Ggra5131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5131.t1
Unique NameGgra5131.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:554623..555160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4952.CAG80365
Preferred nameCMD1
PFAMsEF-hand_1,EF-hand_5,EF-hand_8
Max annot lvl4751|Fungi
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0000003,GO:0000131,GO:0000226,GO:0000741,GO:0000742,GO:0000746,GO:0000747,GO:0001411,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005823,GO:0005856,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006606,GO:0006607,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0006913,GO:0006914,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007033,GO:0007049,GO:0007114,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009847,GO:0009987,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016192,GO:0016237,GO:0017038,GO:0019637,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0019954,GO:0022402,GO:0022414,GO:0030427,GO:0031023,GO:0032502,GO:0032505,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042144,GO:0042886,GO:0042995,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043332,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0045017,GO:0045184,GO:0046474,GO:0046486,GO:0046488,GO:0046872,GO:0046907,GO:0048284,GO:0048306,GO:0050789,GO:0050794,GO:0051019,GO:0051128,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051286,GO:0051300,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0090407,GO:0097576,GO:0098657,GO:0120025,GO:0120038,GO:1901576,GO:1903525,GO:1903729
Evalue5e-18
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,38ETU@33154|Opisthokonta,3NVWG@4751|Fungi,3QN85@4890|Ascomycota,3RUMP@4891|Saccharomycetes
Descriptionto Saccharomyces cerevisiae CMD1 (YBR109C)
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5131Ggra5131Gracilaria gracilis GNS1m malegenetig00000069_pilon 554623..555160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5131.t1Ggra5131.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 554623..555160 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5131.t1.stop1Ggra5131.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 554623..554625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5131.t1.CDS1Ggra5131.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 554623..554990 -
Ggra5131.t1.CDS2Ggra5131.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 555073..555160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5131.t1.exon1Ggra5131.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 554623..554990 -
Ggra5131.t1.exon2Ggra5131.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 555073..555160 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5131.t1.intron1Ggra5131.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 554991..555072 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5131.t1.start1Ggra5131.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 555158..555160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5131.t1 ID=Ggra5131.t1|Name=Ggra5131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MNSSSSAPNLESDDESLRAVFDVFDPSGKGSVPVDRIGTIIRSAGEFPTE
ATVNELRNRYSISNDAITYEQFVCAIREVRRKHKKPSASEVEAALRIFDS
SPYVSVADLKKTLTQFGEKLSEEEVDRLVSLVETTEDGRIDKKEMAMLLT
S*
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spliced messenger RNA

>Ggra5131.t1 ID=Ggra5131.t1|Name=Ggra5131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000069_pilon:554623..555160- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGTTCGTCATCCGCTCCCAACCTTGAGTCCGATGATGAGAGCCT
TCGAGCAGTCTTCGACGTATTTGATCCGTCTGGTAAAGGTTCTGTCCCGG
TTGATCGAATTGGCACCATCATCCGTTCTGCTGGCGAGTTTCCAACTGAG
GCCACCGTGAATGAATTGAGAAACAGATACAGCATAAGCAACGATGCTAT
CACTTATGAACAATTCGTTTGCGCTATCAGGGAGGTACGGCGGAAGCACA
AGAAGCCTTCTGCTTCCGAAGTGGAAGCAGCACTTCGCATTTTTGACTCG
TCGCCGTATGTTAGCGTTGCAGACTTGAAGAAGACTTTGACGCAATTCGG
GGAGAAACTCTCTGAAGAAGAAGTTGATCGACTAGTGAGTCTTGTGGAAA
CAACAGAAGACGGGCGTATTGACAAAAAGGAAATGGCCATGCTGTTGACA
TCGTAA
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protein sequence of Ggra5131.t1

>Ggra5131.t1 ID=Ggra5131.t1|Name=Ggra5131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MNSSSSAPNLESDDESLRAVFDVFDPSGKGSVPVDRIGTIIRSAGEFPTE
ATVNELRNRYSISNDAITYEQFVCAIREVRRKHKKPSASEVEAALRIFDS
SPYVSVADLKKTLTQFGEKLSEEEVDRLVSLVETTEDGRIDKKEMAMLLT
S*
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mRNA from alignment at tig00000069_pilon:554623..555160-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5131.t1 ID=Ggra5131.t1|Name=Ggra5131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=538bp|location=Sequence derived from alignment at tig00000069_pilon:554623..555160- (Gracilaria gracilis GNS1m male)
ATGAACAGTTCGTCATCCGCTCCCAACCTTGAGTCCGATGATGAGAGCCT
TCGAGCAGTCTTCGACGTATTTGATCCGTCTGGTAAAGGTTTGTTACTAC
AGCAGAACGTACTACAAATGCAATGAAGAGCACTGACATCGATTCTGTTC
TTGAAACATGATGAATGTAGGTTCTGTCCCGGTTGATCGAATTGGCACCA
TCATCCGTTCTGCTGGCGAGTTTCCAACTGAGGCCACCGTGAATGAATTG
AGAAACAGATACAGCATAAGCAACGATGCTATCACTTATGAACAATTCGT
TTGCGCTATCAGGGAGGTACGGCGGAAGCACAAGAAGCCTTCTGCTTCCG
AAGTGGAAGCAGCACTTCGCATTTTTGACTCGTCGCCGTATGTTAGCGTT
GCAGACTTGAAGAAGACTTTGACGCAATTCGGGGAGAAACTCTCTGAAGA
AGAAGTTGATCGACTAGTGAGTCTTGTGGAAACAACAGAAGACGGGCGTA
TTGACAAAAAGGAAATGGCCATGCTGTTGACATCGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:554623..555160-

>Ggra5131.t1 ID=Ggra5131.t1|Name=Ggra5131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000069_pilon:554623..555160- (Gracilaria gracilis GNS1m male)
ATGAACAGTTCGTCATCCGCTCCCAACCTTGAGTCCGATGATGAGAGCCT
TCGAGCAGTCTTCGACGTATTTGATCCGTCTGGTAAAGGTTCTGTCCCGG
TTGATCGAATTGGCACCATCATCCGTTCTGCTGGCGAGTTTCCAACTGAG
GCCACCGTGAATGAATTGAGAAACAGATACAGCATAAGCAACGATGCTAT
CACTTATGAACAATTCGTTTGCGCTATCAGGGAGGTACGGCGGAAGCACA
AGAAGCCTTCTGCTTCCGAAGTGGAAGCAGCACTTCGCATTTTTGACTCG
TCGCCGTATGTTAGCGTTGCAGACTTGAAGAAGACTTTGACGCAATTCGG
GGAGAAACTCTCTGAAGAAGAAGTTGATCGACTAGTGAGTCTTGTGGAAA
CAACAGAAGACGGGCGTATTGACAAAAAGGAAATGGCCATGCTGTTGACA
TCGTAA
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