Ggra5116.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5116.t1
Unique Name	Ggra5116.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	617

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:503663..505513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002954075.1
PFAMs	tRNA-synt_2,tRNA_anti-codon
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K04567
KEGG Reaction	R03658
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Evalue	3.28e-229
EggNOG OGs	COG1190@1\|root,KOG1885@2759\|Eukaryota,37PXG@33090\|Viridiplantae,34H4C@3041\|Chlorophyta
EC	6.1.1.6
Description	lysyl-tRNA synthetase
COG category	J
BiGG Reaction	iRC1080.CRv4_Au5_s3_g10365_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5116	Ggra5116	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 503663..505513 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5116.t1.start1	Ggra5116.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 503663..503665 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5116.t1.CDS1	Ggra5116.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 503663..505513 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5116.t1.exon1	Ggra5116.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 503663..505513 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5116.t1.stop1	Ggra5116.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 505511..505513 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5116.t1	Ggra5116.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 503663..505513 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:503663..505513+
coding sequence from alignment at tig00000069_pilon:503663..505513+

mRNA sequence

>Ggra5116.t1 ID=Ggra5116.t1|Name=Ggra5116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=617bp
MTDVSEIMNGLQKMDTDQSGVPTTDPPVAFPEALQKAIDIAAAAAAEPGL
SKNELKRRQKAHRKAIEAAEKAVAKAKKAALKPAKKMDPNAEALHDSGEN
LDPSQYISNRKAAVRSLKDAGTNPYPHKFQVSMTIPEFIEKYAEDIVPGQ
QLEEPVVSLAGRIYSKRAAGTRLVFYDLRGDGVKVQIIADAQKGGSSFLE
DHARIRRGDIVGVRGCAGKSRKGEFSIFASEIVILSYCLHMLPKLEQGLT
DSEVRFRQRYLDLIVNQNNRDIFIRRSQIIKFIRRFLDDRDFLEVETPMM
SALPGGATAKPFKTYHEDLKTTMYMRVAPELYLKMLVIGGMERVYEIGRN
FRNESIDLTHNPEFTACEFYAAYLDYSDLMEITEQMLSSLVMEVTGSYVV
KYHPDGKDGREVCIDFSPPFRRISMVSGLEERLRVILGDEAFRIPKDLEA
ETTREFLNDLHNRLNLECEEPRTTARLLDSLVGEYIEPECTNPTFICDHP
QIMSPLAKWHRALPGMTERFELFANGKELCNAYTELNDPEVQRERFRVAQ
KDVKSGDEEAMVYDEDFCLSLEYGLPPTAGWGLGIDRLSMMLTDNYSIKE
VLLFPAMKPKNDLDRD*

spliced messenger RNA

>Ggra5116.t1 ID=Ggra5116.t1|Name=Ggra5116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1851bp|location=Sequence derived from alignment at tig00000069_pilon:503663..505513+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGATGTTTCAGAAATCATGAATGGACTTCAGAAGATGGACACAGA
TCAGAGTGGAGTCCCAACCACTGATCCCCCCGTTGCTTTTCCGGAAGCCC
TTCAGAAGGCAATTGACATTGCCGCTGCTGCCGCTGCCGAACCTGGACTT
AGCAAGAACGAACTGAAGCGAAGACAGAAAGCCCATCGTAAAGCCATTGA
AGCCGCAGAAAAAGCTGTAGCTAAGGCCAAGAAGGCTGCCTTGAAGCCCG
CTAAGAAGATGGATCCTAATGCTGAAGCATTACACGATTCCGGTGAGAAC
TTGGACCCATCTCAGTATATCTCTAATCGCAAAGCTGCAGTTCGTTCGTT
GAAGGATGCAGGCACCAATCCGTACCCTCACAAGTTTCAAGTGTCAATGA
CTATCCCGGAGTTCATTGAGAAATATGCTGAAGATATTGTTCCGGGCCAA
CAGCTTGAAGAGCCCGTCGTTTCTCTCGCAGGGAGAATATATTCCAAGAG
AGCTGCTGGTACCCGACTTGTTTTTTACGACTTGCGCGGCGATGGAGTGA
AGGTTCAAATCATTGCGGATGCTCAGAAAGGTGGTTCTAGTTTCCTAGAA
GATCATGCCCGGATAAGGAGAGGAGATATTGTTGGGGTGAGAGGATGCGC
TGGTAAGTCACGCAAGGGAGAATTTAGCATTTTCGCTTCCGAGATTGTGA
TACTATCGTATTGTCTCCACATGTTGCCGAAACTCGAGCAAGGGTTGACC
GACAGCGAAGTCAGGTTCAGGCAAAGATATCTGGACCTTATCGTGAACCA
GAATAATCGCGATATATTCATTCGACGAAGCCAGATCATAAAGTTCATCC
GCCGGTTTCTGGACGATCGGGATTTCCTTGAAGTTGAGACGCCAATGATG
AGCGCACTACCAGGGGGTGCCACTGCGAAACCATTCAAGACATATCACGA
AGATCTGAAGACTACTATGTATATGAGGGTTGCGCCAGAACTATACTTGA
AGATGCTTGTTATCGGAGGTATGGAACGTGTGTACGAAATCGGTAGAAAC
TTCCGCAACGAATCCATAGATCTTACTCACAACCCGGAGTTCACTGCCTG
TGAATTTTATGCAGCTTACTTGGACTACTCTGATCTTATGGAGATCACAG
AGCAAATGCTTTCATCATTAGTCATGGAAGTAACAGGCAGCTACGTCGTC
AAGTATCACCCAGATGGCAAAGATGGCCGGGAAGTTTGCATAGACTTTTC
ACCCCCTTTCCGAAGGATATCCATGGTATCTGGTTTAGAGGAGCGATTGC
GGGTTATTCTAGGAGATGAGGCGTTTAGAATCCCGAAGGACCTTGAAGCA
GAGACGACCCGCGAGTTCTTGAACGACCTCCACAACCGGCTCAATCTTGA
ATGTGAAGAGCCTCGCACAACTGCTCGTCTTCTAGACTCCCTGGTCGGAG
AATATATCGAACCTGAGTGTACCAATCCCACATTCATTTGCGATCACCCG
CAAATTATGTCCCCTCTTGCGAAATGGCATCGCGCCTTGCCAGGGATGAC
GGAACGTTTCGAACTTTTTGCGAACGGAAAAGAACTCTGCAACGCTTATA
CAGAACTGAATGATCCAGAAGTACAGCGAGAACGGTTCAGAGTAGCCCAG
AAAGATGTGAAGTCAGGAGATGAGGAAGCAATGGTATATGATGAAGACTT
CTGTCTTTCTTTAGAATACGGTTTGCCTCCTACTGCTGGATGGGGTCTAG
GGATTGACCGTTTGTCGATGATGCTCACTGACAACTACTCCATCAAAGAA
GTGCTGCTGTTTCCAGCGATGAAGCCGAAGAACGATTTAGACAGAGATTG
A

protein sequence of Ggra5116.t1

>Ggra5116.t1 ID=Ggra5116.t1|Name=Ggra5116.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=617bp
MTDVSEIMNGLQKMDTDQSGVPTTDPPVAFPEALQKAIDIAAAAAAEPGL
SKNELKRRQKAHRKAIEAAEKAVAKAKKAALKPAKKMDPNAEALHDSGEN
LDPSQYISNRKAAVRSLKDAGTNPYPHKFQVSMTIPEFIEKYAEDIVPGQ
QLEEPVVSLAGRIYSKRAAGTRLVFYDLRGDGVKVQIIADAQKGGSSFLE
DHARIRRGDIVGVRGCAGKSRKGEFSIFASEIVILSYCLHMLPKLEQGLT
DSEVRFRQRYLDLIVNQNNRDIFIRRSQIIKFIRRFLDDRDFLEVETPMM
SALPGGATAKPFKTYHEDLKTTMYMRVAPELYLKMLVIGGMERVYEIGRN
FRNESIDLTHNPEFTACEFYAAYLDYSDLMEITEQMLSSLVMEVTGSYVV
KYHPDGKDGREVCIDFSPPFRRISMVSGLEERLRVILGDEAFRIPKDLEA
ETTREFLNDLHNRLNLECEEPRTTARLLDSLVGEYIEPECTNPTFICDHP
QIMSPLAKWHRALPGMTERFELFANGKELCNAYTELNDPEVQRERFRVAQ
KDVKSGDEEAMVYDEDFCLSLEYGLPPTAGWGLGIDRLSMMLTDNYSIKE
VLLFPAMKPKNDLDRD*

mRNA from alignment at tig00000069_pilon:503663..505513+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5116.t1 ID=Ggra5116.t1|Name=Ggra5116.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1851bp|location=Sequence derived from alignment at tig00000069_pilon:503663..505513+ (Gracilaria gracilis GNS1m male)
ATGACGGATGTTTCAGAAATCATGAATGGACTTCAGAAGATGGACACAGA
TCAGAGTGGAGTCCCAACCACTGATCCCCCCGTTGCTTTTCCGGAAGCCC
TTCAGAAGGCAATTGACATTGCCGCTGCTGCCGCTGCCGAACCTGGACTT
AGCAAGAACGAACTGAAGCGAAGACAGAAAGCCCATCGTAAAGCCATTGA
AGCCGCAGAAAAAGCTGTAGCTAAGGCCAAGAAGGCTGCCTTGAAGCCCG
CTAAGAAGATGGATCCTAATGCTGAAGCATTACACGATTCCGGTGAGAAC
TTGGACCCATCTCAGTATATCTCTAATCGCAAAGCTGCAGTTCGTTCGTT
GAAGGATGCAGGCACCAATCCGTACCCTCACAAGTTTCAAGTGTCAATGA
CTATCCCGGAGTTCATTGAGAAATATGCTGAAGATATTGTTCCGGGCCAA
CAGCTTGAAGAGCCCGTCGTTTCTCTCGCAGGGAGAATATATTCCAAGAG
AGCTGCTGGTACCCGACTTGTTTTTTACGACTTGCGCGGCGATGGAGTGA
AGGTTCAAATCATTGCGGATGCTCAGAAAGGTGGTTCTAGTTTCCTAGAA
GATCATGCCCGGATAAGGAGAGGAGATATTGTTGGGGTGAGAGGATGCGC
TGGTAAGTCACGCAAGGGAGAATTTAGCATTTTCGCTTCCGAGATTGTGA
TACTATCGTATTGTCTCCACATGTTGCCGAAACTCGAGCAAGGGTTGACC
GACAGCGAAGTCAGGTTCAGGCAAAGATATCTGGACCTTATCGTGAACCA
GAATAATCGCGATATATTCATTCGACGAAGCCAGATCATAAAGTTCATCC
GCCGGTTTCTGGACGATCGGGATTTCCTTGAAGTTGAGACGCCAATGATG
AGCGCACTACCAGGGGGTGCCACTGCGAAACCATTCAAGACATATCACGA
AGATCTGAAGACTACTATGTATATGAGGGTTGCGCCAGAACTATACTTGA
AGATGCTTGTTATCGGAGGTATGGAACGTGTGTACGAAATCGGTAGAAAC
TTCCGCAACGAATCCATAGATCTTACTCACAACCCGGAGTTCACTGCCTG
TGAATTTTATGCAGCTTACTTGGACTACTCTGATCTTATGGAGATCACAG
AGCAAATGCTTTCATCATTAGTCATGGAAGTAACAGGCAGCTACGTCGTC
AAGTATCACCCAGATGGCAAAGATGGCCGGGAAGTTTGCATAGACTTTTC
ACCCCCTTTCCGAAGGATATCCATGGTATCTGGTTTAGAGGAGCGATTGC
GGGTTATTCTAGGAGATGAGGCGTTTAGAATCCCGAAGGACCTTGAAGCA
GAGACGACCCGCGAGTTCTTGAACGACCTCCACAACCGGCTCAATCTTGA
ATGTGAAGAGCCTCGCACAACTGCTCGTCTTCTAGACTCCCTGGTCGGAG
AATATATCGAACCTGAGTGTACCAATCCCACATTCATTTGCGATCACCCG
CAAATTATGTCCCCTCTTGCGAAATGGCATCGCGCCTTGCCAGGGATGAC
GGAACGTTTCGAACTTTTTGCGAACGGAAAAGAACTCTGCAACGCTTATA
CAGAACTGAATGATCCAGAAGTACAGCGAGAACGGTTCAGAGTAGCCCAG
AAAGATGTGAAGTCAGGAGATGAGGAAGCAATGGTATATGATGAAGACTT
CTGTCTTTCTTTAGAATACGGTTTGCCTCCTACTGCTGGATGGGGTCTAG
GGATTGACCGTTTGTCGATGATGCTCACTGACAACTACTCCATCAAAGAA
GTGCTGCTGTTTCCAGCGATGAAGCCGAAGAACGATTTAGACAGAGATTG
A

Coding sequence (CDS) from alignment at tig00000069_pilon:503663..505513+

>Ggra5116.t1 ID=Ggra5116.t1|Name=Ggra5116.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1851bp|location=Sequence derived from alignment at tig00000069_pilon:503663..505513+ (Gracilaria gracilis GNS1m male)
ATGACGGATGTTTCAGAAATCATGAATGGACTTCAGAAGATGGACACAGA
TCAGAGTGGAGTCCCAACCACTGATCCCCCCGTTGCTTTTCCGGAAGCCC
TTCAGAAGGCAATTGACATTGCCGCTGCTGCCGCTGCCGAACCTGGACTT
AGCAAGAACGAACTGAAGCGAAGACAGAAAGCCCATCGTAAAGCCATTGA
AGCCGCAGAAAAAGCTGTAGCTAAGGCCAAGAAGGCTGCCTTGAAGCCCG
CTAAGAAGATGGATCCTAATGCTGAAGCATTACACGATTCCGGTGAGAAC
TTGGACCCATCTCAGTATATCTCTAATCGCAAAGCTGCAGTTCGTTCGTT
GAAGGATGCAGGCACCAATCCGTACCCTCACAAGTTTCAAGTGTCAATGA
CTATCCCGGAGTTCATTGAGAAATATGCTGAAGATATTGTTCCGGGCCAA
CAGCTTGAAGAGCCCGTCGTTTCTCTCGCAGGGAGAATATATTCCAAGAG
AGCTGCTGGTACCCGACTTGTTTTTTACGACTTGCGCGGCGATGGAGTGA
AGGTTCAAATCATTGCGGATGCTCAGAAAGGTGGTTCTAGTTTCCTAGAA
GATCATGCCCGGATAAGGAGAGGAGATATTGTTGGGGTGAGAGGATGCGC
TGGTAAGTCACGCAAGGGAGAATTTAGCATTTTCGCTTCCGAGATTGTGA
TACTATCGTATTGTCTCCACATGTTGCCGAAACTCGAGCAAGGGTTGACC
GACAGCGAAGTCAGGTTCAGGCAAAGATATCTGGACCTTATCGTGAACCA
GAATAATCGCGATATATTCATTCGACGAAGCCAGATCATAAAGTTCATCC
GCCGGTTTCTGGACGATCGGGATTTCCTTGAAGTTGAGACGCCAATGATG
AGCGCACTACCAGGGGGTGCCACTGCGAAACCATTCAAGACATATCACGA
AGATCTGAAGACTACTATGTATATGAGGGTTGCGCCAGAACTATACTTGA
AGATGCTTGTTATCGGAGGTATGGAACGTGTGTACGAAATCGGTAGAAAC
TTCCGCAACGAATCCATAGATCTTACTCACAACCCGGAGTTCACTGCCTG
TGAATTTTATGCAGCTTACTTGGACTACTCTGATCTTATGGAGATCACAG
AGCAAATGCTTTCATCATTAGTCATGGAAGTAACAGGCAGCTACGTCGTC
AAGTATCACCCAGATGGCAAAGATGGCCGGGAAGTTTGCATAGACTTTTC
ACCCCCTTTCCGAAGGATATCCATGGTATCTGGTTTAGAGGAGCGATTGC
GGGTTATTCTAGGAGATGAGGCGTTTAGAATCCCGAAGGACCTTGAAGCA
GAGACGACCCGCGAGTTCTTGAACGACCTCCACAACCGGCTCAATCTTGA
ATGTGAAGAGCCTCGCACAACTGCTCGTCTTCTAGACTCCCTGGTCGGAG
AATATATCGAACCTGAGTGTACCAATCCCACATTCATTTGCGATCACCCG
CAAATTATGTCCCCTCTTGCGAAATGGCATCGCGCCTTGCCAGGGATGAC
GGAACGTTTCGAACTTTTTGCGAACGGAAAAGAACTCTGCAACGCTTATA
CAGAACTGAATGATCCAGAAGTACAGCGAGAACGGTTCAGAGTAGCCCAG
AAAGATGTGAAGTCAGGAGATGAGGAAGCAATGGTATATGATGAAGACTT
CTGTCTTTCTTTAGAATACGGTTTGCCTCCTACTGCTGGATGGGGTCTAG
GGATTGACCGTTTGTCGATGATGCTCACTGACAACTACTCCATCAAAGAA
GTGCTGCTGTTTCCAGCGATGAAGCCGAAGAACGATTTAGACAGAGATTG
A