Ggra5113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5113.t1
Unique Name	Ggra5113.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:499402..500754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5113	Ggra5113	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 499402..500754 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5113.t1.start1	Ggra5113.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 499402..499404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5113.t1.CDS1	Ggra5113.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 499402..500754 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5113.t1.exon1	Ggra5113.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 499402..500754 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5113.t1.stop1	Ggra5113.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 500752..500754 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5113.t1	Ggra5113.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 499402..500754 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:499402..500754+
coding sequence from alignment at tig00000069_pilon:499402..500754+

mRNA sequence

>Ggra5113.t1 ID=Ggra5113.t1|Name=Ggra5113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MPRGRASFPGRVIPRHVGPAMPKSGALSPSAAPSPSSRSKLKLRAVPASA
LAAAPAAAPAAAPAAVPAAVPAAVPAAVPAAVPGAVPAAVPAAVPAPAAA
PALAPRKPVKRRAFSPLPSPIARPRKRARDRARSGKRSPRNAAAVRDESV
LTLLKKPFTPDVKLVVPTNRLFAHEFGCLLFAFGDARFCVRETLELVEDC
VREEVRRIAISENPSFSSRLDARAMYRYRHYAKKCRANPNPAAAPADSVS
LPDPPRPDFLTVCTENLFTYLKCWLSATDYTYLSHCRSVSFARQESISPD
PKIRGTLRANLFRKWLGVPFQDKELLTLAHLTWELTGQLVQTALLCKHKG
DIQRQAFNFCSTMWTNERHWLEALGHGATTAFTLPCSDAHCTRLSAEIQR
FLTRPYFTTLHTHCHSKGLIPSHIYAALDKLREKGWGGRPQVRVGLCSFL
*

spliced messenger RNA

>Ggra5113.t1 ID=Ggra5113.t1|Name=Ggra5113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000069_pilon:499402..500754+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCGGGGGCGTGCATCATTCCCCGGTCGTGTGATTCCCCGTCATGT
GGGACCGGCCATGCCGAAGTCTGGCGCGCTCAGCCCGAGTGCGGCGCCGT
CTCCCTCGTCGCGCTCCAAGCTGAAACTGCGTGCTGTGCCTGCTTCTGCG
CTTGCTGCTGCGCCTGCTGCTGCGCCTGCTGCTGCGCCTGCTGCTGTACC
TGCTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCCG
GTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCTGCACCTGCCGCTGCG
CCGGCTCTCGCGCCACGAAAGCCAGTGAAGCGTCGCGCCTTTTCACCATT
GCCTTCCCCTATAGCTCGGCCGCGCAAGCGCGCGCGCGACAGAGCCCGCT
CTGGTAAACGGAGCCCGAGAAACGCTGCTGCTGTACGGGATGAGTCAGTG
CTCACGTTACTGAAGAAGCCGTTCACTCCTGATGTGAAGCTGGTTGTACC
CACTAACAGACTGTTCGCACACGAGTTTGGATGCTTGTTGTTTGCTTTTG
GTGATGCTCGCTTTTGTGTCAGAGAGACGTTAGAGCTGGTTGAGGATTGT
GTTCGCGAGGAGGTCCGTCGTATTGCGATAAGTGAAAACCCTTCTTTTTC
TTCGAGACTGGACGCCCGCGCCATGTACCGCTATCGCCACTATGCCAAGA
AGTGCCGTGCCAATCCAAACCCTGCTGCTGCTCCCGCTGATTCTGTGTCT
CTTCCGGACCCCCCCAGACCAGACTTTCTCACCGTTTGCACTGAGAATCT
TTTCACGTACTTGAAGTGTTGGCTTTCTGCAACTGACTATACTTACTTGT
CGCACTGCAGATCGGTTTCGTTTGCGAGACAAGAGAGCATTTCACCGGAC
CCCAAAATCCGCGGAACTCTTCGAGCTAACCTTTTCCGGAAGTGGTTGGG
GGTACCTTTCCAAGACAAAGAGCTGCTGACTCTGGCTCATCTCACGTGGG
AGCTCACGGGTCAACTCGTTCAAACGGCGCTCCTATGCAAGCACAAAGGC
GACATTCAACGCCAAGCATTCAATTTTTGTTCCACTATGTGGACCAACGA
GAGACATTGGTTGGAAGCTCTTGGCCATGGCGCTACCACTGCTTTCACCC
TACCTTGCTCTGACGCGCATTGCACAAGGCTTTCGGCTGAGATCCAGCGC
TTCTTGACCCGCCCTTATTTCACCACGCTTCATACGCATTGTCACTCAAA
GGGACTGATTCCCAGTCATATCTATGCCGCTCTGGACAAGTTGAGGGAGA
AGGGCTGGGGCGGTCGCCCTCAAGTTCGGGTTGGTTTGTGTAGCTTCTTG
TGA

protein sequence of Ggra5113.t1

>Ggra5113.t1 ID=Ggra5113.t1|Name=Ggra5113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MPRGRASFPGRVIPRHVGPAMPKSGALSPSAAPSPSSRSKLKLRAVPASA
LAAAPAAAPAAAPAAVPAAVPAAVPAAVPAAVPGAVPAAVPAAVPAPAAA
PALAPRKPVKRRAFSPLPSPIARPRKRARDRARSGKRSPRNAAAVRDESV
LTLLKKPFTPDVKLVVPTNRLFAHEFGCLLFAFGDARFCVRETLELVEDC
VREEVRRIAISENPSFSSRLDARAMYRYRHYAKKCRANPNPAAAPADSVS
LPDPPRPDFLTVCTENLFTYLKCWLSATDYTYLSHCRSVSFARQESISPD
PKIRGTLRANLFRKWLGVPFQDKELLTLAHLTWELTGQLVQTALLCKHKG
DIQRQAFNFCSTMWTNERHWLEALGHGATTAFTLPCSDAHCTRLSAEIQR
FLTRPYFTTLHTHCHSKGLIPSHIYAALDKLREKGWGGRPQVRVGLCSFL
*

mRNA from alignment at tig00000069_pilon:499402..500754+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5113.t1 ID=Ggra5113.t1|Name=Ggra5113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000069_pilon:499402..500754+ (Gracilaria gracilis GNS1m male)
ATGCCCCGGGGGCGTGCATCATTCCCCGGTCGTGTGATTCCCCGTCATGT
GGGACCGGCCATGCCGAAGTCTGGCGCGCTCAGCCCGAGTGCGGCGCCGT
CTCCCTCGTCGCGCTCCAAGCTGAAACTGCGTGCTGTGCCTGCTTCTGCG
CTTGCTGCTGCGCCTGCTGCTGCGCCTGCTGCTGCGCCTGCTGCTGTACC
TGCTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCCG
GTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCTGCACCTGCCGCTGCG
CCGGCTCTCGCGCCACGAAAGCCAGTGAAGCGTCGCGCCTTTTCACCATT
GCCTTCCCCTATAGCTCGGCCGCGCAAGCGCGCGCGCGACAGAGCCCGCT
CTGGTAAACGGAGCCCGAGAAACGCTGCTGCTGTACGGGATGAGTCAGTG
CTCACGTTACTGAAGAAGCCGTTCACTCCTGATGTGAAGCTGGTTGTACC
CACTAACAGACTGTTCGCACACGAGTTTGGATGCTTGTTGTTTGCTTTTG
GTGATGCTCGCTTTTGTGTCAGAGAGACGTTAGAGCTGGTTGAGGATTGT
GTTCGCGAGGAGGTCCGTCGTATTGCGATAAGTGAAAACCCTTCTTTTTC
TTCGAGACTGGACGCCCGCGCCATGTACCGCTATCGCCACTATGCCAAGA
AGTGCCGTGCCAATCCAAACCCTGCTGCTGCTCCCGCTGATTCTGTGTCT
CTTCCGGACCCCCCCAGACCAGACTTTCTCACCGTTTGCACTGAGAATCT
TTTCACGTACTTGAAGTGTTGGCTTTCTGCAACTGACTATACTTACTTGT
CGCACTGCAGATCGGTTTCGTTTGCGAGACAAGAGAGCATTTCACCGGAC
CCCAAAATCCGCGGAACTCTTCGAGCTAACCTTTTCCGGAAGTGGTTGGG
GGTACCTTTCCAAGACAAAGAGCTGCTGACTCTGGCTCATCTCACGTGGG
AGCTCACGGGTCAACTCGTTCAAACGGCGCTCCTATGCAAGCACAAAGGC
GACATTCAACGCCAAGCATTCAATTTTTGTTCCACTATGTGGACCAACGA
GAGACATTGGTTGGAAGCTCTTGGCCATGGCGCTACCACTGCTTTCACCC
TACCTTGCTCTGACGCGCATTGCACAAGGCTTTCGGCTGAGATCCAGCGC
TTCTTGACCCGCCCTTATTTCACCACGCTTCATACGCATTGTCACTCAAA
GGGACTGATTCCCAGTCATATCTATGCCGCTCTGGACAAGTTGAGGGAGA
AGGGCTGGGGCGGTCGCCCTCAAGTTCGGGTTGGTTTGTGTAGCTTCTTG
TGA

Coding sequence (CDS) from alignment at tig00000069_pilon:499402..500754+

>Ggra5113.t1 ID=Ggra5113.t1|Name=Ggra5113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000069_pilon:499402..500754+ (Gracilaria gracilis GNS1m male)
ATGCCCCGGGGGCGTGCATCATTCCCCGGTCGTGTGATTCCCCGTCATGT
GGGACCGGCCATGCCGAAGTCTGGCGCGCTCAGCCCGAGTGCGGCGCCGT
CTCCCTCGTCGCGCTCCAAGCTGAAACTGCGTGCTGTGCCTGCTTCTGCG
CTTGCTGCTGCGCCTGCTGCTGCGCCTGCTGCTGCGCCTGCTGCTGTACC
TGCTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCCG
GTGCTGTGCCTGCTGCTGTGCCTGCTGCTGTGCCTGCACCTGCCGCTGCG
CCGGCTCTCGCGCCACGAAAGCCAGTGAAGCGTCGCGCCTTTTCACCATT
GCCTTCCCCTATAGCTCGGCCGCGCAAGCGCGCGCGCGACAGAGCCCGCT
CTGGTAAACGGAGCCCGAGAAACGCTGCTGCTGTACGGGATGAGTCAGTG
CTCACGTTACTGAAGAAGCCGTTCACTCCTGATGTGAAGCTGGTTGTACC
CACTAACAGACTGTTCGCACACGAGTTTGGATGCTTGTTGTTTGCTTTTG
GTGATGCTCGCTTTTGTGTCAGAGAGACGTTAGAGCTGGTTGAGGATTGT
GTTCGCGAGGAGGTCCGTCGTATTGCGATAAGTGAAAACCCTTCTTTTTC
TTCGAGACTGGACGCCCGCGCCATGTACCGCTATCGCCACTATGCCAAGA
AGTGCCGTGCCAATCCAAACCCTGCTGCTGCTCCCGCTGATTCTGTGTCT
CTTCCGGACCCCCCCAGACCAGACTTTCTCACCGTTTGCACTGAGAATCT
TTTCACGTACTTGAAGTGTTGGCTTTCTGCAACTGACTATACTTACTTGT
CGCACTGCAGATCGGTTTCGTTTGCGAGACAAGAGAGCATTTCACCGGAC
CCCAAAATCCGCGGAACTCTTCGAGCTAACCTTTTCCGGAAGTGGTTGGG
GGTACCTTTCCAAGACAAAGAGCTGCTGACTCTGGCTCATCTCACGTGGG
AGCTCACGGGTCAACTCGTTCAAACGGCGCTCCTATGCAAGCACAAAGGC
GACATTCAACGCCAAGCATTCAATTTTTGTTCCACTATGTGGACCAACGA
GAGACATTGGTTGGAAGCTCTTGGCCATGGCGCTACCACTGCTTTCACCC
TACCTTGCTCTGACGCGCATTGCACAAGGCTTTCGGCTGAGATCCAGCGC
TTCTTGACCCGCCCTTATTTCACCACGCTTCATACGCATTGTCACTCAAA
GGGACTGATTCCCAGTCATATCTATGCCGCTCTGGACAAGTTGAGGGAGA
AGGGCTGGGGCGGTCGCCCTCAAGTTCGGGTTGGTTTGTGTAGCTTCTTG
TGA