Ggra5145.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5145.t1
Unique NameGgra5145.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length820
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:592171..594630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue1.91e-22
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5145Ggra5145Gracilaria gracilis GNS1m malegenetig00000069_pilon 592171..594630 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5145.t1.stop1Ggra5145.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 592171..592173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5145.t1.CDS1Ggra5145.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 592171..594630 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5145.t1.exon1Ggra5145.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 592171..594630 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5145.t1.start1Ggra5145.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 594628..594630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5145.t1Ggra5145.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 592171..594630 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5145.t1 ID=Ggra5145.t1|Name=Ggra5145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=820bp
MSCVKPFWLACLACLLLCVAAETPLRQLSFLPKGPGRPAFVAPQIQLPTL
PSSSTSDAPPAAPAPAPASAPAPAPAPALADAPPAQAEADTDAAQDAVDA
DVVDTDAIDTDAVNVDVDVAQVDSVESSETQQSPAAVPSASPSASPPPSV
SPVALAPTVSPAPSAAPVADAVLAPVVQPPPSVLTPIPTAAGNGQGYFPC
HPNKATKQTTVTCTHVQMPPAMCSRCALKPVTAQGMFKRCDDIFELETPP
CQQALDEYVALNGACDPVRTSHVAAWKAGDAAAATELDYFLYSVCELCCD
CVPMGTAVDEYASLKAAHTPQNPTLWAVDRGNCPAHAEYDLCNVLPNVQA
VIKPGEPVIAKPSACPPLSVWLNSDRSTNWQVNPDASIDASTRDFLNSAL
NALECDGESVWRTCYHMEDLQNHIDIPQDVASVPVQDDTAAAQLTTPAVV
TDPTAAADPVTPAAVPVSPATPATAAPAAPVPAAPVPAAPEPAAPEPAAP
EPAAPEPAAPEPAAAAPSAPTPVAPAPAAPAPAAPAPAAPAPAAPASPAT
ATDKDSATADAPASTAPITPIAATTTTDTASTSTTSAPDDTTTALPASDG
ETTDGASPMTVGGQENGIYGSPSPSPASDGGSCFPASATVELHSGLHIPM
HQLRIGDRVRVSADQFSEVYMFSHRDVKASDPSYVRIFTMEASVTMTAGH
YLPVVKNVTRTGNIFVQAESVEIGDRLQLASGQWSFVTDVLPTEAIGLFN
PHTLAGTICVDGVVASTFTRSVSADAAQALLSPIRALYWLGIAGERLAGN
WFVQGVDRSLTSFAQTIRL*
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spliced messenger RNA

>Ggra5145.t1 ID=Ggra5145.t1|Name=Ggra5145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2460bp|location=Sequence derived from alignment at tig00000069_pilon:592171..594630- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGTGTCAAGCCCTTCTGGCTCGCTTGCCTTGCTTGCTTGCTGCT
TTGCGTCGCCGCCGAGACGCCGCTGCGACAGCTCTCTTTTTTGCCAAAGG
GACCGGGGCGTCCTGCCTTTGTTGCGCCTCAAATTCAGCTTCCCACTCTG
CCGTCATCGTCCACATCCGACGCGCCGCCTGCTGCACCAGCTCCCGCTCC
CGCTTCCGCTCCTGCGCCTGCGCCTGCGCCTGCTCTTGCTGACGCCCCGC
CGGCTCAAGCAGAGGCTGATACCGACGCTGCTCAAGATGCCGTCGATGCC
GATGTCGTCGATACCGATGCCATCGATACTGATGCCGTCAATGTCGATGT
CGATGTCGCCCAAGTCGACTCCGTTGAATCGTCCGAAACTCAGCAGTCAC
CAGCTGCTGTACCATCTGCCTCACCATCAGCGTCGCCACCGCCTTCCGTA
TCTCCAGTTGCATTAGCACCCACCGTATCGCCTGCACCTTCTGCTGCTCC
TGTTGCTGATGCTGTTCTCGCTCCTGTCGTACAGCCACCGCCGTCTGTGC
TTACCCCAATTCCCACCGCCGCTGGCAATGGCCAGGGTTACTTCCCGTGC
CATCCGAACAAGGCCACCAAGCAGACCACCGTCACCTGTACGCATGTTCA
AATGCCCCCAGCCATGTGTTCGCGATGCGCTTTGAAGCCGGTTACCGCTC
AAGGCATGTTCAAGCGTTGCGACGATATCTTTGAGCTTGAAACACCGCCT
TGTCAACAAGCGCTTGACGAATATGTCGCTCTTAATGGCGCTTGTGACCC
TGTTAGAACGAGCCATGTAGCCGCGTGGAAGGCCGGAGACGCCGCCGCTG
CCACAGAGCTTGATTACTTTTTGTACTCTGTTTGTGAGCTTTGCTGCGAT
TGTGTTCCGATGGGTACTGCTGTCGATGAGTATGCGTCGTTGAAGGCCGC
TCACACGCCGCAAAACCCAACGCTCTGGGCTGTTGATAGGGGAAATTGTC
CGGCTCATGCCGAGTATGACCTTTGCAACGTGCTCCCCAATGTGCAAGCT
GTTATCAAGCCTGGCGAGCCTGTAATCGCAAAACCGTCAGCTTGTCCGCC
TCTGAGCGTTTGGCTCAATTCGGACCGCTCTACAAACTGGCAAGTCAATC
CAGATGCCTCAATCGACGCTTCCACCAGGGATTTCTTGAACAGCGCTCTC
AATGCATTGGAATGCGATGGCGAGAGCGTTTGGCGCACTTGCTATCATAT
GGAGGATTTGCAAAACCACATTGACATTCCCCAAGATGTTGCTTCTGTTC
CTGTGCAGGATGATACTGCCGCCGCACAGCTTACTACACCTGCTGTCGTT
ACCGACCCTACCGCCGCTGCAGATCCTGTCACCCCTGCAGCGGTTCCTGT
TAGCCCTGCAACCCCTGCCACTGCTGCGCCTGCCGCTCCCGTGCCTGCCG
CTCCCGTGCCTGCCGCTCCCGAGCCTGCCGCTCCCGAGCCTGCCGCTCCC
GAGCCTGCCGCTCCCGAGCCTGCCGCTCCCGAGCCTGCAGCTGCTGCGCC
GTCGGCTCCTACGCCTGTGGCTCCTGCGCCTGCAGCTCCTGCTCCCGCAG
CTCCCGCTCCCGCAGCTCCCGCTCCTGCGGCGCCTGCGTCACCTGCGACA
GCTACTGACAAAGACTCCGCTACAGCTGATGCCCCCGCTTCTACAGCACC
TATCACTCCCATTGCTGCTACCACGACTACTGACACTGCAAGTACATCAA
CTACTTCTGCACCAGATGATACCACTACTGCTCTTCCGGCATCTGACGGC
GAGACCACTGATGGGGCGTCGCCGATGACTGTTGGTGGCCAAGAGAATGG
AATATATGGTTCTCCGTCTCCTTCTCCTGCCAGCGATGGAGGCTCCTGTT
TCCCTGCCAGCGCTACAGTTGAGCTCCACTCTGGATTACACATTCCGATG
CACCAACTCAGAATTGGTGATCGTGTTCGCGTGTCTGCTGATCAGTTTTC
AGAGGTTTACATGTTTTCACACCGCGATGTCAAAGCTTCAGATCCGTCAT
ACGTACGCATCTTCACGATGGAGGCTTCTGTAACAATGACAGCAGGACAC
TACCTGCCAGTCGTCAAGAACGTCACAAGAACAGGCAACATATTTGTACA
GGCAGAGTCCGTTGAGATTGGAGATCGTTTGCAGCTTGCTTCTGGGCAAT
GGTCGTTTGTAACTGATGTTCTGCCGACTGAAGCAATTGGTTTGTTCAAC
CCCCATACTTTGGCGGGTACTATCTGTGTGGATGGTGTGGTGGCATCGAC
TTTCACTCGTTCCGTGTCTGCAGATGCTGCGCAGGCCTTGTTATCGCCGA
TTAGAGCCTTGTATTGGTTGGGAATTGCTGGTGAGAGACTCGCAGGGAAC
TGGTTTGTGCAAGGTGTTGATCGAAGCTTGACATCCTTTGCTCAAACAAT
TCGACTGTGA
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protein sequence of Ggra5145.t1

>Ggra5145.t1 ID=Ggra5145.t1|Name=Ggra5145.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=820bp
MSCVKPFWLACLACLLLCVAAETPLRQLSFLPKGPGRPAFVAPQIQLPTL
PSSSTSDAPPAAPAPAPASAPAPAPAPALADAPPAQAEADTDAAQDAVDA
DVVDTDAIDTDAVNVDVDVAQVDSVESSETQQSPAAVPSASPSASPPPSV
SPVALAPTVSPAPSAAPVADAVLAPVVQPPPSVLTPIPTAAGNGQGYFPC
HPNKATKQTTVTCTHVQMPPAMCSRCALKPVTAQGMFKRCDDIFELETPP
CQQALDEYVALNGACDPVRTSHVAAWKAGDAAAATELDYFLYSVCELCCD
CVPMGTAVDEYASLKAAHTPQNPTLWAVDRGNCPAHAEYDLCNVLPNVQA
VIKPGEPVIAKPSACPPLSVWLNSDRSTNWQVNPDASIDASTRDFLNSAL
NALECDGESVWRTCYHMEDLQNHIDIPQDVASVPVQDDTAAAQLTTPAVV
TDPTAAADPVTPAAVPVSPATPATAAPAAPVPAAPVPAAPEPAAPEPAAP
EPAAPEPAAPEPAAAAPSAPTPVAPAPAAPAPAAPAPAAPAPAAPASPAT
ATDKDSATADAPASTAPITPIAATTTTDTASTSTTSAPDDTTTALPASDG
ETTDGASPMTVGGQENGIYGSPSPSPASDGGSCFPASATVELHSGLHIPM
HQLRIGDRVRVSADQFSEVYMFSHRDVKASDPSYVRIFTMEASVTMTAGH
YLPVVKNVTRTGNIFVQAESVEIGDRLQLASGQWSFVTDVLPTEAIGLFN
PHTLAGTICVDGVVASTFTRSVSADAAQALLSPIRALYWLGIAGERLAGN
WFVQGVDRSLTSFAQTIRL*
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mRNA from alignment at tig00000069_pilon:592171..594630-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5145.t1 ID=Ggra5145.t1|Name=Ggra5145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2460bp|location=Sequence derived from alignment at tig00000069_pilon:592171..594630- (Gracilaria gracilis GNS1m male)
ATGAGCTGTGTCAAGCCCTTCTGGCTCGCTTGCCTTGCTTGCTTGCTGCT TTGCGTCGCCGCCGAGACGCCGCTGCGACAGCTCTCTTTTTTGCCAAAGG GACCGGGGCGTCCTGCCTTTGTTGCGCCTCAAATTCAGCTTCCCACTCTG CCGTCATCGTCCACATCCGACGCGCCGCCTGCTGCACCAGCTCCCGCTCC CGCTTCCGCTCCTGCGCCTGCGCCTGCGCCTGCTCTTGCTGACGCCCCGC CGGCTCAAGCAGAGGCTGATACCGACGCTGCTCAAGATGCCGTCGATGCC GATGTCGTCGATACCGATGCCATCGATACTGATGCCGTCAATGTCGATGT CGATGTCGCCCAAGTCGACTCCGTTGAATCGTCCGAAACTCAGCAGTCAC CAGCTGCTGTACCATCTGCCTCACCATCAGCGTCGCCACCGCCTTCCGTA TCTCCAGTTGCATTAGCACCCACCGTATCGCCTGCACCTTCTGCTGCTCC TGTTGCTGATGCTGTTCTCGCTCCTGTCGTACAGCCACCGCCGTCTGTGC TTACCCCAATTCCCACCGCCGCTGGCAATGGCCAGGGTTACTTCCCGTGC CATCCGAACAAGGCCACCAAGCAGACCACCGTCACCTGTACGCATGTTCA AATGCCCCCAGCCATGTGTTCGCGATGCGCTTTGAAGCCGGTTACCGCTC AAGGCATGTTCAAGCGTTGCGACGATATCTTTGAGCTTGAAACACCGCCT TGTCAACAAGCGCTTGACGAATATGTCGCTCTTAATGGCGCTTGTGACCC TGTTAGAACGAGCCATGTAGCCGCGTGGAAGGCCGGAGACGCCGCCGCTG CCACAGAGCTTGATTACTTTTTGTACTCTGTTTGTGAGCTTTGCTGCGAT TGTGTTCCGATGGGTACTGCTGTCGATGAGTATGCGTCGTTGAAGGCCGC TCACACGCCGCAAAACCCAACGCTCTGGGCTGTTGATAGGGGAAATTGTC CGGCTCATGCCGAGTATGACCTTTGCAACGTGCTCCCCAATGTGCAAGCT GTTATCAAGCCTGGCGAGCCTGTAATCGCAAAACCGTCAGCTTGTCCGCC TCTGAGCGTTTGGCTCAATTCGGACCGCTCTACAAACTGGCAAGTCAATC CAGATGCCTCAATCGACGCTTCCACCAGGGATTTCTTGAACAGCGCTCTC AATGCATTGGAATGCGATGGCGAGAGCGTTTGGCGCACTTGCTATCATAT GGAGGATTTGCAAAACCACATTGACATTCCCCAAGATGTTGCTTCTGTTC CTGTGCAGGATGATACTGCCGCCGCACAGCTTACTACACCTGCTGTCGTT ACCGACCCTACCGCCGCTGCAGATCCTGTCACCCCTGCAGCGGTTCCTGT TAGCCCTGCAACCCCTGCCACTGCTGCGCCTGCCGCTCCCGTGCCTGCCG CTCCCGTGCCTGCCGCTCCCGAGCCTGCCGCTCCCGAGCCTGCCGCTCCC GAGCCTGCCGCTCCCGAGCCTGCCGCTCCCGAGCCTGCAGCTGCTGCGCC GTCGGCTCCTACGCCTGTGGCTCCTGCGCCTGCAGCTCCTGCTCCCGCAG CTCCCGCTCCCGCAGCTCCCGCTCCTGCGGCGCCTGCGTCACCTGCGACA GCTACTGACAAAGACTCCGCTACAGCTGATGCCCCCGCTTCTACAGCACC TATCACTCCCATTGCTGCTACCACGACTACTGACACTGCAAGTACATCAA CTACTTCTGCACCAGATGATACCACTACTGCTCTTCCGGCATCTGACGGC GAGACCACTGATGGGGCGTCGCCGATGACTGTTGGTGGCCAAGAGAATGG AATATATGGTTCTCCGTCTCCTTCTCCTGCCAGCGATGGAGGCTCCTGTT TCCCTGCCAGCGCTACAGTTGAGCTCCACTCTGGATTACACATTCCGATG CACCAACTCAGAATTGGTGATCGTGTTCGCGTGTCTGCTGATCAGTTTTC AGAGGTTTACATGTTTTCACACCGCGATGTCAAAGCTTCAGATCCGTCAT ACGTACGCATCTTCACGATGGAGGCTTCTGTAACAATGACAGCAGGACAC TACCTGCCAGTCGTCAAGAACGTCACAAGAACAGGCAACATATTTGTACA GGCAGAGTCCGTTGAGATTGGAGATCGTTTGCAGCTTGCTTCTGGGCAAT GGTCGTTTGTAACTGATGTTCTGCCGACTGAAGCAATTGGTTTGTTCAAC CCCCATACTTTGGCGGGTACTATCTGTGTGGATGGTGTGGTGGCATCGAC TTTCACTCGTTCCGTGTCTGCAGATGCTGCGCAGGCCTTGTTATCGCCGA TTAGAGCCTTGTATTGGTTGGGAATTGCTGGTGAGAGACTCGCAGGGAAC TGGTTTGTGCAAGGTGTTGATCGAAGCTTGACATCCTTTGCTCAAACAAT TCGACTGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:592171..594630-

>Ggra5145.t1 ID=Ggra5145.t1|Name=Ggra5145.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2460bp|location=Sequence derived from alignment at tig00000069_pilon:592171..594630- (Gracilaria gracilis GNS1m male)
ATGAGCTGTGTCAAGCCCTTCTGGCTCGCTTGCCTTGCTTGCTTGCTGCT
TTGCGTCGCCGCCGAGACGCCGCTGCGACAGCTCTCTTTTTTGCCAAAGG
GACCGGGGCGTCCTGCCTTTGTTGCGCCTCAAATTCAGCTTCCCACTCTG
CCGTCATCGTCCACATCCGACGCGCCGCCTGCTGCACCAGCTCCCGCTCC
CGCTTCCGCTCCTGCGCCTGCGCCTGCGCCTGCTCTTGCTGACGCCCCGC
CGGCTCAAGCAGAGGCTGATACCGACGCTGCTCAAGATGCCGTCGATGCC
GATGTCGTCGATACCGATGCCATCGATACTGATGCCGTCAATGTCGATGT
CGATGTCGCCCAAGTCGACTCCGTTGAATCGTCCGAAACTCAGCAGTCAC
CAGCTGCTGTACCATCTGCCTCACCATCAGCGTCGCCACCGCCTTCCGTA
TCTCCAGTTGCATTAGCACCCACCGTATCGCCTGCACCTTCTGCTGCTCC
TGTTGCTGATGCTGTTCTCGCTCCTGTCGTACAGCCACCGCCGTCTGTGC
TTACCCCAATTCCCACCGCCGCTGGCAATGGCCAGGGTTACTTCCCGTGC
CATCCGAACAAGGCCACCAAGCAGACCACCGTCACCTGTACGCATGTTCA
AATGCCCCCAGCCATGTGTTCGCGATGCGCTTTGAAGCCGGTTACCGCTC
AAGGCATGTTCAAGCGTTGCGACGATATCTTTGAGCTTGAAACACCGCCT
TGTCAACAAGCGCTTGACGAATATGTCGCTCTTAATGGCGCTTGTGACCC
TGTTAGAACGAGCCATGTAGCCGCGTGGAAGGCCGGAGACGCCGCCGCTG
CCACAGAGCTTGATTACTTTTTGTACTCTGTTTGTGAGCTTTGCTGCGAT
TGTGTTCCGATGGGTACTGCTGTCGATGAGTATGCGTCGTTGAAGGCCGC
TCACACGCCGCAAAACCCAACGCTCTGGGCTGTTGATAGGGGAAATTGTC
CGGCTCATGCCGAGTATGACCTTTGCAACGTGCTCCCCAATGTGCAAGCT
GTTATCAAGCCTGGCGAGCCTGTAATCGCAAAACCGTCAGCTTGTCCGCC
TCTGAGCGTTTGGCTCAATTCGGACCGCTCTACAAACTGGCAAGTCAATC
CAGATGCCTCAATCGACGCTTCCACCAGGGATTTCTTGAACAGCGCTCTC
AATGCATTGGAATGCGATGGCGAGAGCGTTTGGCGCACTTGCTATCATAT
GGAGGATTTGCAAAACCACATTGACATTCCCCAAGATGTTGCTTCTGTTC
CTGTGCAGGATGATACTGCCGCCGCACAGCTTACTACACCTGCTGTCGTT
ACCGACCCTACCGCCGCTGCAGATCCTGTCACCCCTGCAGCGGTTCCTGT
TAGCCCTGCAACCCCTGCCACTGCTGCGCCTGCCGCTCCCGTGCCTGCCG
CTCCCGTGCCTGCCGCTCCCGAGCCTGCCGCTCCCGAGCCTGCCGCTCCC
GAGCCTGCCGCTCCCGAGCCTGCCGCTCCCGAGCCTGCAGCTGCTGCGCC
GTCGGCTCCTACGCCTGTGGCTCCTGCGCCTGCAGCTCCTGCTCCCGCAG
CTCCCGCTCCCGCAGCTCCCGCTCCTGCGGCGCCTGCGTCACCTGCGACA
GCTACTGACAAAGACTCCGCTACAGCTGATGCCCCCGCTTCTACAGCACC
TATCACTCCCATTGCTGCTACCACGACTACTGACACTGCAAGTACATCAA
CTACTTCTGCACCAGATGATACCACTACTGCTCTTCCGGCATCTGACGGC
GAGACCACTGATGGGGCGTCGCCGATGACTGTTGGTGGCCAAGAGAATGG
AATATATGGTTCTCCGTCTCCTTCTCCTGCCAGCGATGGAGGCTCCTGTT
TCCCTGCCAGCGCTACAGTTGAGCTCCACTCTGGATTACACATTCCGATG
CACCAACTCAGAATTGGTGATCGTGTTCGCGTGTCTGCTGATCAGTTTTC
AGAGGTTTACATGTTTTCACACCGCGATGTCAAAGCTTCAGATCCGTCAT
ACGTACGCATCTTCACGATGGAGGCTTCTGTAACAATGACAGCAGGACAC
TACCTGCCAGTCGTCAAGAACGTCACAAGAACAGGCAACATATTTGTACA
GGCAGAGTCCGTTGAGATTGGAGATCGTTTGCAGCTTGCTTCTGGGCAAT
GGTCGTTTGTAACTGATGTTCTGCCGACTGAAGCAATTGGTTTGTTCAAC
CCCCATACTTTGGCGGGTACTATCTGTGTGGATGGTGTGGTGGCATCGAC
TTTCACTCGTTCCGTGTCTGCAGATGCTGCGCAGGCCTTGTTATCGCCGA
TTAGAGCCTTGTATTGGTTGGGAATTGCTGGTGAGAGACTCGCAGGGAAC
TGGTTTGTGCAAGGTGTTGATCGAAGCTTGACATCCTTTGCTCAAACAAT
TCGACTGTGA
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