Ggra5108.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5108.t1
Unique NameGgra5108.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:488905..489952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006822721.1
Preferred nameRPP30
PFAMsRNase_P_p30
Max annot lvl33208|Metazoa
KEGG koko:K03539
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000172,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005732,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue8.07e-43
EggNOG OGsCOG1603@1|root,KOG2363@2759|Eukaryota,38B4E@33154|Opisthokonta,3BE8P@33208|Metazoa,3CZ55@33213|Bilateria
EC3.1.26.5
Descriptionribonuclease P
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5108Ggra5108Gracilaria gracilis GNS1m malegenetig00000069_pilon 488905..489952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5108.t1Ggra5108.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 488905..489952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5108.t1.start1Ggra5108.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 488905..488907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5108.t1.CDS1Ggra5108.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 488905..489081 +
Ggra5108.t1.CDS2Ggra5108.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 489167..489229 +
Ggra5108.t1.CDS3Ggra5108.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 489286..489462 +
Ggra5108.t1.CDS4Ggra5108.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000069_pilon 489535..489675 +
Ggra5108.t1.CDS5Ggra5108.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000069_pilon 489749..489952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5108.t1.exon1Ggra5108.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 488905..489081 +
Ggra5108.t1.exon2Ggra5108.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 489167..489229 +
Ggra5108.t1.exon3Ggra5108.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 489286..489462 +
Ggra5108.t1.exon4Ggra5108.t1.exon4Gracilaria gracilis GNS1m maleexontig00000069_pilon 489535..489675 +
Ggra5108.t1.exon5Ggra5108.t1.exon5Gracilaria gracilis GNS1m maleexontig00000069_pilon 489749..489952 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5108.t1.intron1Ggra5108.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 489082..489166 +
Ggra5108.t1.intron2Ggra5108.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 489230..489285 +
Ggra5108.t1.intron3Ggra5108.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000069_pilon 489463..489534 +
Ggra5108.t1.intron4Ggra5108.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000069_pilon 489676..489748 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5108.t1.stop1Ggra5108.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 489950..489952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5108.t1 ID=Ggra5108.t1|Name=Ggra5108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MYHDLNICIPPAAQQTALTTLQRLGFQVVAFTTIVSNVTKLTDEHLPPRH
QLSVESGSLPGARAIKVLRRITLVINDMNQLPILNSSILSGYDLVAVTPT
TEKLLQQCMQFDIDIISLPLNKRLHFFIKRPQVHVAVDKGIVFEISYAHG
LRDLVSRRNLIANASALSSTTGGRHILLSSGAANHMELRGTHDVINLGVL
FGISQEHAYNSVTRNAISSVQHGEFRANYHKGIVRVTSNQQQQGSPMHLE
TSS*
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spliced messenger RNA

>Ggra5108.t1 ID=Ggra5108.t1|Name=Ggra5108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000069_pilon:488905..489952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCATGACCTCAACATATGCATTCCGCCCGCAGCGCAACAAACTGC
CCTCACAACTCTGCAAAGGCTCGGATTTCAAGTCGTAGCCTTTACAACTA
TCGTCTCAAACGTAACCAAGCTTACCGATGAACACCTTCCGCCTCGTCAC
CAGCTCTCAGTTGAATCCGGCTCATTGCCAGGTGCACGTGCCATCAAAGT
TTTGCGACGCATTACGTTGGTTATCAACGATATGAATCAGCTCCCAATTC
TCAACTCATCCATATTATCAGGGTACGATCTAGTAGCAGTGACGCCGACT
ACAGAAAAACTTTTGCAACAATGCATGCAGTTCGACATTGATATCATTTC
TCTCCCGTTGAACAAGCGTCTTCACTTCTTCATCAAGAGACCGCAGGTAC
ATGTAGCAGTGGATAAGGGAATCGTATTCGAAATATCATATGCACATGGC
CTACGAGATCTAGTTTCTCGCCGAAACCTGATTGCAAACGCCAGCGCGTT
ATCCTCAACGACCGGCGGTCGTCACATTCTCCTTTCCAGTGGGGCCGCAA
ACCATATGGAACTTCGAGGAACGCACGATGTTATCAATTTAGGGGTTCTA
TTCGGCATATCACAGGAACACGCGTACAACAGCGTAACTCGAAACGCTAT
CTCATCCGTTCAGCATGGCGAATTTCGCGCCAACTACCACAAGGGAATCG
TTCGAGTTACTAGTAATCAACAACAGCAGGGATCCCCTATGCATCTGGAA
ACATCCAGCTAA
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protein sequence of Ggra5108.t1

>Ggra5108.t1 ID=Ggra5108.t1|Name=Ggra5108.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MYHDLNICIPPAAQQTALTTLQRLGFQVVAFTTIVSNVTKLTDEHLPPRH
QLSVESGSLPGARAIKVLRRITLVINDMNQLPILNSSILSGYDLVAVTPT
TEKLLQQCMQFDIDIISLPLNKRLHFFIKRPQVHVAVDKGIVFEISYAHG
LRDLVSRRNLIANASALSSTTGGRHILLSSGAANHMELRGTHDVINLGVL
FGISQEHAYNSVTRNAISSVQHGEFRANYHKGIVRVTSNQQQQGSPMHLE
TSS*
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mRNA from alignment at tig00000069_pilon:488905..489952+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5108.t1 ID=Ggra5108.t1|Name=Ggra5108.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1048bp|location=Sequence derived from alignment at tig00000069_pilon:488905..489952+ (Gracilaria gracilis GNS1m male)
ATGTATCATGACCTCAACATATGCATTCCGCCCGCAGCGCAACAAACTGC
CCTCACAACTCTGCAAAGGCTCGGATTTCAAGTCGTAGCCTTTACAACTA
TCGTCTCAAACGTAACCAAGCTTACCGATGAACACCTTCCGCCTCGTCAC
CAGCTCTCAGTTGAATCCGGCTCATTGGTATGAATTTCACGGCCTTCCAC
GCCGAACCCTTCACGAAGTTCTCATTCTCACATTGTTTCCATTGATTTCA
ATTTTGAAACAGCCAGGTGCACGTGCCATCAAAGTTTTGCGACGCATTAC
GTTGGTTATCAACGATATGAATCAGGTACGACTTGTATAATGCAACGCTT
GTGTCATTATTCTATCCTAACGAAGCAACAGCTCCCAATTCTCAACTCAT
CCATATTATCAGGGTACGATCTAGTAGCAGTGACGCCGACTACAGAAAAA
CTTTTGCAACAATGCATGCAGTTCGACATTGATATCATTTCTCTCCCGTT
GAACAAGCGTCTTCACTTCTTCATCAAGAGACCGCAGGTACATGTAGCAG
TGGATAAGGTACGTGGCAAAGGGTTCAATATTCTATCATACATCAATTAA
AACCCATTCTAACCAAGAGGACTGCAATAGGGAATCGTATTCGAAATATC
ATATGCACATGGCCTACGAGATCTAGTTTCTCGCCGAAACCTGATTGCAA
ACGCCAGCGCGTTATCCTCAACGACCGGCGGTCGTCACATTCTCCTTTCC
AGTGGGGCCGCAAACCATATGGTAAGTGCTACTCTCTCAAACTACCTTCC
TTCCTACCTTATTCATGTCTGCTTCTTCTAACAAAATCCACCAGGAACTT
CGAGGAACGCACGATGTTATCAATTTAGGGGTTCTATTCGGCATATCACA
GGAACACGCGTACAACAGCGTAACTCGAAACGCTATCTCATCCGTTCAGC
ATGGCGAATTTCGCGCCAACTACCACAAGGGAATCGTTCGAGTTACTAGT
AATCAACAACAGCAGGGATCCCCTATGCATCTGGAAACATCCAGCTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:488905..489952+

>Ggra5108.t1 ID=Ggra5108.t1|Name=Ggra5108.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000069_pilon:488905..489952+ (Gracilaria gracilis GNS1m male)
ATGTATCATGACCTCAACATATGCATTCCGCCCGCAGCGCAACAAACTGC
CCTCACAACTCTGCAAAGGCTCGGATTTCAAGTCGTAGCCTTTACAACTA
TCGTCTCAAACGTAACCAAGCTTACCGATGAACACCTTCCGCCTCGTCAC
CAGCTCTCAGTTGAATCCGGCTCATTGCCAGGTGCACGTGCCATCAAAGT
TTTGCGACGCATTACGTTGGTTATCAACGATATGAATCAGCTCCCAATTC
TCAACTCATCCATATTATCAGGGTACGATCTAGTAGCAGTGACGCCGACT
ACAGAAAAACTTTTGCAACAATGCATGCAGTTCGACATTGATATCATTTC
TCTCCCGTTGAACAAGCGTCTTCACTTCTTCATCAAGAGACCGCAGGTAC
ATGTAGCAGTGGATAAGGGAATCGTATTCGAAATATCATATGCACATGGC
CTACGAGATCTAGTTTCTCGCCGAAACCTGATTGCAAACGCCAGCGCGTT
ATCCTCAACGACCGGCGGTCGTCACATTCTCCTTTCCAGTGGGGCCGCAA
ACCATATGGAACTTCGAGGAACGCACGATGTTATCAATTTAGGGGTTCTA
TTCGGCATATCACAGGAACACGCGTACAACAGCGTAACTCGAAACGCTAT
CTCATCCGTTCAGCATGGCGAATTTCGCGCCAACTACCACAAGGGAATCG
TTCGAGTTACTAGTAATCAACAACAGCAGGGATCCCCTATGCATCTGGAA
ACATCCAGCTAA
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