Ggra5103.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5103.t1
Unique Name	Ggra5103.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	329

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:475320..476306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX37232
PFAMs	NYN_YacP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06962
Evalue	4.06e-29
EggNOG OGs	COG3688@1\|root,2QTU8@2759\|Eukaryota
Description	YacP-like NYN domain
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5103	Ggra5103	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 475320..476306 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5103.t1.start1	Ggra5103.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 475320..475322 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5103.t1.CDS1	Ggra5103.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 475320..476306 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5103.t1.exon1	Ggra5103.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 475320..476306 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5103.t1.stop1	Ggra5103.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 476304..476306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5103.t1	Ggra5103.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 475320..476306 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:475320..476306+
coding sequence from alignment at tig00000069_pilon:475320..476306+

mRNA sequence

>Ggra5103.t1 ID=Ggra5103.t1|Name=Ggra5103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MSTCVPYGSHSSQKFLFPELMFMAPPLRNMTPYVLRPRRAENLCPSCRQL
RRTSTSAASQPMMKSKRRRQRSNSSEQTSGPARKVPPRINLESSTLSLRE
QLQIAKANVEPSAPSKPVVRTKFRRKKEGVVRSGKRLEAETKIPDGKFEI
AIDPIIFIDAYNVIGAWPRLRKWRDRSDLETARRLLIDDVTEYSYVRGWE
CVVVFDAQGTAEDTKEEKTIDRVTVIFTGSENADSYIERSIFELCESGAR
QVWAATSDIAQLNFSRAKGAHVMTSNLFIQEVKRARRETSDKLAEVDGNC
VRGNMLMSTVNEETRNRLYELRDKLEAS*

spliced messenger RNA

>Ggra5103.t1 ID=Ggra5103.t1|Name=Ggra5103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000069_pilon:475320..476306+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACATGCGTCCCATACGGCTCGCATTCGTCTCAAAAGTTCTTATT
CCCCGAACTCATGTTTATGGCGCCACCACTTCGCAACATGACACCGTATG
TGCTAAGACCACGCCGTGCTGAAAACTTGTGCCCTTCTTGTCGTCAGCTT
CGCAGAACATCCACCTCAGCCGCTTCTCAGCCAATGATGAAGTCCAAGCG
CCGTAGGCAGCGTTCTAACTCATCGGAGCAAACTTCAGGACCAGCGAGAA
AAGTCCCGCCACGGATCAACCTGGAGAGCTCTACTCTTAGTCTCAGAGAG
CAATTGCAGATTGCGAAGGCAAACGTTGAACCCTCTGCACCGTCAAAACC
GGTTGTTCGCACCAAATTTCGACGTAAAAAGGAGGGTGTTGTTCGTAGTG
GTAAGCGACTTGAAGCAGAAACGAAGATTCCTGACGGCAAATTCGAAATT
GCGATAGATCCTATTATCTTCATTGATGCATACAATGTAATTGGTGCATG
GCCGCGGCTACGAAAGTGGCGAGACCGATCCGATTTGGAAACTGCTCGCA
GACTTTTGATTGACGATGTCACTGAGTACTCCTACGTAAGGGGATGGGAG
TGCGTAGTTGTATTTGACGCCCAAGGGACAGCAGAGGATACCAAGGAAGA
GAAAACAATAGATAGAGTGACCGTAATCTTCACAGGCAGTGAGAATGCGG
ACTCATACATCGAACGCTCCATATTCGAACTGTGTGAAAGCGGTGCGCGA
CAAGTTTGGGCTGCGACCAGTGACATTGCACAGCTTAACTTTTCAAGAGC
AAAGGGGGCACATGTGATGACTTCCAACTTATTTATTCAAGAAGTGAAAC
GCGCTCGGCGAGAGACCTCAGACAAACTTGCAGAAGTAGATGGAAATTGT
GTGAGGGGGAACATGCTTATGTCGACTGTAAACGAGGAGACGAGAAACAG
ACTGTACGAACTCCGCGACAAGCTGGAAGCAAGTTGA

protein sequence of Ggra5103.t1

>Ggra5103.t1 ID=Ggra5103.t1|Name=Ggra5103.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MSTCVPYGSHSSQKFLFPELMFMAPPLRNMTPYVLRPRRAENLCPSCRQL
RRTSTSAASQPMMKSKRRRQRSNSSEQTSGPARKVPPRINLESSTLSLRE
QLQIAKANVEPSAPSKPVVRTKFRRKKEGVVRSGKRLEAETKIPDGKFEI
AIDPIIFIDAYNVIGAWPRLRKWRDRSDLETARRLLIDDVTEYSYVRGWE
CVVVFDAQGTAEDTKEEKTIDRVTVIFTGSENADSYIERSIFELCESGAR
QVWAATSDIAQLNFSRAKGAHVMTSNLFIQEVKRARRETSDKLAEVDGNC
VRGNMLMSTVNEETRNRLYELRDKLEAS*

mRNA from alignment at tig00000069_pilon:475320..476306+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5103.t1 ID=Ggra5103.t1|Name=Ggra5103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000069_pilon:475320..476306+ (Gracilaria gracilis GNS1m male)
ATGTCAACATGCGTCCCATACGGCTCGCATTCGTCTCAAAAGTTCTTATT
CCCCGAACTCATGTTTATGGCGCCACCACTTCGCAACATGACACCGTATG
TGCTAAGACCACGCCGTGCTGAAAACTTGTGCCCTTCTTGTCGTCAGCTT
CGCAGAACATCCACCTCAGCCGCTTCTCAGCCAATGATGAAGTCCAAGCG
CCGTAGGCAGCGTTCTAACTCATCGGAGCAAACTTCAGGACCAGCGAGAA
AAGTCCCGCCACGGATCAACCTGGAGAGCTCTACTCTTAGTCTCAGAGAG
CAATTGCAGATTGCGAAGGCAAACGTTGAACCCTCTGCACCGTCAAAACC
GGTTGTTCGCACCAAATTTCGACGTAAAAAGGAGGGTGTTGTTCGTAGTG
GTAAGCGACTTGAAGCAGAAACGAAGATTCCTGACGGCAAATTCGAAATT
GCGATAGATCCTATTATCTTCATTGATGCATACAATGTAATTGGTGCATG
GCCGCGGCTACGAAAGTGGCGAGACCGATCCGATTTGGAAACTGCTCGCA
GACTTTTGATTGACGATGTCACTGAGTACTCCTACGTAAGGGGATGGGAG
TGCGTAGTTGTATTTGACGCCCAAGGGACAGCAGAGGATACCAAGGAAGA
GAAAACAATAGATAGAGTGACCGTAATCTTCACAGGCAGTGAGAATGCGG
ACTCATACATCGAACGCTCCATATTCGAACTGTGTGAAAGCGGTGCGCGA
CAAGTTTGGGCTGCGACCAGTGACATTGCACAGCTTAACTTTTCAAGAGC
AAAGGGGGCACATGTGATGACTTCCAACTTATTTATTCAAGAAGTGAAAC
GCGCTCGGCGAGAGACCTCAGACAAACTTGCAGAAGTAGATGGAAATTGT
GTGAGGGGGAACATGCTTATGTCGACTGTAAACGAGGAGACGAGAAACAG
ACTGTACGAACTCCGCGACAAGCTGGAAGCAAGTTGA

Coding sequence (CDS) from alignment at tig00000069_pilon:475320..476306+

>Ggra5103.t1 ID=Ggra5103.t1|Name=Ggra5103.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000069_pilon:475320..476306+ (Gracilaria gracilis GNS1m male)
ATGTCAACATGCGTCCCATACGGCTCGCATTCGTCTCAAAAGTTCTTATT
CCCCGAACTCATGTTTATGGCGCCACCACTTCGCAACATGACACCGTATG
TGCTAAGACCACGCCGTGCTGAAAACTTGTGCCCTTCTTGTCGTCAGCTT
CGCAGAACATCCACCTCAGCCGCTTCTCAGCCAATGATGAAGTCCAAGCG
CCGTAGGCAGCGTTCTAACTCATCGGAGCAAACTTCAGGACCAGCGAGAA
AAGTCCCGCCACGGATCAACCTGGAGAGCTCTACTCTTAGTCTCAGAGAG
CAATTGCAGATTGCGAAGGCAAACGTTGAACCCTCTGCACCGTCAAAACC
GGTTGTTCGCACCAAATTTCGACGTAAAAAGGAGGGTGTTGTTCGTAGTG
GTAAGCGACTTGAAGCAGAAACGAAGATTCCTGACGGCAAATTCGAAATT
GCGATAGATCCTATTATCTTCATTGATGCATACAATGTAATTGGTGCATG
GCCGCGGCTACGAAAGTGGCGAGACCGATCCGATTTGGAAACTGCTCGCA
GACTTTTGATTGACGATGTCACTGAGTACTCCTACGTAAGGGGATGGGAG
TGCGTAGTTGTATTTGACGCCCAAGGGACAGCAGAGGATACCAAGGAAGA
GAAAACAATAGATAGAGTGACCGTAATCTTCACAGGCAGTGAGAATGCGG
ACTCATACATCGAACGCTCCATATTCGAACTGTGTGAAAGCGGTGCGCGA
CAAGTTTGGGCTGCGACCAGTGACATTGCACAGCTTAACTTTTCAAGAGC
AAAGGGGGCACATGTGATGACTTCCAACTTATTTATTCAAGAAGTGAAAC
GCGCTCGGCGAGAGACCTCAGACAAACTTGCAGAAGTAGATGGAAATTGT
GTGAGGGGGAACATGCTTATGTCGACTGTAAACGAGGAGACGAGAAACAG
ACTGTACGAACTCCGCGACAAGCTGGAAGCAAGTTGA