC
AGAAGACTTTGGACCTCCAAACCTTGAGGCTGCAGTTTCCACATTAGCTG
CCCAGCACGCTGCAAGTTCCTCATCCATTGTTGGGCAACAACTTTTGCAA
CACGACTATCCTCAAGTACATCGGGTTGGTCGGGCGGCCAGCACCGACAG
GGCACCGAGACTTATTGAACTTGTTTGGAACCAGTCGGCAAAAAGAGGCC
TCACGCTTGTTGGGAAGGGAGTCTGTTACGATACTGGTGGACTCAGCCTA
AAACCAACAAACTCGATGATCACTATGAGCAAGGATATGGGAGGTGCTGC
CCATGTGTTGGGACTTGCTCACATGATTATGGATGCCAAATTGGATGTAC
GCCTAAGAGTGCTTATTCCCGCAGTAGAGAACGCAGTTGGCAGCAACAGT
TTTCGCCCTGGTGACATACTGACAGCTCGAAATGGTACGACAACGCTCAA
TTCCAATTCAGATGCCGAAGGCCGTCTCATTCTTGCGGATGCCTTGGTTG
CTGCAACGGAGGACGATCCCGAGTTAATCATAGACTGTGCAACATTAACT
GGAGCGCAGAGAGTGGCATTAGGGCCAGAGATCCCTGGGGTGTTTTGTGA
TGATGACGAGATTGCCGATCAGCTGTATTCAATGGGCAAGAAAGTTGAAG
ACCTGGTTTGGAGATTGCCTCTTCACGAACCGTATCGCAAACTCCTTGAT
ACACCTCTTGCAGATATCAAGAGTTGTAGCAGCGGTGGACTCGGTGGCGC
TATCACTGCAGCGCTTTATCTGAAGGAATTTGTGGGCGATGCAAAGTGGA
TACATATTGATTTGATGGCGTATAACAGCACTTCCAGTCCTGGCAGACCT
GAAGGAGGCGAAGCAATGGGGCTTCGCGCTCTCTTTGAACTTGTTAGAGA
GCGCTTCTCATGA