Ggra5086.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5086.t1
Unique NameGgra5086.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:425923..426990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702271.1
Preferred nameDEGS1
PFAMsFA_desaturase,Lipid_DES
Max annot lvl2759|Eukaryota
KEGG rclassRC00824
KEGG koko:K04712,ko:K20028
KEGG ReactionR06519
KEGG Pathwayko00600,ko01100,ko04071,map00600,map01100,map04071
KEGG ModuleM00094,M00099
GOsGO:0000003,GO:0000170,GO:0000212,GO:0000226,GO:0000280,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005886,GO:0005887,GO:0006066,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006643,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008610,GO:0009055,GO:0009058,GO:0009987,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016053,GO:0016192,GO:0016491,GO:0016705,GO:0019751,GO:0019752,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022900,GO:0030141,GO:0030148,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032787,GO:0032940,GO:0033559,GO:0034311,GO:0034312,GO:0034641,GO:0035579,GO:0036230,GO:0042119,GO:0042175,GO:0042284,GO:0042581,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045055,GO:0045321,GO:0046165,GO:0046173,GO:0046394,GO:0046467,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0046903,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051225,GO:0051234,GO:0051321,GO:0051704,GO:0055114,GO:0065007,GO:0070925,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0090306,GO:0097164,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:0140013,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1903046
Evalue1.2e-135
EggNOG OGsKOG2987@1|root,KOG2987@2759|Eukaryota
EC1.14.18.5,1.14.19.17,2.3.1.225
Descriptionsphingolipid delta-4 desaturase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5086Ggra5086Gracilaria gracilis GNS1m malegenetig00000069_pilon 425923..426990 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5086.t1.stop1Ggra5086.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 425923..425925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5086.t1.CDS1Ggra5086.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 425923..426990 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5086.t1.exon1Ggra5086.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 425923..426990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5086.t1.start1Ggra5086.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 426988..426990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5086.t1Ggra5086.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 425923..426990 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5086.t1 ID=Ggra5086.t1|Name=Ggra5086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MGKGGSSEEVLVRSNLLSTEDAEAIVHRKSGARHPHADRRAEILSKHPEV
KNLFGTYRGTAVYSVVLVLFQIALAVLVSVNFPVWVGVLLSYSVGAVVDH
ALWVLIHDATHNLVFKSVAKNRVVLLICNIPHVFPSAMMFRYYHILHHIE
LNRAHKDPDVPFEWEAKFIGNSPFRKSIWLAFFFIVQALRTAFYTYRIPK
GTELAWMAFNWLLNVAVHAVIVSYYGWAPLLFLAFASISSIGLHPLGARW
IQEHYPTQPFQATYSYYGIANRFAFAIGYHVEHHDFPSVPWNKLAVLKAT
APEYYDTLFAYTSYSELLKDFIFERKWSLANRFEVEREMSEKASPTADAF
TKKEQ*
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spliced messenger RNA

>Ggra5086.t1 ID=Ggra5086.t1|Name=Ggra5086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000069_pilon:425923..426990- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGGGAGGATCTTCCGAAGAGGTTCTTGTTCGAAGTAATCTTCT
TTCAACCGAAGATGCCGAGGCCATTGTTCATCGCAAGAGCGGCGCGAGAC
ATCCGCATGCTGATCGCCGCGCTGAGATTTTGAGCAAGCACCCCGAAGTC
AAGAATCTTTTCGGTACTTACCGTGGAACTGCCGTGTATTCTGTCGTGCT
CGTTTTGTTTCAGATTGCTCTTGCTGTGCTGGTCAGCGTCAACTTCCCCG
TATGGGTTGGTGTTCTACTGAGTTATTCAGTTGGTGCCGTGGTGGACCAT
GCATTGTGGGTTTTGATTCATGATGCCACTCACAACCTTGTCTTCAAGAG
CGTTGCGAAGAATCGAGTTGTGCTATTAATATGTAACATTCCCCATGTAT
TTCCATCCGCCATGATGTTTCGTTATTACCATATTCTTCATCACATTGAG
CTCAATCGCGCACACAAAGATCCTGACGTTCCGTTTGAATGGGAAGCCAA
ATTTATCGGAAACTCGCCGTTTAGAAAGTCCATCTGGCTTGCGTTTTTCT
TTATTGTTCAGGCCTTACGCACCGCCTTTTACACATATCGAATTCCGAAG
GGAACTGAGCTTGCATGGATGGCCTTCAATTGGCTTTTGAATGTTGCCGT
CCATGCCGTCATTGTATCGTACTATGGATGGGCTCCTCTGCTGTTCCTAG
CGTTTGCGTCCATTTCTAGTATTGGTTTGCATCCGTTGGGCGCTCGCTGG
ATTCAAGAACATTATCCTACACAACCTTTTCAGGCTACTTATTCCTATTA
TGGAATTGCTAATCGCTTTGCGTTTGCGATTGGCTATCATGTCGAACATC
ACGACTTCCCGTCTGTTCCTTGGAATAAGCTTGCTGTGCTTAAGGCTACC
GCGCCAGAGTACTATGATACTTTGTTTGCGTATACCAGCTACTCAGAACT
ACTCAAGGACTTCATCTTTGAAAGAAAATGGAGTTTGGCTAATCGTTTCG
AGGTGGAACGCGAAATGTCAGAGAAGGCTTCTCCAACAGCTGATGCCTTC
ACAAAGAAAGAACAATAG
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protein sequence of Ggra5086.t1

>Ggra5086.t1 ID=Ggra5086.t1|Name=Ggra5086.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MGKGGSSEEVLVRSNLLSTEDAEAIVHRKSGARHPHADRRAEILSKHPEV
KNLFGTYRGTAVYSVVLVLFQIALAVLVSVNFPVWVGVLLSYSVGAVVDH
ALWVLIHDATHNLVFKSVAKNRVVLLICNIPHVFPSAMMFRYYHILHHIE
LNRAHKDPDVPFEWEAKFIGNSPFRKSIWLAFFFIVQALRTAFYTYRIPK
GTELAWMAFNWLLNVAVHAVIVSYYGWAPLLFLAFASISSIGLHPLGARW
IQEHYPTQPFQATYSYYGIANRFAFAIGYHVEHHDFPSVPWNKLAVLKAT
APEYYDTLFAYTSYSELLKDFIFERKWSLANRFEVEREMSEKASPTADAF
TKKEQ*
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mRNA from alignment at tig00000069_pilon:425923..426990-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5086.t1 ID=Ggra5086.t1|Name=Ggra5086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000069_pilon:425923..426990- (Gracilaria gracilis GNS1m male)
ATGGGGAAGGGAGGATCTTCCGAAGAGGTTCTTGTTCGAAGTAATCTTCT
TTCAACCGAAGATGCCGAGGCCATTGTTCATCGCAAGAGCGGCGCGAGAC
ATCCGCATGCTGATCGCCGCGCTGAGATTTTGAGCAAGCACCCCGAAGTC
AAGAATCTTTTCGGTACTTACCGTGGAACTGCCGTGTATTCTGTCGTGCT
CGTTTTGTTTCAGATTGCTCTTGCTGTGCTGGTCAGCGTCAACTTCCCCG
TATGGGTTGGTGTTCTACTGAGTTATTCAGTTGGTGCCGTGGTGGACCAT
GCATTGTGGGTTTTGATTCATGATGCCACTCACAACCTTGTCTTCAAGAG
CGTTGCGAAGAATCGAGTTGTGCTATTAATATGTAACATTCCCCATGTAT
TTCCATCCGCCATGATGTTTCGTTATTACCATATTCTTCATCACATTGAG
CTCAATCGCGCACACAAAGATCCTGACGTTCCGTTTGAATGGGAAGCCAA
ATTTATCGGAAACTCGCCGTTTAGAAAGTCCATCTGGCTTGCGTTTTTCT
TTATTGTTCAGGCCTTACGCACCGCCTTTTACACATATCGAATTCCGAAG
GGAACTGAGCTTGCATGGATGGCCTTCAATTGGCTTTTGAATGTTGCCGT
CCATGCCGTCATTGTATCGTACTATGGATGGGCTCCTCTGCTGTTCCTAG
CGTTTGCGTCCATTTCTAGTATTGGTTTGCATCCGTTGGGCGCTCGCTGG
ATTCAAGAACATTATCCTACACAACCTTTTCAGGCTACTTATTCCTATTA
TGGAATTGCTAATCGCTTTGCGTTTGCGATTGGCTATCATGTCGAACATC
ACGACTTCCCGTCTGTTCCTTGGAATAAGCTTGCTGTGCTTAAGGCTACC
GCGCCAGAGTACTATGATACTTTGTTTGCGTATACCAGCTACTCAGAACT
ACTCAAGGACTTCATCTTTGAAAGAAAATGGAGTTTGGCTAATCGTTTCG
AGGTGGAACGCGAAATGTCAGAGAAGGCTTCTCCAACAGCTGATGCCTTC
ACAAAGAAAGAACAATAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:425923..426990-

>Ggra5086.t1 ID=Ggra5086.t1|Name=Ggra5086.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000069_pilon:425923..426990- (Gracilaria gracilis GNS1m male)
ATGGGGAAGGGAGGATCTTCCGAAGAGGTTCTTGTTCGAAGTAATCTTCT
TTCAACCGAAGATGCCGAGGCCATTGTTCATCGCAAGAGCGGCGCGAGAC
ATCCGCATGCTGATCGCCGCGCTGAGATTTTGAGCAAGCACCCCGAAGTC
AAGAATCTTTTCGGTACTTACCGTGGAACTGCCGTGTATTCTGTCGTGCT
CGTTTTGTTTCAGATTGCTCTTGCTGTGCTGGTCAGCGTCAACTTCCCCG
TATGGGTTGGTGTTCTACTGAGTTATTCAGTTGGTGCCGTGGTGGACCAT
GCATTGTGGGTTTTGATTCATGATGCCACTCACAACCTTGTCTTCAAGAG
CGTTGCGAAGAATCGAGTTGTGCTATTAATATGTAACATTCCCCATGTAT
TTCCATCCGCCATGATGTTTCGTTATTACCATATTCTTCATCACATTGAG
CTCAATCGCGCACACAAAGATCCTGACGTTCCGTTTGAATGGGAAGCCAA
ATTTATCGGAAACTCGCCGTTTAGAAAGTCCATCTGGCTTGCGTTTTTCT
TTATTGTTCAGGCCTTACGCACCGCCTTTTACACATATCGAATTCCGAAG
GGAACTGAGCTTGCATGGATGGCCTTCAATTGGCTTTTGAATGTTGCCGT
CCATGCCGTCATTGTATCGTACTATGGATGGGCTCCTCTGCTGTTCCTAG
CGTTTGCGTCCATTTCTAGTATTGGTTTGCATCCGTTGGGCGCTCGCTGG
ATTCAAGAACATTATCCTACACAACCTTTTCAGGCTACTTATTCCTATTA
TGGAATTGCTAATCGCTTTGCGTTTGCGATTGGCTATCATGTCGAACATC
ACGACTTCCCGTCTGTTCCTTGGAATAAGCTTGCTGTGCTTAAGGCTACC
GCGCCAGAGTACTATGATACTTTGTTTGCGTATACCAGCTACTCAGAACT
ACTCAAGGACTTCATCTTTGAAAGAAAATGGAGTTTGGCTAATCGTTTCG
AGGTGGAACGCGAAATGTCAGAGAAGGCTTCTCCAACAGCTGATGCCTTC
ACAAAGAAAGAACAATAG
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