Ggra5124.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5124.t1
Unique NameGgra5124.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:528687..529669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391587.KAOT1_21632
Preferred namequeE
PFAMsFer4_12,Fer4_14,Radical_SAM
Max annot lvl2|Bacteria
KEGG rclassRC02989
KEGG koko:K04068,ko:K10026
KEGG ReactionR04710,R10002
KEGG Pathwayko00790,ko01100,map00790,map01100
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047
Evalue1.22e-57
EggNOG OGsCOG0602@1|root,COG0602@2|Bacteria
EC1.97.1.4,4.3.99.3
Descriptionqueuosine metabolic process
COG categoryH
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5124Ggra5124Gracilaria gracilis GNS1m malegenetig00000069_pilon 528687..529669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5124.t1Ggra5124.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 528687..529669 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5124.t1.start1Ggra5124.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 528687..528689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5124.t1.CDS1Ggra5124.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 528687..529439 +
Ggra5124.t1.CDS2Ggra5124.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 529553..529669 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5124.t1.exon1Ggra5124.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 528687..529439 +
Ggra5124.t1.exon2Ggra5124.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 529553..529669 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5124.t1.intron1Ggra5124.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 529440..529552 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5124.t1.stop1Ggra5124.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 529667..529669 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5124.t1 ID=Ggra5124.t1|Name=Ggra5124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MSFFQRSKATSFRTIIRYICDNAKRNSSKQTKERSITPSFLVSEIFRSVQ
GEGPNSGKPSVFLRLGVCNLSCIWCDTPYTWLYSDSKLAEIERRASEVGA
ISPLNKVYSKRDELRKLSVSDTIGEVNKLARDGAKNLVITGGEPLLHKEP
LLHLLPCFIQQGFDIEFETNGTISPNGLPHTVHLNVSPKLSNSLMRKEQR
LNFKVLQECMQFPSSVLKFVVHGAADLQEVQYIIKELGTDPSRVYLMPQG
TDSDTIRKRGRWLVDACLEYGFRYTHRIHVELWGDKRGV*
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spliced messenger RNA

>Ggra5124.t1 ID=Ggra5124.t1|Name=Ggra5124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000069_pilon:528687..529669+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTCTTTCAACGCTCTAAAGCAACGAGCTTCCGCACTATAATTCG
ATACATTTGTGACAATGCGAAGAGAAATTCATCCAAACAGACCAAGGAGA
GATCGATCACACCATCGTTCTTGGTATCAGAAATATTCCGGTCCGTGCAA
GGTGAAGGTCCCAACTCCGGAAAGCCTTCTGTTTTCCTCCGTCTCGGTGT
ATGCAATCTCAGCTGCATCTGGTGTGACACTCCTTATACCTGGTTGTACT
CTGATTCTAAGCTTGCCGAAATAGAAAGGAGGGCAAGTGAAGTAGGAGCC
ATCTCGCCATTAAACAAGGTTTACTCGAAGCGTGACGAACTGCGAAAACT
ATCTGTGTCTGATACCATTGGCGAAGTTAATAAATTAGCTCGTGATGGGG
CGAAGAATCTGGTTATTACCGGAGGTGAGCCATTATTACACAAGGAACCC
CTTTTGCATTTGCTACCGTGCTTTATTCAACAAGGTTTTGATATTGAGTT
TGAAACAAATGGAACAATAAGCCCGAATGGACTTCCTCACACAGTGCACT
TGAATGTTAGTCCTAAGCTATCGAACTCCTTGATGCGAAAAGAACAGAGA
TTGAACTTCAAAGTGCTTCAGGAATGTATGCAATTTCCGTCTTCTGTTCT
CAAGTTTGTCGTGCATGGAGCGGCAGACCTACAGGAGGTTCAATACATCA
TCAAGGAGCTTGGCACGGACCCAAGCCGTGTATATCTCATGCCACAAGGA
ACGGATTCAGACACGATTCGAAAACGAGGGAGATGGCTCGTTGACGCTTG
CTTAGAATACGGATTTCGGTACACTCATCGGATACATGTTGAACTTTGGG
GAGATAAGAGAGGTGTGTGA
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protein sequence of Ggra5124.t1

>Ggra5124.t1 ID=Ggra5124.t1|Name=Ggra5124.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MSFFQRSKATSFRTIIRYICDNAKRNSSKQTKERSITPSFLVSEIFRSVQ
GEGPNSGKPSVFLRLGVCNLSCIWCDTPYTWLYSDSKLAEIERRASEVGA
ISPLNKVYSKRDELRKLSVSDTIGEVNKLARDGAKNLVITGGEPLLHKEP
LLHLLPCFIQQGFDIEFETNGTISPNGLPHTVHLNVSPKLSNSLMRKEQR
LNFKVLQECMQFPSSVLKFVVHGAADLQEVQYIIKELGTDPSRVYLMPQG
TDSDTIRKRGRWLVDACLEYGFRYTHRIHVELWGDKRGV*
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mRNA from alignment at tig00000069_pilon:528687..529669+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5124.t1 ID=Ggra5124.t1|Name=Ggra5124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=983bp|location=Sequence derived from alignment at tig00000069_pilon:528687..529669+ (Gracilaria gracilis GNS1m male)
ATGAGTTTCTTTCAACGCTCTAAAGCAACGAGCTTCCGCACTATAATTCG
ATACATTTGTGACAATGCGAAGAGAAATTCATCCAAACAGACCAAGGAGA
GATCGATCACACCATCGTTCTTGGTATCAGAAATATTCCGGTCCGTGCAA
GGTGAAGGTCCCAACTCCGGAAAGCCTTCTGTTTTCCTCCGTCTCGGTGT
ATGCAATCTCAGCTGCATCTGGTGTGACACTCCTTATACCTGGTTGTACT
CTGATTCTAAGCTTGCCGAAATAGAAAGGAGGGCAAGTGAAGTAGGAGCC
ATCTCGCCATTAAACAAGGTTTACTCGAAGCGTGACGAACTGCGAAAACT
ATCTGTGTCTGATACCATTGGCGAAGTTAATAAATTAGCTCGTGATGGGG
CGAAGAATCTGGTTATTACCGGAGGTGAGCCATTATTACACAAGGAACCC
CTTTTGCATTTGCTACCGTGCTTTATTCAACAAGGTTTTGATATTGAGTT
TGAAACAAATGGAACAATAAGCCCGAATGGACTTCCTCACACAGTGCACT
TGAATGTTAGTCCTAAGCTATCGAACTCCTTGATGCGAAAAGAACAGAGA
TTGAACTTCAAAGTGCTTCAGGAATGTATGCAATTTCCGTCTTCTGTTCT
CAAGTTTGTCGTGCATGGAGCGGCAGACCTACAGGAGGTTCAATACATCA
TCAAGGAGCTTGGCACGGACCCAAGCCGTGTATATCTCATGCCACAAGGA
ACGGTATGTATCATTCCATCTGTTTTTGGTAGCAAAGTTACTTTCCTCAT
GTCCCTAACCACTCAACGCTTCTTTACGCTCTCACTCCCATTCATTTCAC
CATATACACGACACAGGATTCAGACACGATTCGAAAACGAGGGAGATGGC
TCGTTGACGCTTGCTTAGAATACGGATTTCGGTACACTCATCGGATACAT
GTTGAACTTTGGGGAGATAAGAGAGGTGTGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:528687..529669+

>Ggra5124.t1 ID=Ggra5124.t1|Name=Ggra5124.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000069_pilon:528687..529669+ (Gracilaria gracilis GNS1m male)
ATGAGTTTCTTTCAACGCTCTAAAGCAACGAGCTTCCGCACTATAATTCG
ATACATTTGTGACAATGCGAAGAGAAATTCATCCAAACAGACCAAGGAGA
GATCGATCACACCATCGTTCTTGGTATCAGAAATATTCCGGTCCGTGCAA
GGTGAAGGTCCCAACTCCGGAAAGCCTTCTGTTTTCCTCCGTCTCGGTGT
ATGCAATCTCAGCTGCATCTGGTGTGACACTCCTTATACCTGGTTGTACT
CTGATTCTAAGCTTGCCGAAATAGAAAGGAGGGCAAGTGAAGTAGGAGCC
ATCTCGCCATTAAACAAGGTTTACTCGAAGCGTGACGAACTGCGAAAACT
ATCTGTGTCTGATACCATTGGCGAAGTTAATAAATTAGCTCGTGATGGGG
CGAAGAATCTGGTTATTACCGGAGGTGAGCCATTATTACACAAGGAACCC
CTTTTGCATTTGCTACCGTGCTTTATTCAACAAGGTTTTGATATTGAGTT
TGAAACAAATGGAACAATAAGCCCGAATGGACTTCCTCACACAGTGCACT
TGAATGTTAGTCCTAAGCTATCGAACTCCTTGATGCGAAAAGAACAGAGA
TTGAACTTCAAAGTGCTTCAGGAATGTATGCAATTTCCGTCTTCTGTTCT
CAAGTTTGTCGTGCATGGAGCGGCAGACCTACAGGAGGTTCAATACATCA
TCAAGGAGCTTGGCACGGACCCAAGCCGTGTATATCTCATGCCACAAGGA
ACGGATTCAGACACGATTCGAAAACGAGGGAGATGGCTCGTTGACGCTTG
CTTAGAATACGGATTTCGGTACACTCATCGGATACATGTTGAACTTTGGG
GAGATAAGAGAGGTGTGTGA
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