Ggra5137.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5137.t1
Unique NameGgra5137.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:566965..568272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708033.1
PFAMsDUF4749,Metallophos
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00425
KEGG koko:K01128,ko:K12350
KEGG ReactionR02541
KEGG Pathwayko00600,ko01100,ko04071,ko04142,ko04217,map00600,map01100,map04071,map04142,map04217
GOsGO:0003674,GO:0003824,GO:0004620,GO:0004767,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006685,GO:0006793,GO:0006796,GO:0006807,GO:0007498,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009888,GO:0009987,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0030148,GO:0030149,GO:0032502,GO:0034641,GO:0042578,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0046434,GO:0046466,GO:0046467,GO:0046513,GO:0048856,GO:0071704,GO:0097164,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576
Evalue1.05e-26
EggNOG OGsKOG3770@1|root,KOG3770@2759|Eukaryota
EC3.1.4.12
Descriptionsphingomyelin catabolic process
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5137Ggra5137Gracilaria gracilis GNS1m malegenetig00000069_pilon 566965..568272 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5137.t1.start1Ggra5137.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 566965..566967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5137.t1.CDS1Ggra5137.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 566965..568272 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5137.t1.exon1Ggra5137.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 566965..568272 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5137.t1.stop1Ggra5137.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 568270..568272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5137.t1Ggra5137.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 566965..568272 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5137.t1 ID=Ggra5137.t1|Name=Ggra5137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=436bp
MESAHLSIAASPSVGARRFLVVVAMRRFSARLDRATTAPRVTRSAFFVAP
LFAPASGTPLSASRSSSFCAIIPDQLRLSRRAIRNAPHLPASKRISVPLR
RVQLTKSVSQPPSTLPVRLLNTTVHVPGRLILMCVPAIWASYAVCIKVLY
LLPWALSPPLFNLLRLAVGTLLGLPSLVAHFRNAREQKSSSFRAALLAGV
ELGAWTIIVNVMQMHALRHTTASRGAFLNQMSTIIVPIAACLFGMEKRIN
PSVIFASIVSIFGVALLTLDNVSTSFSLLGDGVMLLTAFVSAMYIIRTKI
HTKLANKGPLVSAKVLGQTTFAALYFAAVAMFSRSAFPSFATMFAGATPL
LLMVNMILVLWAGVFICFLSTHLQVEGQKLVSASETVIIFTSMPLWASVW
AWPLGERFGPRGIVGASLILGATAIAAASARKREA*
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spliced messenger RNA

>Ggra5137.t1 ID=Ggra5137.t1|Name=Ggra5137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000069_pilon:566965..568272+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGTGCTCATCTATCCATCGCCGCATCGCCAAGCGTAGGAGCGCG
ACGTTTCCTGGTCGTCGTCGCCATGAGGCGCTTCTCTGCTCGGCTCGACC
GCGCGACGACCGCGCCCCGTGTCACACGCTCTGCCTTCTTCGTCGCGCCT
TTGTTTGCACCGGCGAGTGGTACGCCGCTTTCTGCGTCTCGATCATCGTC
GTTCTGTGCAATAATCCCAGACCAGCTCCGACTATCGCGCCGCGCCATAC
GCAATGCTCCTCACCTTCCCGCGTCGAAGCGCATTTCGGTCCCGTTGCGG
CGCGTACAGCTAACAAAGTCTGTCTCGCAGCCGCCAAGCACCCTTCCGGT
CAGGTTGCTGAACACCACGGTGCATGTACCTGGCCGTCTCATTCTAATGT
GCGTCCCGGCCATATGGGCATCGTACGCAGTCTGTATCAAGGTGCTTTAC
CTTTTACCGTGGGCGCTTTCGCCGCCGCTGTTCAATCTGCTCCGTTTAGC
AGTCGGTACTTTGCTCGGCTTGCCCTCACTAGTAGCCCACTTTCGAAACG
CGCGCGAGCAAAAGTCATCATCGTTTCGTGCCGCACTTCTGGCTGGCGTT
GAACTGGGCGCATGGACCATTATCGTAAACGTCATGCAGATGCATGCCCT
GCGCCATACAACCGCATCCCGAGGTGCTTTCCTCAATCAAATGTCAACTA
TCATTGTTCCAATTGCTGCGTGTCTTTTTGGCATGGAGAAACGTATCAAT
CCAAGTGTTATATTCGCCAGCATTGTGTCTATCTTCGGGGTTGCGCTGCT
CACGTTGGATAATGTGTCCACGTCCTTCTCACTTCTGGGAGATGGTGTCA
TGTTGCTCACCGCTTTTGTCAGCGCCATGTACATCATACGCACAAAAATA
CACACCAAACTCGCCAACAAAGGGCCGTTGGTTTCGGCAAAAGTATTGGG
TCAAACTACGTTCGCAGCGCTTTATTTCGCGGCCGTTGCAATGTTTTCCC
GTTCTGCTTTCCCGAGTTTTGCAACCATGTTTGCAGGCGCTACGCCGCTG
TTGCTTATGGTGAATATGATATTGGTGCTTTGGGCTGGCGTTTTCATTTG
TTTCTTAAGTACTCACCTGCAGGTTGAGGGACAGAAGCTGGTGTCTGCAA
GTGAGACGGTGATCATTTTCACCAGCATGCCGCTGTGGGCGTCTGTTTGG
GCATGGCCTCTGGGAGAGCGTTTCGGTCCCCGCGGTATTGTTGGCGCCAG
TTTGATTTTGGGCGCTACGGCGATTGCAGCTGCTTCCGCAAGGAAGCGGG
AGGCATAG
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protein sequence of Ggra5137.t1

>Ggra5137.t1 ID=Ggra5137.t1|Name=Ggra5137.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=436bp
MESAHLSIAASPSVGARRFLVVVAMRRFSARLDRATTAPRVTRSAFFVAP
LFAPASGTPLSASRSSSFCAIIPDQLRLSRRAIRNAPHLPASKRISVPLR
RVQLTKSVSQPPSTLPVRLLNTTVHVPGRLILMCVPAIWASYAVCIKVLY
LLPWALSPPLFNLLRLAVGTLLGLPSLVAHFRNAREQKSSSFRAALLAGV
ELGAWTIIVNVMQMHALRHTTASRGAFLNQMSTIIVPIAACLFGMEKRIN
PSVIFASIVSIFGVALLTLDNVSTSFSLLGDGVMLLTAFVSAMYIIRTKI
HTKLANKGPLVSAKVLGQTTFAALYFAAVAMFSRSAFPSFATMFAGATPL
LLMVNMILVLWAGVFICFLSTHLQVEGQKLVSASETVIIFTSMPLWASVW
AWPLGERFGPRGIVGASLILGATAIAAASARKREA*
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mRNA from alignment at tig00000069_pilon:566965..568272+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5137.t1 ID=Ggra5137.t1|Name=Ggra5137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000069_pilon:566965..568272+ (Gracilaria gracilis GNS1m male)
ATGGAAAGTGCTCATCTATCCATCGCCGCATCGCCAAGCGTAGGAGCGCG
ACGTTTCCTGGTCGTCGTCGCCATGAGGCGCTTCTCTGCTCGGCTCGACC
GCGCGACGACCGCGCCCCGTGTCACACGCTCTGCCTTCTTCGTCGCGCCT
TTGTTTGCACCGGCGAGTGGTACGCCGCTTTCTGCGTCTCGATCATCGTC
GTTCTGTGCAATAATCCCAGACCAGCTCCGACTATCGCGCCGCGCCATAC
GCAATGCTCCTCACCTTCCCGCGTCGAAGCGCATTTCGGTCCCGTTGCGG
CGCGTACAGCTAACAAAGTCTGTCTCGCAGCCGCCAAGCACCCTTCCGGT
CAGGTTGCTGAACACCACGGTGCATGTACCTGGCCGTCTCATTCTAATGT
GCGTCCCGGCCATATGGGCATCGTACGCAGTCTGTATCAAGGTGCTTTAC
CTTTTACCGTGGGCGCTTTCGCCGCCGCTGTTCAATCTGCTCCGTTTAGC
AGTCGGTACTTTGCTCGGCTTGCCCTCACTAGTAGCCCACTTTCGAAACG
CGCGCGAGCAAAAGTCATCATCGTTTCGTGCCGCACTTCTGGCTGGCGTT
GAACTGGGCGCATGGACCATTATCGTAAACGTCATGCAGATGCATGCCCT
GCGCCATACAACCGCATCCCGAGGTGCTTTCCTCAATCAAATGTCAACTA
TCATTGTTCCAATTGCTGCGTGTCTTTTTGGCATGGAGAAACGTATCAAT
CCAAGTGTTATATTCGCCAGCATTGTGTCTATCTTCGGGGTTGCGCTGCT
CACGTTGGATAATGTGTCCACGTCCTTCTCACTTCTGGGAGATGGTGTCA
TGTTGCTCACCGCTTTTGTCAGCGCCATGTACATCATACGCACAAAAATA
CACACCAAACTCGCCAACAAAGGGCCGTTGGTTTCGGCAAAAGTATTGGG
TCAAACTACGTTCGCAGCGCTTTATTTCGCGGCCGTTGCAATGTTTTCCC
GTTCTGCTTTCCCGAGTTTTGCAACCATGTTTGCAGGCGCTACGCCGCTG
TTGCTTATGGTGAATATGATATTGGTGCTTTGGGCTGGCGTTTTCATTTG
TTTCTTAAGTACTCACCTGCAGGTTGAGGGACAGAAGCTGGTGTCTGCAA
GTGAGACGGTGATCATTTTCACCAGCATGCCGCTGTGGGCGTCTGTTTGG
GCATGGCCTCTGGGAGAGCGTTTCGGTCCCCGCGGTATTGTTGGCGCCAG
TTTGATTTTGGGCGCTACGGCGATTGCAGCTGCTTCCGCAAGGAAGCGGG
AGGCATAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:566965..568272+

>Ggra5137.t1 ID=Ggra5137.t1|Name=Ggra5137.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00000069_pilon:566965..568272+ (Gracilaria gracilis GNS1m male)
ATGGAAAGTGCTCATCTATCCATCGCCGCATCGCCAAGCGTAGGAGCGCG
ACGTTTCCTGGTCGTCGTCGCCATGAGGCGCTTCTCTGCTCGGCTCGACC
GCGCGACGACCGCGCCCCGTGTCACACGCTCTGCCTTCTTCGTCGCGCCT
TTGTTTGCACCGGCGAGTGGTACGCCGCTTTCTGCGTCTCGATCATCGTC
GTTCTGTGCAATAATCCCAGACCAGCTCCGACTATCGCGCCGCGCCATAC
GCAATGCTCCTCACCTTCCCGCGTCGAAGCGCATTTCGGTCCCGTTGCGG
CGCGTACAGCTAACAAAGTCTGTCTCGCAGCCGCCAAGCACCCTTCCGGT
CAGGTTGCTGAACACCACGGTGCATGTACCTGGCCGTCTCATTCTAATGT
GCGTCCCGGCCATATGGGCATCGTACGCAGTCTGTATCAAGGTGCTTTAC
CTTTTACCGTGGGCGCTTTCGCCGCCGCTGTTCAATCTGCTCCGTTTAGC
AGTCGGTACTTTGCTCGGCTTGCCCTCACTAGTAGCCCACTTTCGAAACG
CGCGCGAGCAAAAGTCATCATCGTTTCGTGCCGCACTTCTGGCTGGCGTT
GAACTGGGCGCATGGACCATTATCGTAAACGTCATGCAGATGCATGCCCT
GCGCCATACAACCGCATCCCGAGGTGCTTTCCTCAATCAAATGTCAACTA
TCATTGTTCCAATTGCTGCGTGTCTTTTTGGCATGGAGAAACGTATCAAT
CCAAGTGTTATATTCGCCAGCATTGTGTCTATCTTCGGGGTTGCGCTGCT
CACGTTGGATAATGTGTCCACGTCCTTCTCACTTCTGGGAGATGGTGTCA
TGTTGCTCACCGCTTTTGTCAGCGCCATGTACATCATACGCACAAAAATA
CACACCAAACTCGCCAACAAAGGGCCGTTGGTTTCGGCAAAAGTATTGGG
TCAAACTACGTTCGCAGCGCTTTATTTCGCGGCCGTTGCAATGTTTTCCC
GTTCTGCTTTCCCGAGTTTTGCAACCATGTTTGCAGGCGCTACGCCGCTG
TTGCTTATGGTGAATATGATATTGGTGCTTTGGGCTGGCGTTTTCATTTG
TTTCTTAAGTACTCACCTGCAGGTTGAGGGACAGAAGCTGGTGTCTGCAA
GTGAGACGGTGATCATTTTCACCAGCATGCCGCTGTGGGCGTCTGTTTGG
GCATGGCCTCTGGGAGAGCGTTTCGGTCCCCGCGGTATTGTTGGCGCCAG
TTTGATTTTGGGCGCTACGGCGATTGCAGCTGCTTCCGCAAGGAAGCGGG
AGGCATAG
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