Ggra5144.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5144.t1
Unique NameGgra5144.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:583660..585111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5144Ggra5144Gracilaria gracilis GNS1m malegenetig00000069_pilon 583660..585111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5144.t1Ggra5144.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 583660..585111 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5144.t1.stop1Ggra5144.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 583660..583662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5144.t1.CDS1Ggra5144.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 583660..584892 -
Ggra5144.t1.CDS2Ggra5144.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 585055..585111 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5144.t1.exon1Ggra5144.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 583660..584892 -
Ggra5144.t1.exon2Ggra5144.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 585055..585111 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5144.t1.intron1Ggra5144.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 584893..585054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5144.t1.start1Ggra5144.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 585109..585111 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5144.t1 ID=Ggra5144.t1|Name=Ggra5144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MHHNFGRDIRFMKSFAARKHFLKAVRPYTALREVDKELAGIQYLEAPQLR
ESDVDALTILVKDYIQFHRRNRYNASRILIYRPRRTGLGDRLNVLAFAFW
AASISGRLFLVDWQYPFPLTQLFQNANPHVDMFFNQPVDDPRKETFSAYP
SSTLKFLKANEQGFKEYESAIFSSVRTLVVEMHYKPNLTRQFVEKNFPPG
VLPAYINGMAATIPFFRIVFHHIFKLSKDVLDYQNQVSKRMRLRPAYSIH
SQHAHGPVEEFDESARPYIAVHARVGTGVGEVGEKGRFVDISRDMKTGAM
CLASRAVRLAHMSGQPPLPIYLATDTPSFRAVFREVVELFSHGRVEVIVG
DWEVVHINAFTLPNNSRGAQTPKQQRALRDVYVDFVTLGHAEHVVALYSS
FPRLAQGVGTARTLTELRNEVCFKVDKWK*
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spliced messenger RNA

>Ggra5144.t1 ID=Ggra5144.t1|Name=Ggra5144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000069_pilon:583660..585111- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCATAATTTCGGAAGAGACATTCGGTTCATGAAATCGTTCGCCGC
CCGGAAGCACTTTCTCAAGGCGGTTCGGCCATACACCGCTTTAAGAGAGG
TGGACAAGGAATTGGCGGGAATCCAGTACTTGGAAGCGCCACAACTACGA
GAAAGTGATGTTGATGCTCTAACAATCTTGGTAAAAGATTATATCCAGTT
CCACAGGCGAAACAGGTATAATGCATCGCGAATCCTCATATACAGACCAC
GACGAACTGGTCTGGGCGATCGTCTAAATGTTTTGGCGTTTGCTTTCTGG
GCTGCCTCTATTTCTGGACGTCTATTTCTTGTTGACTGGCAGTATCCGTT
TCCACTCACGCAACTGTTTCAAAACGCAAACCCCCATGTCGACATGTTCT
TTAACCAACCGGTGGACGATCCCAGAAAGGAAACGTTTAGCGCATATCCT
TCTTCAACATTGAAATTTCTCAAGGCAAATGAGCAAGGATTCAAGGAATA
CGAATCCGCTATCTTCTCAAGTGTGAGAACTTTGGTCGTGGAGATGCATT
ACAAACCGAATTTAACGAGGCAATTCGTTGAGAAGAACTTCCCTCCGGGA
GTCCTCCCGGCCTATATTAATGGCATGGCCGCCACCATTCCCTTTTTCCG
CATTGTGTTTCATCACATCTTCAAGCTGAGCAAGGATGTGCTTGATTATC
AAAATCAAGTGAGTAAGCGAATGAGACTTCGGCCGGCGTACTCCATTCAT
TCTCAGCATGCTCACGGTCCTGTCGAAGAGTTTGATGAAAGTGCCAGACC
GTATATTGCAGTACACGCAAGGGTGGGTACGGGAGTAGGAGAAGTCGGAG
AGAAAGGTAGATTTGTGGACATTAGTCGGGACATGAAGACAGGGGCCATG
TGCTTGGCTTCCAGGGCAGTCAGATTGGCGCACATGTCTGGACAACCACC
GCTTCCGATCTACTTGGCGACTGATACACCATCATTTCGGGCCGTGTTCC
GTGAAGTAGTGGAGCTTTTTAGCCACGGACGGGTTGAAGTCATTGTTGGA
GATTGGGAGGTGGTACACATAAATGCGTTTACGCTTCCGAACAACTCGAG
AGGAGCGCAAACCCCCAAGCAGCAACGGGCTCTGCGAGATGTTTATGTCG
ATTTCGTTACGTTGGGTCATGCGGAACACGTAGTTGCGCTGTACAGCTCT
TTTCCGCGCTTGGCCCAAGGCGTGGGAACGGCACGGACTCTGACTGAGTT
ACGAAACGAAGTATGTTTCAAGGTAGACAAGTGGAAATAA
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protein sequence of Ggra5144.t1

>Ggra5144.t1 ID=Ggra5144.t1|Name=Ggra5144.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MHHNFGRDIRFMKSFAARKHFLKAVRPYTALREVDKELAGIQYLEAPQLR
ESDVDALTILVKDYIQFHRRNRYNASRILIYRPRRTGLGDRLNVLAFAFW
AASISGRLFLVDWQYPFPLTQLFQNANPHVDMFFNQPVDDPRKETFSAYP
SSTLKFLKANEQGFKEYESAIFSSVRTLVVEMHYKPNLTRQFVEKNFPPG
VLPAYINGMAATIPFFRIVFHHIFKLSKDVLDYQNQVSKRMRLRPAYSIH
SQHAHGPVEEFDESARPYIAVHARVGTGVGEVGEKGRFVDISRDMKTGAM
CLASRAVRLAHMSGQPPLPIYLATDTPSFRAVFREVVELFSHGRVEVIVG
DWEVVHINAFTLPNNSRGAQTPKQQRALRDVYVDFVTLGHAEHVVALYSS
FPRLAQGVGTARTLTELRNEVCFKVDKWK*
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mRNA from alignment at tig00000069_pilon:583660..585111-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5144.t1 ID=Ggra5144.t1|Name=Ggra5144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000069_pilon:583660..585111- (Gracilaria gracilis GNS1m male)
ATGCATCATAATTTCGGAAGAGACATTCGGTTCATGAAATCGTTCGCCGC
CCGGAAGGTAAGCTCTAACAGGCTGAGCTGTAGCCCAAAGAGCTGCACTT
CAACACACTACTATCTTCTCTTCGTCCACATAACAGTGATATTCCTCTTG
TTTGACGACACAAACAGATTCCATCCACGTACTGGCTTTACATATCCCAT
ACTCAAACCATCTCGGGAGCACTTTCTCAAGGCGGTTCGGCCATACACCG
CTTTAAGAGAGGTGGACAAGGAATTGGCGGGAATCCAGTACTTGGAAGCG
CCACAACTACGAGAAAGTGATGTTGATGCTCTAACAATCTTGGTAAAAGA
TTATATCCAGTTCCACAGGCGAAACAGGTATAATGCATCGCGAATCCTCA
TATACAGACCACGACGAACTGGTCTGGGCGATCGTCTAAATGTTTTGGCG
TTTGCTTTCTGGGCTGCCTCTATTTCTGGACGTCTATTTCTTGTTGACTG
GCAGTATCCGTTTCCACTCACGCAACTGTTTCAAAACGCAAACCCCCATG
TCGACATGTTCTTTAACCAACCGGTGGACGATCCCAGAAAGGAAACGTTT
AGCGCATATCCTTCTTCAACATTGAAATTTCTCAAGGCAAATGAGCAAGG
ATTCAAGGAATACGAATCCGCTATCTTCTCAAGTGTGAGAACTTTGGTCG
TGGAGATGCATTACAAACCGAATTTAACGAGGCAATTCGTTGAGAAGAAC
TTCCCTCCGGGAGTCCTCCCGGCCTATATTAATGGCATGGCCGCCACCAT
TCCCTTTTTCCGCATTGTGTTTCATCACATCTTCAAGCTGAGCAAGGATG
TGCTTGATTATCAAAATCAAGTGAGTAAGCGAATGAGACTTCGGCCGGCG
TACTCCATTCATTCTCAGCATGCTCACGGTCCTGTCGAAGAGTTTGATGA
AAGTGCCAGACCGTATATTGCAGTACACGCAAGGGTGGGTACGGGAGTAG
GAGAAGTCGGAGAGAAAGGTAGATTTGTGGACATTAGTCGGGACATGAAG
ACAGGGGCCATGTGCTTGGCTTCCAGGGCAGTCAGATTGGCGCACATGTC
TGGACAACCACCGCTTCCGATCTACTTGGCGACTGATACACCATCATTTC
GGGCCGTGTTCCGTGAAGTAGTGGAGCTTTTTAGCCACGGACGGGTTGAA
GTCATTGTTGGAGATTGGGAGGTGGTACACATAAATGCGTTTACGCTTCC
GAACAACTCGAGAGGAGCGCAAACCCCCAAGCAGCAACGGGCTCTGCGAG
ATGTTTATGTCGATTTCGTTACGTTGGGTCATGCGGAACACGTAGTTGCG
CTGTACAGCTCTTTTCCGCGCTTGGCCCAAGGCGTGGGAACGGCACGGAC
TCTGACTGAGTTACGAAACGAAGTATGTTTCAAGGTAGACAAGTGGAAAT
AA
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Coding sequence (CDS) from alignment at tig00000069_pilon:583660..585111-

>Ggra5144.t1 ID=Ggra5144.t1|Name=Ggra5144.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000069_pilon:583660..585111- (Gracilaria gracilis GNS1m male)
ATGCATCATAATTTCGGAAGAGACATTCGGTTCATGAAATCGTTCGCCGC
CCGGAAGCACTTTCTCAAGGCGGTTCGGCCATACACCGCTTTAAGAGAGG
TGGACAAGGAATTGGCGGGAATCCAGTACTTGGAAGCGCCACAACTACGA
GAAAGTGATGTTGATGCTCTAACAATCTTGGTAAAAGATTATATCCAGTT
CCACAGGCGAAACAGGTATAATGCATCGCGAATCCTCATATACAGACCAC
GACGAACTGGTCTGGGCGATCGTCTAAATGTTTTGGCGTTTGCTTTCTGG
GCTGCCTCTATTTCTGGACGTCTATTTCTTGTTGACTGGCAGTATCCGTT
TCCACTCACGCAACTGTTTCAAAACGCAAACCCCCATGTCGACATGTTCT
TTAACCAACCGGTGGACGATCCCAGAAAGGAAACGTTTAGCGCATATCCT
TCTTCAACATTGAAATTTCTCAAGGCAAATGAGCAAGGATTCAAGGAATA
CGAATCCGCTATCTTCTCAAGTGTGAGAACTTTGGTCGTGGAGATGCATT
ACAAACCGAATTTAACGAGGCAATTCGTTGAGAAGAACTTCCCTCCGGGA
GTCCTCCCGGCCTATATTAATGGCATGGCCGCCACCATTCCCTTTTTCCG
CATTGTGTTTCATCACATCTTCAAGCTGAGCAAGGATGTGCTTGATTATC
AAAATCAAGTGAGTAAGCGAATGAGACTTCGGCCGGCGTACTCCATTCAT
TCTCAGCATGCTCACGGTCCTGTCGAAGAGTTTGATGAAAGTGCCAGACC
GTATATTGCAGTACACGCAAGGGTGGGTACGGGAGTAGGAGAAGTCGGAG
AGAAAGGTAGATTTGTGGACATTAGTCGGGACATGAAGACAGGGGCCATG
TGCTTGGCTTCCAGGGCAGTCAGATTGGCGCACATGTCTGGACAACCACC
GCTTCCGATCTACTTGGCGACTGATACACCATCATTTCGGGCCGTGTTCC
GTGAAGTAGTGGAGCTTTTTAGCCACGGACGGGTTGAAGTCATTGTTGGA
GATTGGGAGGTGGTACACATAAATGCGTTTACGCTTCCGAACAACTCGAG
AGGAGCGCAAACCCCCAAGCAGCAACGGGCTCTGCGAGATGTTTATGTCG
ATTTCGTTACGTTGGGTCATGCGGAACACGTAGTTGCGCTGTACAGCTCT
TTTCCGCGCTTGGCCCAAGGCGTGGGAACGGCACGGACTCTGACTGAGTT
ACGAAACGAAGTATGTTTCAAGGTAGACAAGTGGAAATAA
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