Ggra5082.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5082.t1
Unique Name	Ggra5082.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:415717..416919 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5082	Ggra5082	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 415717..416919 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5082.t1.start1	Ggra5082.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 415717..415719 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5082.t1.CDS1	Ggra5082.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 415717..416919 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5082.t1.exon1	Ggra5082.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 415717..416919 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5082.t1.stop1	Ggra5082.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 416917..416919 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5082.t1	Ggra5082.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 415717..416919 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:415717..416919+
coding sequence from alignment at tig00000069_pilon:415717..416919+

mRNA sequence

>Ggra5082.t1 ID=Ggra5082.t1|Name=Ggra5082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MTGPGASRQPSSTSSAVELASSAQSAHDSIAPVLPVHSLQSLRALLDELS
ILSMKTVPFPSLHDDLQRASLRVTHLSAETLNTLRLFCSSAVKERYDINV
VHDLLRDGLNPAAKSLLTASNTQHKRLAHVSNTLAMEFEQAANALTECLS
RATHARAQQSSRHQERQTAVATKFGELTSTRRRAQGALLAFEEAEMRHAD
AEQRENVARKRVVAMQAAHVAAVVGGFVSARSTPFVIGAGSAAALASTFE
SDVMRAREERAVHLRQRNDARDRRSQLEGSVATLVTELRECRKEAVLEST
VLDSLVDCATLLRELAGVMLQAEAFWKGVSTGLQDGLLELVSAAEGREFD
DGMRQRLVQVEKFWDAVGSLCENAMKGVDNGLNSNESIQGRQVHRIEWDL
*

spliced messenger RNA

>Ggra5082.t1 ID=Ggra5082.t1|Name=Ggra5082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000069_pilon:415717..416919+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGACCTGGCGCTTCCCGCCAGCCTTCGTCTACCAGCTCAGCTGT
CGAACTTGCATCATCGGCTCAGAGTGCTCACGACTCCATCGCGCCTGTAC
TTCCCGTACATTCGCTGCAGAGCTTGCGTGCCCTGCTGGATGAACTGTCC
ATTCTGTCAATGAAAACGGTGCCCTTTCCGTCGCTGCATGATGATCTACA
ACGCGCCAGTCTCCGTGTGACGCATCTGTCGGCCGAGACGTTGAATACCT
TACGCTTGTTTTGTTCTTCTGCCGTTAAGGAACGCTATGATATTAACGTC
GTACATGACCTTCTGAGGGACGGTTTAAATCCTGCGGCAAAGTCTCTCCT
CACCGCCTCCAACACCCAGCATAAGAGACTGGCACATGTGTCTAACACAC
TTGCCATGGAATTCGAACAAGCTGCAAACGCGTTGACAGAATGCCTTAGT
CGAGCGACACATGCACGCGCCCAACAGAGCTCCCGTCACCAAGAGCGACA
GACTGCGGTGGCTACCAAATTCGGCGAACTCACTAGTACCAGACGAAGAG
CACAAGGTGCGCTGCTCGCATTTGAAGAAGCTGAAATGCGCCACGCAGAC
GCTGAGCAGCGCGAGAACGTTGCGCGCAAGCGCGTGGTGGCGATGCAGGC
TGCGCATGTTGCAGCTGTCGTGGGCGGTTTCGTGAGTGCCAGGTCGACGC
CGTTTGTGATTGGTGCTGGCTCGGCTGCTGCGTTGGCTTCTACGTTTGAA
AGTGATGTCATGCGTGCTCGTGAGGAGCGTGCTGTGCATCTCAGACAACG
AAATGACGCTCGTGATCGTCGTTCACAGTTGGAAGGCAGTGTAGCTACAC
TCGTCACTGAATTGCGAGAGTGCAGGAAAGAAGCTGTTTTGGAAAGCACT
GTTTTGGATTCCCTTGTGGACTGTGCTACCTTACTGAGAGAGCTGGCGGG
TGTCATGCTGCAAGCAGAGGCTTTTTGGAAAGGAGTATCCACTGGGCTAC
AGGATGGTCTGTTGGAACTGGTTTCGGCGGCGGAGGGACGCGAATTTGAC
GATGGTATGAGACAAAGATTGGTGCAGGTTGAGAAGTTCTGGGACGCTGT
GGGTTCACTTTGTGAGAACGCTATGAAAGGAGTGGATAACGGACTGAACA
GTAACGAGAGCATACAAGGACGTCAGGTTCATAGGATTGAATGGGATTTA
TGA

protein sequence of Ggra5082.t1

>Ggra5082.t1 ID=Ggra5082.t1|Name=Ggra5082.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MTGPGASRQPSSTSSAVELASSAQSAHDSIAPVLPVHSLQSLRALLDELS
ILSMKTVPFPSLHDDLQRASLRVTHLSAETLNTLRLFCSSAVKERYDINV
VHDLLRDGLNPAAKSLLTASNTQHKRLAHVSNTLAMEFEQAANALTECLS
RATHARAQQSSRHQERQTAVATKFGELTSTRRRAQGALLAFEEAEMRHAD
AEQRENVARKRVVAMQAAHVAAVVGGFVSARSTPFVIGAGSAAALASTFE
SDVMRAREERAVHLRQRNDARDRRSQLEGSVATLVTELRECRKEAVLEST
VLDSLVDCATLLRELAGVMLQAEAFWKGVSTGLQDGLLELVSAAEGREFD
DGMRQRLVQVEKFWDAVGSLCENAMKGVDNGLNSNESIQGRQVHRIEWDL
*

mRNA from alignment at tig00000069_pilon:415717..416919+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5082.t1 ID=Ggra5082.t1|Name=Ggra5082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000069_pilon:415717..416919+ (Gracilaria gracilis GNS1m male)
ATGACCGGACCTGGCGCTTCCCGCCAGCCTTCGTCTACCAGCTCAGCTGT
CGAACTTGCATCATCGGCTCAGAGTGCTCACGACTCCATCGCGCCTGTAC
TTCCCGTACATTCGCTGCAGAGCTTGCGTGCCCTGCTGGATGAACTGTCC
ATTCTGTCAATGAAAACGGTGCCCTTTCCGTCGCTGCATGATGATCTACA
ACGCGCCAGTCTCCGTGTGACGCATCTGTCGGCCGAGACGTTGAATACCT
TACGCTTGTTTTGTTCTTCTGCCGTTAAGGAACGCTATGATATTAACGTC
GTACATGACCTTCTGAGGGACGGTTTAAATCCTGCGGCAAAGTCTCTCCT
CACCGCCTCCAACACCCAGCATAAGAGACTGGCACATGTGTCTAACACAC
TTGCCATGGAATTCGAACAAGCTGCAAACGCGTTGACAGAATGCCTTAGT
CGAGCGACACATGCACGCGCCCAACAGAGCTCCCGTCACCAAGAGCGACA
GACTGCGGTGGCTACCAAATTCGGCGAACTCACTAGTACCAGACGAAGAG
CACAAGGTGCGCTGCTCGCATTTGAAGAAGCTGAAATGCGCCACGCAGAC
GCTGAGCAGCGCGAGAACGTTGCGCGCAAGCGCGTGGTGGCGATGCAGGC
TGCGCATGTTGCAGCTGTCGTGGGCGGTTTCGTGAGTGCCAGGTCGACGC
CGTTTGTGATTGGTGCTGGCTCGGCTGCTGCGTTGGCTTCTACGTTTGAA
AGTGATGTCATGCGTGCTCGTGAGGAGCGTGCTGTGCATCTCAGACAACG
AAATGACGCTCGTGATCGTCGTTCACAGTTGGAAGGCAGTGTAGCTACAC
TCGTCACTGAATTGCGAGAGTGCAGGAAAGAAGCTGTTTTGGAAAGCACT
GTTTTGGATTCCCTTGTGGACTGTGCTACCTTACTGAGAGAGCTGGCGGG
TGTCATGCTGCAAGCAGAGGCTTTTTGGAAAGGAGTATCCACTGGGCTAC
AGGATGGTCTGTTGGAACTGGTTTCGGCGGCGGAGGGACGCGAATTTGAC
GATGGTATGAGACAAAGATTGGTGCAGGTTGAGAAGTTCTGGGACGCTGT
GGGTTCACTTTGTGAGAACGCTATGAAAGGAGTGGATAACGGACTGAACA
GTAACGAGAGCATACAAGGACGTCAGGTTCATAGGATTGAATGGGATTTA
TGA

Coding sequence (CDS) from alignment at tig00000069_pilon:415717..416919+

>Ggra5082.t1 ID=Ggra5082.t1|Name=Ggra5082.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000069_pilon:415717..416919+ (Gracilaria gracilis GNS1m male)
ATGACCGGACCTGGCGCTTCCCGCCAGCCTTCGTCTACCAGCTCAGCTGT
CGAACTTGCATCATCGGCTCAGAGTGCTCACGACTCCATCGCGCCTGTAC
TTCCCGTACATTCGCTGCAGAGCTTGCGTGCCCTGCTGGATGAACTGTCC
ATTCTGTCAATGAAAACGGTGCCCTTTCCGTCGCTGCATGATGATCTACA
ACGCGCCAGTCTCCGTGTGACGCATCTGTCGGCCGAGACGTTGAATACCT
TACGCTTGTTTTGTTCTTCTGCCGTTAAGGAACGCTATGATATTAACGTC
GTACATGACCTTCTGAGGGACGGTTTAAATCCTGCGGCAAAGTCTCTCCT
CACCGCCTCCAACACCCAGCATAAGAGACTGGCACATGTGTCTAACACAC
TTGCCATGGAATTCGAACAAGCTGCAAACGCGTTGACAGAATGCCTTAGT
CGAGCGACACATGCACGCGCCCAACAGAGCTCCCGTCACCAAGAGCGACA
GACTGCGGTGGCTACCAAATTCGGCGAACTCACTAGTACCAGACGAAGAG
CACAAGGTGCGCTGCTCGCATTTGAAGAAGCTGAAATGCGCCACGCAGAC
GCTGAGCAGCGCGAGAACGTTGCGCGCAAGCGCGTGGTGGCGATGCAGGC
TGCGCATGTTGCAGCTGTCGTGGGCGGTTTCGTGAGTGCCAGGTCGACGC
CGTTTGTGATTGGTGCTGGCTCGGCTGCTGCGTTGGCTTCTACGTTTGAA
AGTGATGTCATGCGTGCTCGTGAGGAGCGTGCTGTGCATCTCAGACAACG
AAATGACGCTCGTGATCGTCGTTCACAGTTGGAAGGCAGTGTAGCTACAC
TCGTCACTGAATTGCGAGAGTGCAGGAAAGAAGCTGTTTTGGAAAGCACT
GTTTTGGATTCCCTTGTGGACTGTGCTACCTTACTGAGAGAGCTGGCGGG
TGTCATGCTGCAAGCAGAGGCTTTTTGGAAAGGAGTATCCACTGGGCTAC
AGGATGGTCTGTTGGAACTGGTTTCGGCGGCGGAGGGACGCGAATTTGAC
GATGGTATGAGACAAAGATTGGTGCAGGTTGAGAAGTTCTGGGACGCTGT
GGGTTCACTTTGTGAGAACGCTATGAAAGGAGTGGATAACGGACTGAACA
GTAACGAGAGCATACAAGGACGTCAGGTTCATAGGATTGAATGGGATTTA
TGA