Ggra5092.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5092.t1
Unique Name	Ggra5092.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:438047..439684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN13808
PFAMs	N_BRCA1_IG,PB1,ZZ
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K17987
KEGG Pathway	ko04137,map04137
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031982,GO:0032182,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0051258,GO:0051259,GO:0061919,GO:0065003,GO:0071840,GO:0097708
Evalue	5.24e-05
EggNOG OGs	KOG4351@1\|root,KOG4582@1\|root,KOG4351@2759\|Eukaryota,KOG4582@2759\|Eukaryota,37HVT@33090\|Viridiplantae,3GCJ1@35493\|Streptophyta
Description	ubiquitin binding
COG category	V
BRITE	ko00000,ko00001,ko03029,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5092	Ggra5092	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 438047..439684 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5092.t1.start1	Ggra5092.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 438047..438049 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5092.t1.CDS1	Ggra5092.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 438047..439684 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5092.t1.exon1	Ggra5092.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 438047..439684 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5092.t1.stop1	Ggra5092.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 439682..439684 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5092.t1	Ggra5092.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 438047..439684 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:438047..439684+
coding sequence from alignment at tig00000069_pilon:438047..439684+

mRNA sequence

>Ggra5092.t1 ID=Ggra5092.t1|Name=Ggra5092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MKLPVKAAYGQVKRRFSIESGLSFSELSDQIASVFALTPPFSLTYQDNEG
DYIAVSTDTELNELFRLAEHESITLLRVFVNADAAAQTTSLPTPQSASQP
QPSQTQAQTQTPPQPPQPRQQSRANAPPSFFPPHVHDSFRRAEASMDAAQ
FNVDRVLQSVGNFLRDIGSNPHPTFAQPPPPPPPMPSWNATPPPFRHPPP
PPRHHRARHRRRREGPFGMFGGMGFAPFFSAMYPFMSSQGGPEVSQATRD
AFEQLKNAVMSSDNTDVAFQAARNAFPALRNWLISNLGQSGPINSESIDS
LISTVERSIRPSVGDDITNRTTHLLRTALNDSTVVEILRKIPWNMDLPID
IQAEFDSAFYAPDNDMPFQTHVNVECDNCEKCPIVGNRYQATNRANYDLC
SKCYEDAAVSKEGIEFKKLSYVWEVSLGDAKVPNAPLSLRSRGANVAFLQ
KLLTDLGYMNESMYRRVVGMYGPRTRSAVSQFQREYGLDGTAQLGVYDDI
TAASMASMLEDQVPPTAATGGTSTPAQDTGPVPPTSAPDPAPAQG*

spliced messenger RNA

>Ggra5092.t1 ID=Ggra5092.t1|Name=Ggra5092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000069_pilon:438047..439684+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTGCCCGTTAAGGCCGCCTACGGCCAGGTGAAGCGCCGCTTCTC
CATTGAGAGCGGTCTGTCCTTTAGCGAGCTTTCCGATCAGATTGCCTCTG
TCTTCGCGCTCACCCCACCTTTCAGCCTCACCTACCAGGACAATGAGGGT
GACTACATCGCCGTCTCCACCGACACAGAGCTCAATGAGCTCTTCCGTCT
CGCTGAGCACGAGTCCATAACCCTGCTCCGTGTCTTCGTCAACgccgatg
ccgctgcccagaccacctcgctacccaccccgcagtccgcctcgcagcca
cagccgtctcagacgcaggcgcagacgcagacgccgccgcagccgcCTCA
GCCGCGCCAACAGTCGCGTGCCAATGCGCCTCCGTCCTTCTTCCCGCCTC
ACGTGCATGACTCCTTCCGTCGTGCGGAGGCGTCTATGGATGCCGCCCAA
TTCAACGTGGATCGCGTGCTTCAGTCCGTCGGAAACTTCCTCAGGGATAT
TGGATCTAATCCTCATCCAACATTTGCTCAGCCACCTCCGCCACCTCCGC
CGATGCCGTCCTGGAATGCTACTCCGCCGCCGTTCCGTCACCCCCCGCCG
CCGCCCCGCCACCACCGTGCTCGTCACCGTCGTCGTCGTGAAGGTCCGTT
TGGTATGTTTGGCGGTATGGGGTTTGCTCCCTTCTTTTCAGCCATGTACC
CGTTCATGTCTTCTCAGGGCGGTCCCGAGGTTTCGCAGGCTACGCGTGAT
GCATTTGAGCAGTTGAAGAACGCTGTTATGAGCTCTGATAACACAGACGT
TGCTTTTCAGGCTGCTCGGAATGCCTTCCCTGCTTTGAGGAACTGGTTGA
TTTCCAACCTTGGTCAAAGTGGTCCCATCAATTCGGAATCTATTGATTCT
CTGATTTCTACTGTTGAGAGGTCCATTCGTCCCTCCGTCGGAGACGATAT
CACCAATCGTACCACTCATCTTCTTCGCACGGCCTTGAATGATAGCACCG
TCGTGGAGATCTTACGTAAGATCCCTTGGAACATGGATCTTCCTATCGAT
ATCCAAGCTGAATTCGATTCCGCGTTCTATGCGCCGGATAATGATATGCC
GTTCCAAACTCATGTCAATGTTGAATGCGACAATTGCGAAAAGTGTCCCA
TTGTTGGCAATCGTTATCAGGCCACCAATCGTGCGAACTACGATCTTTGT
TCCAAGTGCTACGAGGATGCAGCTGTGTCAAAGGAAGGAATTGAGTTCAA
GAAACTCTCTTACGTCTGGGAAGTTAGCCTTGGTGATGCAAAGGTACCCA
ACGCACCTCTGTCCCTCCGCTCGCGTGGTGCCAACGTCGCGTTTCTGCAG
AAGTTACTTACCGACCTGGGCTACATGAATGAATCCATGTATCGTCGTGT
TGTCGGTATGTATGGCCCTCGTACGCGCAGCGCTGTCTCGCAATTTCAGC
GTGAGTATGGCCTAGACGGCACTGCTCAGCTTGGTGTCTACGATGATATT
ACTGCTGCTAGTATGGCATCTATGCTGGAGGATCAGGTTCCGCCGACTGC
TGCGACGGGAGGTACTAGTACTCCTGCTCAGGACACTGGCCCTGTTCCGC
CGACGAGCGCCCCCGACCCGGCTCCTGCTCAGGGTTAG

protein sequence of Ggra5092.t1

>Ggra5092.t1 ID=Ggra5092.t1|Name=Ggra5092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MKLPVKAAYGQVKRRFSIESGLSFSELSDQIASVFALTPPFSLTYQDNEG
DYIAVSTDTELNELFRLAEHESITLLRVFVNADAAAQTTSLPTPQSASQP
QPSQTQAQTQTPPQPPQPRQQSRANAPPSFFPPHVHDSFRRAEASMDAAQ
FNVDRVLQSVGNFLRDIGSNPHPTFAQPPPPPPPMPSWNATPPPFRHPPP
PPRHHRARHRRRREGPFGMFGGMGFAPFFSAMYPFMSSQGGPEVSQATRD
AFEQLKNAVMSSDNTDVAFQAARNAFPALRNWLISNLGQSGPINSESIDS
LISTVERSIRPSVGDDITNRTTHLLRTALNDSTVVEILRKIPWNMDLPID
IQAEFDSAFYAPDNDMPFQTHVNVECDNCEKCPIVGNRYQATNRANYDLC
SKCYEDAAVSKEGIEFKKLSYVWEVSLGDAKVPNAPLSLRSRGANVAFLQ
KLLTDLGYMNESMYRRVVGMYGPRTRSAVSQFQREYGLDGTAQLGVYDDI
TAASMASMLEDQVPPTAATGGTSTPAQDTGPVPPTSAPDPAPAQG*

mRNA from alignment at tig00000069_pilon:438047..439684+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5092.t1 ID=Ggra5092.t1|Name=Ggra5092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000069_pilon:438047..439684+ (Gracilaria gracilis GNS1m male)
ATGAAATTGCCCGTTAAGGCCGCCTACGGCCAGGTGAAGCGCCGCTTCTC
CATTGAGAGCGGTCTGTCCTTTAGCGAGCTTTCCGATCAGATTGCCTCTG
TCTTCGCGCTCACCCCACCTTTCAGCCTCACCTACCAGGACAATGAGGGT
GACTACATCGCCGTCTCCACCGACACAGAGCTCAATGAGCTCTTCCGTCT
CGCTGAGCACGAGTCCATAACCCTGCTCCGTGTCTTCGTCAACgccgatg
ccgctgcccagaccacctcgctacccaccccgcagtccgcctcgcagcca
cagccgtctcagacgcaggcgcagacgcagacgccgccgcagccgcCTCA
GCCGCGCCAACAGTCGCGTGCCAATGCGCCTCCGTCCTTCTTCCCGCCTC
ACGTGCATGACTCCTTCCGTCGTGCGGAGGCGTCTATGGATGCCGCCCAA
TTCAACGTGGATCGCGTGCTTCAGTCCGTCGGAAACTTCCTCAGGGATAT
TGGATCTAATCCTCATCCAACATTTGCTCAGCCACCTCCGCCACCTCCGC
CGATGCCGTCCTGGAATGCTACTCCGCCGCCGTTCCGTCACCCCCCGCCG
CCGCCCCGCCACCACCGTGCTCGTCACCGTCGTCGTCGTGAAGGTCCGTT
TGGTATGTTTGGCGGTATGGGGTTTGCTCCCTTCTTTTCAGCCATGTACC
CGTTCATGTCTTCTCAGGGCGGTCCCGAGGTTTCGCAGGCTACGCGTGAT
GCATTTGAGCAGTTGAAGAACGCTGTTATGAGCTCTGATAACACAGACGT
TGCTTTTCAGGCTGCTCGGAATGCCTTCCCTGCTTTGAGGAACTGGTTGA
TTTCCAACCTTGGTCAAAGTGGTCCCATCAATTCGGAATCTATTGATTCT
CTGATTTCTACTGTTGAGAGGTCCATTCGTCCCTCCGTCGGAGACGATAT
CACCAATCGTACCACTCATCTTCTTCGCACGGCCTTGAATGATAGCACCG
TCGTGGAGATCTTACGTAAGATCCCTTGGAACATGGATCTTCCTATCGAT
ATCCAAGCTGAATTCGATTCCGCGTTCTATGCGCCGGATAATGATATGCC
GTTCCAAACTCATGTCAATGTTGAATGCGACAATTGCGAAAAGTGTCCCA
TTGTTGGCAATCGTTATCAGGCCACCAATCGTGCGAACTACGATCTTTGT
TCCAAGTGCTACGAGGATGCAGCTGTGTCAAAGGAAGGAATTGAGTTCAA
GAAACTCTCTTACGTCTGGGAAGTTAGCCTTGGTGATGCAAAGGTACCCA
ACGCACCTCTGTCCCTCCGCTCGCGTGGTGCCAACGTCGCGTTTCTGCAG
AAGTTACTTACCGACCTGGGCTACATGAATGAATCCATGTATCGTCGTGT
TGTCGGTATGTATGGCCCTCGTACGCGCAGCGCTGTCTCGCAATTTCAGC
GTGAGTATGGCCTAGACGGCACTGCTCAGCTTGGTGTCTACGATGATATT
ACTGCTGCTAGTATGGCATCTATGCTGGAGGATCAGGTTCCGCCGACTGC
TGCGACGGGAGGTACTAGTACTCCTGCTCAGGACACTGGCCCTGTTCCGC
CGACGAGCGCCCCCGACCCGGCTCCTGCTCAGGGTTAG

Coding sequence (CDS) from alignment at tig00000069_pilon:438047..439684+

>Ggra5092.t1 ID=Ggra5092.t1|Name=Ggra5092.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000069_pilon:438047..439684+ (Gracilaria gracilis GNS1m male)
ATGAAATTGCCCGTTAAGGCCGCCTACGGCCAGGTGAAGCGCCGCTTCTC
CATTGAGAGCGGTCTGTCCTTTAGCGAGCTTTCCGATCAGATTGCCTCTG
TCTTCGCGCTCACCCCACCTTTCAGCCTCACCTACCAGGACAATGAGGGT
GACTACATCGCCGTCTCCACCGACACAGAGCTCAATGAGCTCTTCCGTCT
CGCTGAGCACGAGTCCATAACCCTGCTCCGTGTCTTCGTCAACgccgatg
ccgctgcccagaccacctcgctacccaccccgcagtccgcctcgcagcca
cagccgtctcagacgcaggcgcagacgcagacgccgccgcagccgcCTCA
GCCGCGCCAACAGTCGCGTGCCAATGCGCCTCCGTCCTTCTTCCCGCCTC
ACGTGCATGACTCCTTCCGTCGTGCGGAGGCGTCTATGGATGCCGCCCAA
TTCAACGTGGATCGCGTGCTTCAGTCCGTCGGAAACTTCCTCAGGGATAT
TGGATCTAATCCTCATCCAACATTTGCTCAGCCACCTCCGCCACCTCCGC
CGATGCCGTCCTGGAATGCTACTCCGCCGCCGTTCCGTCACCCCCCGCCG
CCGCCCCGCCACCACCGTGCTCGTCACCGTCGTCGTCGTGAAGGTCCGTT
TGGTATGTTTGGCGGTATGGGGTTTGCTCCCTTCTTTTCAGCCATGTACC
CGTTCATGTCTTCTCAGGGCGGTCCCGAGGTTTCGCAGGCTACGCGTGAT
GCATTTGAGCAGTTGAAGAACGCTGTTATGAGCTCTGATAACACAGACGT
TGCTTTTCAGGCTGCTCGGAATGCCTTCCCTGCTTTGAGGAACTGGTTGA
TTTCCAACCTTGGTCAAAGTGGTCCCATCAATTCGGAATCTATTGATTCT
CTGATTTCTACTGTTGAGAGGTCCATTCGTCCCTCCGTCGGAGACGATAT
CACCAATCGTACCACTCATCTTCTTCGCACGGCCTTGAATGATAGCACCG
TCGTGGAGATCTTACGTAAGATCCCTTGGAACATGGATCTTCCTATCGAT
ATCCAAGCTGAATTCGATTCCGCGTTCTATGCGCCGGATAATGATATGCC
GTTCCAAACTCATGTCAATGTTGAATGCGACAATTGCGAAAAGTGTCCCA
TTGTTGGCAATCGTTATCAGGCCACCAATCGTGCGAACTACGATCTTTGT
TCCAAGTGCTACGAGGATGCAGCTGTGTCAAAGGAAGGAATTGAGTTCAA
GAAACTCTCTTACGTCTGGGAAGTTAGCCTTGGTGATGCAAAGGTACCCA
ACGCACCTCTGTCCCTCCGCTCGCGTGGTGCCAACGTCGCGTTTCTGCAG
AAGTTACTTACCGACCTGGGCTACATGAATGAATCCATGTATCGTCGTGT
TGTCGGTATGTATGGCCCTCGTACGCGCAGCGCTGTCTCGCAATTTCAGC
GTGAGTATGGCCTAGACGGCACTGCTCAGCTTGGTGTCTACGATGATATT
ACTGCTGCTAGTATGGCATCTATGCTGGAGGATCAGGTTCCGCCGACTGC
TGCGACGGGAGGTACTAGTACTCCTGCTCAGGACACTGGCCCTGTTCCGC
CGACGAGCGCCCCCGACCCGGCTCCTGCTCAGGGTTAG