Ggra5141.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5141.t1
Unique NameGgra5141.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:579018..579371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5141Ggra5141Gracilaria gracilis GNS1m malegenetig00000069_pilon 579018..579371 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5141.t1.start1Ggra5141.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 579018..579020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5141.t1.CDS1Ggra5141.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 579018..579371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5141.t1.exon1Ggra5141.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 579018..579371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5141.t1.stop1Ggra5141.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 579369..579371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5141.t1Ggra5141.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 579018..579371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5141.t1 ID=Ggra5141.t1|Name=Ggra5141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MDTASAEAKPILGHVFDGDRDEHTEEGIEIDEDLVPGSSVVKDVGGCATQ
NAEDLISGNNETKGGMVDEVGEEVDEEVEVEKSVCKDIDGCADRKTDDQP
WDKNETKDEVWTRWMKR*
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spliced messenger RNA

>Ggra5141.t1 ID=Ggra5141.t1|Name=Ggra5141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000069_pilon:579018..579371+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCGCTAGTGCGGAAGCTAAGCCCATACTGGGACATGTTTTTGA
TGGTGATCGGGATGAACATACGGAGGAGGGCATCGAGATCGATGAAGATC
TTGTTCCCGGCAGTTCTGTTGTAAAAGATGTTGGTGGCTGCGCCACTCAG
AATGCAGAGGATCTAATTTCGGGTAATAATGAAACGAAGGGGGGAATGGT
ggacgaggtaggtgaagaggtagatgaagaggtagaAGTGGAGAAATCTG
TGTGCAAAGATATTGATGGTTGTGCCGATCGAAAAACAGATGATCAACCT
TGGGACAAGAATGAAACGAAGGATGAAGTGTGGACGAGATGGATGAAGAG
GTAG
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protein sequence of Ggra5141.t1

>Ggra5141.t1 ID=Ggra5141.t1|Name=Ggra5141.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MDTASAEAKPILGHVFDGDRDEHTEEGIEIDEDLVPGSSVVKDVGGCATQ
NAEDLISGNNETKGGMVDEVGEEVDEEVEVEKSVCKDIDGCADRKTDDQP
WDKNETKDEVWTRWMKR*
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mRNA from alignment at tig00000069_pilon:579018..579371+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5141.t1 ID=Ggra5141.t1|Name=Ggra5141.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000069_pilon:579018..579371+ (Gracilaria gracilis GNS1m male)
ATGGATACCGCTAGTGCGGAAGCTAAGCCCATACTGGGACATGTTTTTGA
TGGTGATCGGGATGAACATACGGAGGAGGGCATCGAGATCGATGAAGATC
TTGTTCCCGGCAGTTCTGTTGTAAAAGATGTTGGTGGCTGCGCCACTCAG
AATGCAGAGGATCTAATTTCGGGTAATAATGAAACGAAGGGGGGAATGGT
ggacgaggtaggtgaagaggtagatgaagaggtagaAGTGGAGAAATCTG
TGTGCAAAGATATTGATGGTTGTGCCGATCGAAAAACAGATGATCAACCT
TGGGACAAGAATGAAACGAAGGATGAAGTGTGGACGAGATGGATGAAGAG
GTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:579018..579371+

>Ggra5141.t1 ID=Ggra5141.t1|Name=Ggra5141.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000069_pilon:579018..579371+ (Gracilaria gracilis GNS1m male)
ATGGATACCGCTAGTGCGGAAGCTAAGCCCATACTGGGACATGTTTTTGA
TGGTGATCGGGATGAACATACGGAGGAGGGCATCGAGATCGATGAAGATC
TTGTTCCCGGCAGTTCTGTTGTAAAAGATGTTGGTGGCTGCGCCACTCAG
AATGCAGAGGATCTAATTTCGGGTAATAATGAAACGAAGGGGGGAATGGT
ggacgaggtaggtgaagaggtagatgaagaggtagaAGTGGAGAAATCTG
TGTGCAAAGATATTGATGGTTGTGCCGATCGAAAAACAGATGATCAACCT
TGGGACAAGAATGAAACGAAGGATGAAGTGTGGACGAGATGGATGAAGAG
GTAG
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