Ggra5123.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5123.t1
Unique NameGgra5123.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:527194..528141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM110CT
Preferred namePTGES2
PFAMsGST_C,GST_C_2,GST_N_3,Glutaredoxin
Max annot lvl2759|Eukaryota
KEGG rclassRC00672,RC01447,RC01728,RC01764,RC02528
KEGG koko:K01253,ko:K05309
KEGG ReactionR02265,R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443
KEGG Pathwayko00590,ko00980,ko01100,ko04976,ko05204,map00590,map00980,map01100,map04976,map05204
GOsGO:0000323,GO:0001516,GO:0001676,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006082,GO:0006355,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006690,GO:0006692,GO:0006693,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016053,GO:0016192,GO:0016829,GO:0016853,GO:0016860,GO:0019219,GO:0019222,GO:0019369,GO:0019371,GO:0019752,GO:0020037,GO:0030141,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0033218,GO:0033559,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042277,GO:0042582,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043295,GO:0043299,GO:0043312,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045893,GO:0045935,GO:0046394,GO:0046456,GO:0046457,GO:0046903,GO:0046906,GO:0048037,GO:0048518,GO:0048522,GO:0050220,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0072330,GO:0072341,GO:0080090,GO:0097159,GO:0097708,GO:0099503,GO:1900750,GO:1901363,GO:1901568,GO:1901570,GO:1901576,GO:1901681,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue2.75e-75
EggNOG OGsKOG3029@1|root,KOG3029@2759|Eukaryota
EC3.3.2.9,5.3.99.3
Descriptionprostaglandin-E synthase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5123Ggra5123Gracilaria gracilis GNS1m malegenetig00000069_pilon 527194..528141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5123.t1.stop1Ggra5123.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 527194..527196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5123.t1.CDS1Ggra5123.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 527194..528141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5123.t1.exon1Ggra5123.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 527194..528141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5123.t1.start1Ggra5123.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 528139..528141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5123.t1Ggra5123.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 527194..528141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5123.t1 ID=Ggra5123.t1|Name=Ggra5123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MALTLRSAGSLSRRLLSTRNTQILCRTITSIPLSQKGIKSSTTRLFACAS
SAATVFVLASTPQVFAEFSTIAAAKAQSTLPDITLYQYEVCPFCNKVRAY
LDYHNIPYRVVEVDPLRKTELKGFPEDYRKVPIAIVNGEQINGSDKVIDC
VHQLTKGRETPVSPDEKKWLKWLDDYFIHLIAPNIYRTPTESLQTFEYIA
DNSKFSAWQRSTIRYTGAAAMYFVGRKIKKKYDIEDEREAIHNALRDWTD
AITKAGTPFLAGPEPGVADLSIFGVLKAIRTFNTFSEVREKNPALADWFD
RTSQAVGEPCVTDRQ*
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spliced messenger RNA

>Ggra5123.t1 ID=Ggra5123.t1|Name=Ggra5123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000069_pilon:527194..528141- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTCACTCTTCGCTCAGCTGGATCTTTAAGTCGGCGATTATTGTC
TACAAGAAACACCCAGATCCTTTGTCGCACTATAACTAGCATACCATTAT
CACAAAAGGGGATCAAATCGTCTACAACGCGTCTCTTTGCCTGTGCTTCG
TCAGCTGCTACAGTGTTTGTTCTTGCAAGCACTCCCCAGGTATTCGCTGA
ATTTTCAACTATAGCAGCTGCGAAAGCTCAATCGACCCTCCCAGACATTA
CATTATACCAATACGAGGTTTGTCCGTTCTGCAACAAAGTACGCGCTTAT
CTTGACTATCATAACATTCCGTACAGAGTGGTTGAGGTAGATCCGCTGAG
AAAAACTGAATTGAAGGGCTTTCCTGAAGATTACCGTAAGGTACCGATCG
CAATTGTAAACGGGGAGCAAATTAATGGATCTGACAAAGTTATAGACTGC
GTTCACCAACTCACGAAGGGAAGAGAGACACCTGTGTCACCAGATGAAAA
GAAGTGGCTCAAATGGCTCGACGATTACTTTATACATCTGATTGCTCCGA
ATATCTATCGCACACCGACCGAGTCATTACAAACTTTTGAATACATTGCA
GACAACTCCAAATTTTCTGCATGGCAACGTTCAACTATCCGCTACACGGG
AGCTGCCGCTATGTACTTTGTTGGACGGAAGATCAAGAAGAAGTACGATA
TTGAGGATGAACGAGAAGCAATACATAATGCTTTACGCGACTGGACTGAC
GCAATTACAAAAGCCGGGACGCCCTTCCTCGCCGGGCCAGAGCCGGGTGT
GGCGGACTTGTCCATTTTTGGCGTGCTCAAGGCTATTCGTACCTTCAACA
CATTCTCAGAAGTTCGTGAAAAGAACCCGGCGTTAGCTGATTGGTTTGAC
CGCACATCTCAAGCGGTTGGGGAACCATGTGTTACAGATCGTCAATAA
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protein sequence of Ggra5123.t1

>Ggra5123.t1 ID=Ggra5123.t1|Name=Ggra5123.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MALTLRSAGSLSRRLLSTRNTQILCRTITSIPLSQKGIKSSTTRLFACAS
SAATVFVLASTPQVFAEFSTIAAAKAQSTLPDITLYQYEVCPFCNKVRAY
LDYHNIPYRVVEVDPLRKTELKGFPEDYRKVPIAIVNGEQINGSDKVIDC
VHQLTKGRETPVSPDEKKWLKWLDDYFIHLIAPNIYRTPTESLQTFEYIA
DNSKFSAWQRSTIRYTGAAAMYFVGRKIKKKYDIEDEREAIHNALRDWTD
AITKAGTPFLAGPEPGVADLSIFGVLKAIRTFNTFSEVREKNPALADWFD
RTSQAVGEPCVTDRQ*
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mRNA from alignment at tig00000069_pilon:527194..528141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5123.t1 ID=Ggra5123.t1|Name=Ggra5123.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000069_pilon:527194..528141- (Gracilaria gracilis GNS1m male)
ATGGCTCTCACTCTTCGCTCAGCTGGATCTTTAAGTCGGCGATTATTGTC
TACAAGAAACACCCAGATCCTTTGTCGCACTATAACTAGCATACCATTAT
CACAAAAGGGGATCAAATCGTCTACAACGCGTCTCTTTGCCTGTGCTTCG
TCAGCTGCTACAGTGTTTGTTCTTGCAAGCACTCCCCAGGTATTCGCTGA
ATTTTCAACTATAGCAGCTGCGAAAGCTCAATCGACCCTCCCAGACATTA
CATTATACCAATACGAGGTTTGTCCGTTCTGCAACAAAGTACGCGCTTAT
CTTGACTATCATAACATTCCGTACAGAGTGGTTGAGGTAGATCCGCTGAG
AAAAACTGAATTGAAGGGCTTTCCTGAAGATTACCGTAAGGTACCGATCG
CAATTGTAAACGGGGAGCAAATTAATGGATCTGACAAAGTTATAGACTGC
GTTCACCAACTCACGAAGGGAAGAGAGACACCTGTGTCACCAGATGAAAA
GAAGTGGCTCAAATGGCTCGACGATTACTTTATACATCTGATTGCTCCGA
ATATCTATCGCACACCGACCGAGTCATTACAAACTTTTGAATACATTGCA
GACAACTCCAAATTTTCTGCATGGCAACGTTCAACTATCCGCTACACGGG
AGCTGCCGCTATGTACTTTGTTGGACGGAAGATCAAGAAGAAGTACGATA
TTGAGGATGAACGAGAAGCAATACATAATGCTTTACGCGACTGGACTGAC
GCAATTACAAAAGCCGGGACGCCCTTCCTCGCCGGGCCAGAGCCGGGTGT
GGCGGACTTGTCCATTTTTGGCGTGCTCAAGGCTATTCGTACCTTCAACA
CATTCTCAGAAGTTCGTGAAAAGAACCCGGCGTTAGCTGATTGGTTTGAC
CGCACATCTCAAGCGGTTGGGGAACCATGTGTTACAGATCGTCAATAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:527194..528141-

>Ggra5123.t1 ID=Ggra5123.t1|Name=Ggra5123.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000069_pilon:527194..528141- (Gracilaria gracilis GNS1m male)
ATGGCTCTCACTCTTCGCTCAGCTGGATCTTTAAGTCGGCGATTATTGTC
TACAAGAAACACCCAGATCCTTTGTCGCACTATAACTAGCATACCATTAT
CACAAAAGGGGATCAAATCGTCTACAACGCGTCTCTTTGCCTGTGCTTCG
TCAGCTGCTACAGTGTTTGTTCTTGCAAGCACTCCCCAGGTATTCGCTGA
ATTTTCAACTATAGCAGCTGCGAAAGCTCAATCGACCCTCCCAGACATTA
CATTATACCAATACGAGGTTTGTCCGTTCTGCAACAAAGTACGCGCTTAT
CTTGACTATCATAACATTCCGTACAGAGTGGTTGAGGTAGATCCGCTGAG
AAAAACTGAATTGAAGGGCTTTCCTGAAGATTACCGTAAGGTACCGATCG
CAATTGTAAACGGGGAGCAAATTAATGGATCTGACAAAGTTATAGACTGC
GTTCACCAACTCACGAAGGGAAGAGAGACACCTGTGTCACCAGATGAAAA
GAAGTGGCTCAAATGGCTCGACGATTACTTTATACATCTGATTGCTCCGA
ATATCTATCGCACACCGACCGAGTCATTACAAACTTTTGAATACATTGCA
GACAACTCCAAATTTTCTGCATGGCAACGTTCAACTATCCGCTACACGGG
AGCTGCCGCTATGTACTTTGTTGGACGGAAGATCAAGAAGAAGTACGATA
TTGAGGATGAACGAGAAGCAATACATAATGCTTTACGCGACTGGACTGAC
GCAATTACAAAAGCCGGGACGCCCTTCCTCGCCGGGCCAGAGCCGGGTGT
GGCGGACTTGTCCATTTTTGGCGTGCTCAAGGCTATTCGTACCTTCAACA
CATTCTCAGAAGTTCGTGAAAAGAACCCGGCGTTAGCTGATTGGTTTGAC
CGCACATCTCAAGCGGTTGGGGAACCATGTGTTACAGATCGTCAATAA
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