Ggra5084.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5084.t1
Unique NameGgra5084.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:419265..420257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707660.1
PFAMsTPR_8
Max annot lvl2759|Eukaryota
Evalue1.98e-61
EggNOG OGs2CYTM@1|root,2S4PU@2759|Eukaryota
DescriptionTetratricopeptide repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5084Ggra5084Gracilaria gracilis GNS1m malegenetig00000069_pilon 419265..420257 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5084.t1.start1Ggra5084.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 419265..419267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5084.t1.CDS1Ggra5084.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 419265..420257 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5084.t1.exon1Ggra5084.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 419265..420257 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5084.t1.stop1Ggra5084.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 420255..420257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5084.t1Ggra5084.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 419265..420257 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5084.t1 ID=Ggra5084.t1|Name=Ggra5084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MACCRCEKVAFCVPTALPGRRARCSLSPVTQASYAPRCSLRLGRSIAAAA
LLLTLNASPMVAHVRAQEEMVAEQQQEHTERELRDMSRRNTRVTGEKSQL
FSAARRAAAAGDLEGALGMYDRLVREAPTFAPAHSNRANVLVTRGKFSEA
ERDYDDALKLAPLDGDAWVLHVNRGATRLALGRAEEALVDLNDAYRLRGD
DPTVLSNRASVYEVLGKWDNAIRDYQKALKSNDVQPFWVRYALVLFQRNK
SFEALSILKRVAAKFPEVSDVHAALALVYYDRGDIAAAETEWSAVDRPRL
FENQSFLNEERKWPPRAIKTLDNFRHLNPQ*
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spliced messenger RNA

>Ggra5084.t1 ID=Ggra5084.t1|Name=Ggra5084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000069_pilon:419265..420257+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTGTTGTCGCTGCGAAAAAGTGGCGTTCTGCGTGCCGACTGCACT
GCCTGGGAGACGTGCTCGCTGCTCATTGTCGCCCGTGACGCAGGCTTCAT
ATGCGCCGCGATGTTCCCTACGGTTGGGACGCTCCATTGCGGCGGCCGCA
CTGTTGCTGACGTTGAATGCTTCTCCAATGGTGGCGCACGTGCGCGCGCA
GGAGGAGATGGTGGCGGAACAGCAACAGGAGCATACAGAGCGAGAATTGC
GCGATATGTCTCGGCGAAATACCCGTGTGACTGGGGAGAAATCCCAGTTG
TTTTCAGCAGCGAGACGAGCGGCAGCGGCGGGTGACCTGGAAGGGGCCTT
GGGGATGTATGACAGGCTTGTTAGAGAAGCGCCAACGTTCGCACCTGCTC
ATTCAAATCGCGCGAACGTTTTAGTAACTAGGGGAAAGTTTTCGGAGGCG
GAACGCGATTACGATGACGCTTTGAAACTAGCGCCGCTGGACGGTGACGC
ATGGGTTCTCCACGTAAATCGCGGTGCGACGCGTTTGGCTTTAGGGCGCG
CTGAGGAAGCTCTGGTAGATTTGAATGATGCGTATCGCCTTCGCGGGGAT
GACCCGACTGTCTTGTCGAATCGTGCTAGCGTGTATGAAGTGTTGGGCAA
ATGGGACAATGCGATTCGTGATTATCAGAAAGCGTTGAAGTCGAATGATG
TGCAACCGTTTTGGGTTCGGTATGCATTGGTTTTGTTTCAAAGGAACAAG
AGTTTTGAAGCGCTTTCCATTCTAAAGCGTGTTGCAGCTAAGTTTCCGGA
AGTGAGTGATGTACATGCTGCATTGGCGCTTGTCTATTATGATCGGGGGG
ACATTGCTGCAGCTGAGACAGAATGGAGCGCCGTGGATCGACCAAGACTA
TTTGAAAACCAATCATTCCTTAATGAGGAGCGAAAGTGGCCTCCGCGCGC
CATCAAGACCTTGGATAACTTTCGGCACCTTAATCCCCAATGA
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protein sequence of Ggra5084.t1

>Ggra5084.t1 ID=Ggra5084.t1|Name=Ggra5084.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MACCRCEKVAFCVPTALPGRRARCSLSPVTQASYAPRCSLRLGRSIAAAA
LLLTLNASPMVAHVRAQEEMVAEQQQEHTERELRDMSRRNTRVTGEKSQL
FSAARRAAAAGDLEGALGMYDRLVREAPTFAPAHSNRANVLVTRGKFSEA
ERDYDDALKLAPLDGDAWVLHVNRGATRLALGRAEEALVDLNDAYRLRGD
DPTVLSNRASVYEVLGKWDNAIRDYQKALKSNDVQPFWVRYALVLFQRNK
SFEALSILKRVAAKFPEVSDVHAALALVYYDRGDIAAAETEWSAVDRPRL
FENQSFLNEERKWPPRAIKTLDNFRHLNPQ*
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mRNA from alignment at tig00000069_pilon:419265..420257+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5084.t1 ID=Ggra5084.t1|Name=Ggra5084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000069_pilon:419265..420257+ (Gracilaria gracilis GNS1m male)
ATGGCCTGTTGTCGCTGCGAAAAAGTGGCGTTCTGCGTGCCGACTGCACT
GCCTGGGAGACGTGCTCGCTGCTCATTGTCGCCCGTGACGCAGGCTTCAT
ATGCGCCGCGATGTTCCCTACGGTTGGGACGCTCCATTGCGGCGGCCGCA
CTGTTGCTGACGTTGAATGCTTCTCCAATGGTGGCGCACGTGCGCGCGCA
GGAGGAGATGGTGGCGGAACAGCAACAGGAGCATACAGAGCGAGAATTGC
GCGATATGTCTCGGCGAAATACCCGTGTGACTGGGGAGAAATCCCAGTTG
TTTTCAGCAGCGAGACGAGCGGCAGCGGCGGGTGACCTGGAAGGGGCCTT
GGGGATGTATGACAGGCTTGTTAGAGAAGCGCCAACGTTCGCACCTGCTC
ATTCAAATCGCGCGAACGTTTTAGTAACTAGGGGAAAGTTTTCGGAGGCG
GAACGCGATTACGATGACGCTTTGAAACTAGCGCCGCTGGACGGTGACGC
ATGGGTTCTCCACGTAAATCGCGGTGCGACGCGTTTGGCTTTAGGGCGCG
CTGAGGAAGCTCTGGTAGATTTGAATGATGCGTATCGCCTTCGCGGGGAT
GACCCGACTGTCTTGTCGAATCGTGCTAGCGTGTATGAAGTGTTGGGCAA
ATGGGACAATGCGATTCGTGATTATCAGAAAGCGTTGAAGTCGAATGATG
TGCAACCGTTTTGGGTTCGGTATGCATTGGTTTTGTTTCAAAGGAACAAG
AGTTTTGAAGCGCTTTCCATTCTAAAGCGTGTTGCAGCTAAGTTTCCGGA
AGTGAGTGATGTACATGCTGCATTGGCGCTTGTCTATTATGATCGGGGGG
ACATTGCTGCAGCTGAGACAGAATGGAGCGCCGTGGATCGACCAAGACTA
TTTGAAAACCAATCATTCCTTAATGAGGAGCGAAAGTGGCCTCCGCGCGC
CATCAAGACCTTGGATAACTTTCGGCACCTTAATCCCCAATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:419265..420257+

>Ggra5084.t1 ID=Ggra5084.t1|Name=Ggra5084.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000069_pilon:419265..420257+ (Gracilaria gracilis GNS1m male)
ATGGCCTGTTGTCGCTGCGAAAAAGTGGCGTTCTGCGTGCCGACTGCACT
GCCTGGGAGACGTGCTCGCTGCTCATTGTCGCCCGTGACGCAGGCTTCAT
ATGCGCCGCGATGTTCCCTACGGTTGGGACGCTCCATTGCGGCGGCCGCA
CTGTTGCTGACGTTGAATGCTTCTCCAATGGTGGCGCACGTGCGCGCGCA
GGAGGAGATGGTGGCGGAACAGCAACAGGAGCATACAGAGCGAGAATTGC
GCGATATGTCTCGGCGAAATACCCGTGTGACTGGGGAGAAATCCCAGTTG
TTTTCAGCAGCGAGACGAGCGGCAGCGGCGGGTGACCTGGAAGGGGCCTT
GGGGATGTATGACAGGCTTGTTAGAGAAGCGCCAACGTTCGCACCTGCTC
ATTCAAATCGCGCGAACGTTTTAGTAACTAGGGGAAAGTTTTCGGAGGCG
GAACGCGATTACGATGACGCTTTGAAACTAGCGCCGCTGGACGGTGACGC
ATGGGTTCTCCACGTAAATCGCGGTGCGACGCGTTTGGCTTTAGGGCGCG
CTGAGGAAGCTCTGGTAGATTTGAATGATGCGTATCGCCTTCGCGGGGAT
GACCCGACTGTCTTGTCGAATCGTGCTAGCGTGTATGAAGTGTTGGGCAA
ATGGGACAATGCGATTCGTGATTATCAGAAAGCGTTGAAGTCGAATGATG
TGCAACCGTTTTGGGTTCGGTATGCATTGGTTTTGTTTCAAAGGAACAAG
AGTTTTGAAGCGCTTTCCATTCTAAAGCGTGTTGCAGCTAAGTTTCCGGA
AGTGAGTGATGTACATGCTGCATTGGCGCTTGTCTATTATGATCGGGGGG
ACATTGCTGCAGCTGAGACAGAATGGAGCGCCGTGGATCGACCAAGACTA
TTTGAAAACCAATCATTCCTTAATGAGGAGCGAAAGTGGCCTCCGCGCGC
CATCAAGACCTTGGATAACTTTCGGCACCTTAATCCCCAATGA
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