Ggra5098.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5098.t1
Unique NameGgra5098.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:464595..466127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704526.1
Preferred nameUBXN1
PFAMsThioredoxin,UBA,UBX
Max annot lvl2759|Eukaryota
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010466,GO:0010498,GO:0010605,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0030425,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031593,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0034098,GO:0036435,GO:0036477,GO:0042175,GO:0042176,GO:0042177,GO:0042995,GO:0043005,GO:0043025,GO:0043086,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045861,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051603,GO:0052547,GO:0060255,GO:0061136,GO:0065007,GO:0065009,GO:0071704,GO:0071796,GO:0080090,GO:0080134,GO:0080135,GO:0090085,GO:0090086,GO:0097447,GO:0097458,GO:0098796,GO:0098827,GO:0120025,GO:0120038,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901799,GO:1903050,GO:1903051,GO:1903093,GO:1903094,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903573,GO:1904292,GO:1904293,GO:1905897,GO:2000058,GO:2000059,GO:2000152,GO:2000157
Evalue1.13e-40
EggNOG OGsKOG0908@1|root,KOG2689@1|root,KOG0908@2759|Eukaryota,KOG2689@2759|Eukaryota
EC3.5.1.52
DescriptionK6-linked polyubiquitin modification-dependent protein binding
COG categoryA
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5098Ggra5098Gracilaria gracilis GNS1m malegenetig00000069_pilon 464595..466127 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5098.t1.stop1Ggra5098.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 464595..464597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5098.t1.CDS1Ggra5098.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 464595..466127 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5098.t1.exon1Ggra5098.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 464595..466127 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5098.t1.start1Ggra5098.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 466125..466127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5098.t1Ggra5098.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 464595..466127 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5098.t1 ID=Ggra5098.t1|Name=Ggra5098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MPIQHVASLQEFEAVLRSSADKLVVVDFFATWCGPCRAIAPFYEALSNRY
AERAIFVKVDVDQAQDVARFCSVSSMPTFHFYRRGVKVSHFSGADQNRLQ
NEIEMHAPSAAEVVFAGSGTRLGSQPVPSSAPSPSPAAAGVDDDMRQKRL
AAAAAAAKRMEAFKAEQQAAAEAAAQAAAQAAAQAAAPQAAAPATSQASE
PLPETAARATSESASPSQPAPAPQPAADPTPHSTANASSSEVPQNDPRLD
VNLLFLTQMVDDMGFPKVRAQKALILTGNKSVEQAVEWCFEHADDPDVDE
PLQIVTKEGKPKPKLSHEEAKKRADELYARARAKREAQEKKDAIEREKER
LKSGKETVEAKKKLEEESRRRAVEEKRREKREALAERKRVRAMLEADKKR
RHEKFHMPSSDPPAEASSSKPKPEPIDPSAAAGKIQFRMPDGSRVEGEFT
GDQTMDDVIYFLMTARPELGSRTLTFSQQYPRKVYTQNEYGMSLADLKLL
PRAALSVSYS*
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spliced messenger RNA

>Ggra5098.t1 ID=Ggra5098.t1|Name=Ggra5098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000069_pilon:464595..466127- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATCCAGCACGTCGCCTCGCTGCAGGAGTTCGAAGCTGTGCTCAG
GTCATCCGCCGACAAGCTCGTCGTCGTCGACTTCTTCGCCACCTGGTGCG
GACCATGTCGCGCAATAGCCCCATTCTACGAGGCGCTGTCCAACCGTTAC
GCGGAACGCGCAATTTTCGTCAAGGTCGACGTTGACCAAGCACAGGATGT
CGCCCGCTTCTGCTCCGTATCCTCCATGCCCACCTTTCACTTCTACCGCC
GCGGCGTCAAGGTGTCGCACTTCTCCGGCGCCGATCAGAACCGTTTGCAG
AATGAGATAGAAATGCATGCCCCCTCTGCTGCCGAGGTGGTGTTTGCGGG
CTCTGGCACTCGATTGGGGTCGCAGCCTGTTCCGTCCAGTGCGCCGTCGC
CATCGCCCGCTGCTGCAGGTGTCGACGATGACATGCGGCAGAAGAGATTG
GCTGCTGCTGCCGCCGCCGCCAAGAGAATGGAGGCTTTCAAGGCAGAGCA
GCAAGCGGCTGCCGAGGCAGCTGCTCAAGCGGCTGCCCAGGCGGCTGCTC
AAGCGGCTGCCCCTCAAGCGGCTGCTCCGGCGACTTCCCAAGCGAGTGAA
CCCCTGCCTGAAACAGCAGCTCGAGCTACCTCTGAATCTGCTTCACCTTC
GCAGCCAGCGCCAGCCCCACAGCCAGCCGCTGACCCTACACCTCACTCCA
CCGCAAATGCCTCGTCTTCTGAAGTCCCGCAGAATGACCCACGTCTCGAT
GTCAATTTGTTGTTTCTGACCCAAATGGTGGACGACATGGGATTCCCAAA
GGTTCGCGCGCAAAAGGCACTTATTCTAACTGGTAATAAGAGTGTGGAAC
AAGCCGTAGAGTGGTGTTTCGAACATGCTGATGACCCTGATGTTGACGAG
CCCTTACAGATTGTCACAAAGGAAGGAAAGCCAAAGCCCAAGTTGAGTCA
TGAGGAGGCTAAGAAGCGCGCAGATGAATTGTATGCACGCGCTAGAGCGA
AGAGGGAGGCGCAGGAAAAGAAAGATGCCATTGAGAGGGAGAAGGAACGC
CTTAAGTCTGGCAAAGAAACTGTTGAAGCTAAGAAGAAGCTCGAGGAAGA
AAGTCGAAGACGAGCTGTTGAGGAGAAGAGAAGAGAGAAAAGAGAAGCTC
TTGCAGAAAGAAAAAGGGTGCGTGCCATGCTTGAAGCAGACAAGAAGAGG
CGTCACGAAAAGTTCCATATGCCGTCGAGTGACCCGCCTGCCGAGGCGTC
TTCTTCTAAGCCGAAGCCTGAGCCAATTGATCCATCGGCAGCAGCCGGGA
AGATACAGTTCCGGATGCCGGACGGATCACGCGTCGAGGGCGAGTTCACA
GGCGACCAAACTATGGACGATGTCATTTACTTTTTGATGACGGCTCGTCC
TGAGCTGGGTTCTCGAACTCTGACATTTTCTCAGCAGTATCCACGAAAGG
TGTACACTCAGAATGAGTATGGAATGTCTCTCGCAGATCTCAAGCTGCTA
CCACGGGCTGCACTGTCAGTGTCTTACTCATAA
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protein sequence of Ggra5098.t1

>Ggra5098.t1 ID=Ggra5098.t1|Name=Ggra5098.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MPIQHVASLQEFEAVLRSSADKLVVVDFFATWCGPCRAIAPFYEALSNRY
AERAIFVKVDVDQAQDVARFCSVSSMPTFHFYRRGVKVSHFSGADQNRLQ
NEIEMHAPSAAEVVFAGSGTRLGSQPVPSSAPSPSPAAAGVDDDMRQKRL
AAAAAAAKRMEAFKAEQQAAAEAAAQAAAQAAAQAAAPQAAAPATSQASE
PLPETAARATSESASPSQPAPAPQPAADPTPHSTANASSSEVPQNDPRLD
VNLLFLTQMVDDMGFPKVRAQKALILTGNKSVEQAVEWCFEHADDPDVDE
PLQIVTKEGKPKPKLSHEEAKKRADELYARARAKREAQEKKDAIEREKER
LKSGKETVEAKKKLEEESRRRAVEEKRREKREALAERKRVRAMLEADKKR
RHEKFHMPSSDPPAEASSSKPKPEPIDPSAAAGKIQFRMPDGSRVEGEFT
GDQTMDDVIYFLMTARPELGSRTLTFSQQYPRKVYTQNEYGMSLADLKLL
PRAALSVSYS*
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mRNA from alignment at tig00000069_pilon:464595..466127-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5098.t1 ID=Ggra5098.t1|Name=Ggra5098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000069_pilon:464595..466127- (Gracilaria gracilis GNS1m male)
ATGCCGATCCAGCACGTCGCCTCGCTGCAGGAGTTCGAAGCTGTGCTCAG
GTCATCCGCCGACAAGCTCGTCGTCGTCGACTTCTTCGCCACCTGGTGCG
GACCATGTCGCGCAATAGCCCCATTCTACGAGGCGCTGTCCAACCGTTAC
GCGGAACGCGCAATTTTCGTCAAGGTCGACGTTGACCAAGCACAGGATGT
CGCCCGCTTCTGCTCCGTATCCTCCATGCCCACCTTTCACTTCTACCGCC
GCGGCGTCAAGGTGTCGCACTTCTCCGGCGCCGATCAGAACCGTTTGCAG
AATGAGATAGAAATGCATGCCCCCTCTGCTGCCGAGGTGGTGTTTGCGGG
CTCTGGCACTCGATTGGGGTCGCAGCCTGTTCCGTCCAGTGCGCCGTCGC
CATCGCCCGCTGCTGCAGGTGTCGACGATGACATGCGGCAGAAGAGATTG
GCTGCTGCTGCCGCCGCCGCCAAGAGAATGGAGGCTTTCAAGGCAGAGCA
GCAAGCGGCTGCCGAGGCAGCTGCTCAAGCGGCTGCCCAGGCGGCTGCTC
AAGCGGCTGCCCCTCAAGCGGCTGCTCCGGCGACTTCCCAAGCGAGTGAA
CCCCTGCCTGAAACAGCAGCTCGAGCTACCTCTGAATCTGCTTCACCTTC
GCAGCCAGCGCCAGCCCCACAGCCAGCCGCTGACCCTACACCTCACTCCA
CCGCAAATGCCTCGTCTTCTGAAGTCCCGCAGAATGACCCACGTCTCGAT
GTCAATTTGTTGTTTCTGACCCAAATGGTGGACGACATGGGATTCCCAAA
GGTTCGCGCGCAAAAGGCACTTATTCTAACTGGTAATAAGAGTGTGGAAC
AAGCCGTAGAGTGGTGTTTCGAACATGCTGATGACCCTGATGTTGACGAG
CCCTTACAGATTGTCACAAAGGAAGGAAAGCCAAAGCCCAAGTTGAGTCA
TGAGGAGGCTAAGAAGCGCGCAGATGAATTGTATGCACGCGCTAGAGCGA
AGAGGGAGGCGCAGGAAAAGAAAGATGCCATTGAGAGGGAGAAGGAACGC
CTTAAGTCTGGCAAAGAAACTGTTGAAGCTAAGAAGAAGCTCGAGGAAGA
AAGTCGAAGACGAGCTGTTGAGGAGAAGAGAAGAGAGAAAAGAGAAGCTC
TTGCAGAAAGAAAAAGGGTGCGTGCCATGCTTGAAGCAGACAAGAAGAGG
CGTCACGAAAAGTTCCATATGCCGTCGAGTGACCCGCCTGCCGAGGCGTC
TTCTTCTAAGCCGAAGCCTGAGCCAATTGATCCATCGGCAGCAGCCGGGA
AGATACAGTTCCGGATGCCGGACGGATCACGCGTCGAGGGCGAGTTCACA
GGCGACCAAACTATGGACGATGTCATTTACTTTTTGATGACGGCTCGTCC
TGAGCTGGGTTCTCGAACTCTGACATTTTCTCAGCAGTATCCACGAAAGG
TGTACACTCAGAATGAGTATGGAATGTCTCTCGCAGATCTCAAGCTGCTA
CCACGGGCTGCACTGTCAGTGTCTTACTCATAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:464595..466127-

>Ggra5098.t1 ID=Ggra5098.t1|Name=Ggra5098.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000069_pilon:464595..466127- (Gracilaria gracilis GNS1m male)
ATGCCGATCCAGCACGTCGCCTCGCTGCAGGAGTTCGAAGCTGTGCTCAG
GTCATCCGCCGACAAGCTCGTCGTCGTCGACTTCTTCGCCACCTGGTGCG
GACCATGTCGCGCAATAGCCCCATTCTACGAGGCGCTGTCCAACCGTTAC
GCGGAACGCGCAATTTTCGTCAAGGTCGACGTTGACCAAGCACAGGATGT
CGCCCGCTTCTGCTCCGTATCCTCCATGCCCACCTTTCACTTCTACCGCC
GCGGCGTCAAGGTGTCGCACTTCTCCGGCGCCGATCAGAACCGTTTGCAG
AATGAGATAGAAATGCATGCCCCCTCTGCTGCCGAGGTGGTGTTTGCGGG
CTCTGGCACTCGATTGGGGTCGCAGCCTGTTCCGTCCAGTGCGCCGTCGC
CATCGCCCGCTGCTGCAGGTGTCGACGATGACATGCGGCAGAAGAGATTG
GCTGCTGCTGCCGCCGCCGCCAAGAGAATGGAGGCTTTCAAGGCAGAGCA
GCAAGCGGCTGCCGAGGCAGCTGCTCAAGCGGCTGCCCAGGCGGCTGCTC
AAGCGGCTGCCCCTCAAGCGGCTGCTCCGGCGACTTCCCAAGCGAGTGAA
CCCCTGCCTGAAACAGCAGCTCGAGCTACCTCTGAATCTGCTTCACCTTC
GCAGCCAGCGCCAGCCCCACAGCCAGCCGCTGACCCTACACCTCACTCCA
CCGCAAATGCCTCGTCTTCTGAAGTCCCGCAGAATGACCCACGTCTCGAT
GTCAATTTGTTGTTTCTGACCCAAATGGTGGACGACATGGGATTCCCAAA
GGTTCGCGCGCAAAAGGCACTTATTCTAACTGGTAATAAGAGTGTGGAAC
AAGCCGTAGAGTGGTGTTTCGAACATGCTGATGACCCTGATGTTGACGAG
CCCTTACAGATTGTCACAAAGGAAGGAAAGCCAAAGCCCAAGTTGAGTCA
TGAGGAGGCTAAGAAGCGCGCAGATGAATTGTATGCACGCGCTAGAGCGA
AGAGGGAGGCGCAGGAAAAGAAAGATGCCATTGAGAGGGAGAAGGAACGC
CTTAAGTCTGGCAAAGAAACTGTTGAAGCTAAGAAGAAGCTCGAGGAAGA
AAGTCGAAGACGAGCTGTTGAGGAGAAGAGAAGAGAGAAAAGAGAAGCTC
TTGCAGAAAGAAAAAGGGTGCGTGCCATGCTTGAAGCAGACAAGAAGAGG
CGTCACGAAAAGTTCCATATGCCGTCGAGTGACCCGCCTGCCGAGGCGTC
TTCTTCTAAGCCGAAGCCTGAGCCAATTGATCCATCGGCAGCAGCCGGGA
AGATACAGTTCCGGATGCCGGACGGATCACGCGTCGAGGGCGAGTTCACA
GGCGACCAAACTATGGACGATGTCATTTACTTTTTGATGACGGCTCGTCC
TGAGCTGGGTTCTCGAACTCTGACATTTTCTCAGCAGTATCCACGAAAGG
TGTACACTCAGAATGAGTATGGAATGTCTCTCGCAGATCTCAAGCTGCTA
CCACGGGCTGCACTGTCAGTGTCTTACTCATAA
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