Ggra510.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra510.t1
Unique NameGgra510.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000238_piloncontigtig00000238_pilon:70743..71648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009598507.1
PFAMsE3_UbLigase_R4,ZZ
Max annot lvl35493|Streptophyta
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
GOsGO:0000003,GO:0000902,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005911,GO:0006810,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009826,GO:0009914,GO:0009926,GO:0009987,GO:0010015,GO:0010016,GO:0010033,GO:0010101,GO:0010102,GO:0010229,GO:0010311,GO:0010817,GO:0016020,GO:0016043,GO:0016049,GO:0022414,GO:0022622,GO:0030054,GO:0032501,GO:0032502,GO:0032989,GO:0040007,GO:0042221,GO:0043207,GO:0044424,GO:0044444,GO:0044464,GO:0048281,GO:0048364,GO:0048367,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071840,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392,GO:1905393
Evalue1.37e-30
EggNOG OGsKOG1776@1|root,KOG1776@2759|Eukaryota,37NYR@33090|Viridiplantae,3G7MS@35493|Streptophyta,44IG7@71274|asterids
EC2.3.2.27
DescriptionAuxin transport protein (BIG)
COG categoryT
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra510Ggra510Gracilaria gracilis GNS1m malegenetig00000238_pilon 70743..71648 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra510.t1.stop1Ggra510.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000238_pilon 70743..70745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra510.t1.CDS1Ggra510.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000238_pilon 70743..71648 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra510.t1.exon1Ggra510.t1.exon1Gracilaria gracilis GNS1m maleexontig00000238_pilon 70743..71648 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra510.t1.start1Ggra510.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000238_pilon 71646..71648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra510.t1Ggra510.t1Gracilaria gracilis GNS1m malepolypeptidetig00000238_pilon 70743..71648 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra510.t1 ID=Ggra510.t1|Name=Ggra510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=302bp
MSILREAGLSLVSTPQDSSGHRTEVNTDAADAKESNGSSETSFLKLVEEL
PDEKGPSCVVCGDGFQCRPEEALGFYVHCRKVSLDYLSGLDESSRESTGA
EKRPENVNREAGPNWDVWANGSARTNSSTGSKASGSSCFTTVTHMNAIHL
TCHKEAARMDRTSRRDEWDGASLRNSQTLCNNMFPVRPPASMKTEKDVEH
VGTIKTAKSTYSTAVDGYFKRLSSLGRVSVPQSKALLYDLGRSFLRFADG
KSAVFSEYSQGGGAHSNACFIPHLVQMAIYMIEVSASVRKADVFTAIQLC
K*
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spliced messenger RNA

>Ggra510.t1 ID=Ggra510.t1|Name=Ggra510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000238_pilon:70743..71648- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATTTTAAGGGAAGCGGGCCTCAGTCTAGTCTCTACCCCTCAGGA
CAGCTCAGGACACAGGACTGAAGTCAATACGGATGCTGCGGATGCGAAGG
AATCCAATGGGAGTTCTGAAACATCGTTCTTGAAGCTTGTAGAAGAACTC
CCTGATGAAAAGGGGCCCTCCTGTGTAGTTTGTGGGGATGGGTTTCAGTG
TCGCCCGGAAGAGGCTTTGGGATTTTATGTCCATTGCAGGAAAGTGTCAT
TGGACTATTTATCTGGTTTGGACGAGTCCTCGAGAGAATCTACAGGCGCG
GAGAAAAGACCAGAAAATGTTAATCGAGAAGCGGGACCGAACTGGGACGT
CTGGGCGAACGGCAGCGCGAGAACGAACTCAAGTACAGGTTCAAAAGCAA
GCGGCTCTTCTTGTTTTACAACCGTCACACACATGAACGCAATTCATCTT
ACGTGCCACAAGGAAGCCGCACGGATGGACCGCACCTCTCGAAGGGACGA
ATGGGATGGCGCATCTCTTAGAAATTCTCAGACTTTGTGCAATAACATGT
TCCCAGTGAGACCGCCAGCCAGTATGAAGACGGAAAAAGATGTAGAGCAT
GTGGGAACTATCAAAACTGCCAAGTCGACCTACTCTACAGCAGTTGATGG
ATACTTCAAGAGATTGTCCTCTCTTGGCCGTGTCAGTGTTCCGCAATCAA
AAGCATTGCTTTATGACCTTGGTCGAAGCTTTTTGCGCTTCGCAGATGGC
AAAAGTGCTGTATTCTCGGAGTACTCTCAAGGGGGAGGTGCACATTCTAA
TGCCTGTTTTATTCCCCACCTCGTTCAAATGGCCATATATATGATTGAAG
TATCAGCTTCAGTCCGAAAAGCTGATGTGTTTACGGCAATCCAACTTTGC
AAATGA
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protein sequence of Ggra510.t1

>Ggra510.t1 ID=Ggra510.t1|Name=Ggra510.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MSILREAGLSLVSTPQDSSGHRTEVNTDAADAKESNGSSETSFLKLVEEL
PDEKGPSCVVCGDGFQCRPEEALGFYVHCRKVSLDYLSGLDESSRESTGA
EKRPENVNREAGPNWDVWANGSARTNSSTGSKASGSSCFTTVTHMNAIHL
TCHKEAARMDRTSRRDEWDGASLRNSQTLCNNMFPVRPPASMKTEKDVEH
VGTIKTAKSTYSTAVDGYFKRLSSLGRVSVPQSKALLYDLGRSFLRFADG
KSAVFSEYSQGGGAHSNACFIPHLVQMAIYMIEVSASVRKADVFTAIQLC
K*
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mRNA from alignment at tig00000238_pilon:70743..71648-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra510.t1 ID=Ggra510.t1|Name=Ggra510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000238_pilon:70743..71648- (Gracilaria gracilis GNS1m male)
ATGTCCATTTTAAGGGAAGCGGGCCTCAGTCTAGTCTCTACCCCTCAGGA
CAGCTCAGGACACAGGACTGAAGTCAATACGGATGCTGCGGATGCGAAGG
AATCCAATGGGAGTTCTGAAACATCGTTCTTGAAGCTTGTAGAAGAACTC
CCTGATGAAAAGGGGCCCTCCTGTGTAGTTTGTGGGGATGGGTTTCAGTG
TCGCCCGGAAGAGGCTTTGGGATTTTATGTCCATTGCAGGAAAGTGTCAT
TGGACTATTTATCTGGTTTGGACGAGTCCTCGAGAGAATCTACAGGCGCG
GAGAAAAGACCAGAAAATGTTAATCGAGAAGCGGGACCGAACTGGGACGT
CTGGGCGAACGGCAGCGCGAGAACGAACTCAAGTACAGGTTCAAAAGCAA
GCGGCTCTTCTTGTTTTACAACCGTCACACACATGAACGCAATTCATCTT
ACGTGCCACAAGGAAGCCGCACGGATGGACCGCACCTCTCGAAGGGACGA
ATGGGATGGCGCATCTCTTAGAAATTCTCAGACTTTGTGCAATAACATGT
TCCCAGTGAGACCGCCAGCCAGTATGAAGACGGAAAAAGATGTAGAGCAT
GTGGGAACTATCAAAACTGCCAAGTCGACCTACTCTACAGCAGTTGATGG
ATACTTCAAGAGATTGTCCTCTCTTGGCCGTGTCAGTGTTCCGCAATCAA
AAGCATTGCTTTATGACCTTGGTCGAAGCTTTTTGCGCTTCGCAGATGGC
AAAAGTGCTGTATTCTCGGAGTACTCTCAAGGGGGAGGTGCACATTCTAA
TGCCTGTTTTATTCCCCACCTCGTTCAAATGGCCATATATATGATTGAAG
TATCAGCTTCAGTCCGAAAAGCTGATGTGTTTACGGCAATCCAACTTTGC
AAATGA
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Coding sequence (CDS) from alignment at tig00000238_pilon:70743..71648-

>Ggra510.t1 ID=Ggra510.t1|Name=Ggra510.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000238_pilon:70743..71648- (Gracilaria gracilis GNS1m male)
ATGTCCATTTTAAGGGAAGCGGGCCTCAGTCTAGTCTCTACCCCTCAGGA
CAGCTCAGGACACAGGACTGAAGTCAATACGGATGCTGCGGATGCGAAGG
AATCCAATGGGAGTTCTGAAACATCGTTCTTGAAGCTTGTAGAAGAACTC
CCTGATGAAAAGGGGCCCTCCTGTGTAGTTTGTGGGGATGGGTTTCAGTG
TCGCCCGGAAGAGGCTTTGGGATTTTATGTCCATTGCAGGAAAGTGTCAT
TGGACTATTTATCTGGTTTGGACGAGTCCTCGAGAGAATCTACAGGCGCG
GAGAAAAGACCAGAAAATGTTAATCGAGAAGCGGGACCGAACTGGGACGT
CTGGGCGAACGGCAGCGCGAGAACGAACTCAAGTACAGGTTCAAAAGCAA
GCGGCTCTTCTTGTTTTACAACCGTCACACACATGAACGCAATTCATCTT
ACGTGCCACAAGGAAGCCGCACGGATGGACCGCACCTCTCGAAGGGACGA
ATGGGATGGCGCATCTCTTAGAAATTCTCAGACTTTGTGCAATAACATGT
TCCCAGTGAGACCGCCAGCCAGTATGAAGACGGAAAAAGATGTAGAGCAT
GTGGGAACTATCAAAACTGCCAAGTCGACCTACTCTACAGCAGTTGATGG
ATACTTCAAGAGATTGTCCTCTCTTGGCCGTGTCAGTGTTCCGCAATCAA
AAGCATTGCTTTATGACCTTGGTCGAAGCTTTTTGCGCTTCGCAGATGGC
AAAAGTGCTGTATTCTCGGAGTACTCTCAAGGGGGAGGTGCACATTCTAA
TGCCTGTTTTATTCCCCACCTCGTTCAAATGGCCATATATATGATTGAAG
TATCAGCTTCAGTCCGAAAAGCTGATGTGTTTACGGCAATCCAACTTTGC
AAATGA
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