Ggra5081.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5081.t1
Unique Name	Ggra5081.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:413765..415354 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000016871
PFAMs	SART-1
Max annot lvl	121069\|Pythiales
Evalue	9.1e-12
EggNOG OGs	KOG2217@1\|root,KOG2217@2759\|Eukaryota,1MASX@121069\|Pythiales
Description	U4 U6.U5 tri-snRNP-associated protein. Source PGD
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5081	Ggra5081	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 413765..415354 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5081.t1.stop1	Ggra5081.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 413765..413767 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5081.t1.CDS1	Ggra5081.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 413765..415354 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5081.t1.exon1	Ggra5081.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 413765..415354 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5081.t1.start1	Ggra5081.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 415352..415354 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5081.t1	Ggra5081.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 413765..415354 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:413765..415354-
coding sequence from alignment at tig00000069_pilon:413765..415354-

mRNA sequence

>Ggra5081.t1 ID=Ggra5081.t1|Name=Ggra5081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MDASFKPKLSKNKAGEVVFSTEDTNRVRLALGLRPLSTSAPSAPNRPAIQ
TITKNGEISCSVAETNKLRVALGLRPLRPRDSSQPSVSLPTRQVSAEDGH
ALERRLQKARAARAARHVMAPLSISEEVSQLETKKRAPPSARDHSGPTKK
RKRESRDAVQLPSRLEEELVPGQQTILTLRDKHVLEDNNEAQLLQRTDEG
GKYDHDSDENSEDSDIDGMNYDGTDTVQFQKEPKKRKDVASHNIERRDML
VDEDYDKQPAFLKRKRNKRKRKRDIRAEPVTKGHLKVLRMKDEENNADDS
DSDDEYYEKMMTARRKSKREDRDRIVRQILERVDHSDSDDEEKGAVVFSE
MDQFSVQAPAAEKGHDERSVAIANTTAKPLEDTVKHSSEQPGREFEHQTP
TKKTADTPTNAIGIPESAPTAEEVNPSSETNGMTGLAATLKRLRQTGALH
RKPEQIGRARDERYSDSEDESVGDGKPRVKLHYTDEFGNKLTPKEAYRLL
SHKFHGNAPKQNKREKRLQRMLEEKRQAT*

spliced messenger RNA

>Ggra5081.t1 ID=Ggra5081.t1|Name=Ggra5081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000069_pilon:413765..415354- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTTCATTTAAACCCAAACTTTCCAAGAACAAAGCCGGTGAGGT
GGTGTTCTCTACGGAAGATACCAATCGAGTCAGGCTAGCGCTTGGTCTTC
GCCCCCTCTCCACTTCGGCACCCTCAGCACCCAACCGCCCCGCCATACAA
ACCATCACCAAGAATGGAGAGATATCCTGCTCAGTCGCTGAAACAAATAA
GCTGCGTGTCGCCCTTGGTTTGCGCCCGCTTCGCCCACGAGACTCCTCAC
AGCCCTCTGTGTCTCTTCCCACCCGCCAGGTGAGTGCCGAAGATGGACAT
GCCCTTGAACGTCGTCTGCAGAAAGCTCGAGCGGCGCGTGCGGCACGTCA
TGTAATGGCCCCGCTTTCAATTTCTGAAGAAGTTTCTCAGCTCGAAACCA
AAAAACGAGCACCTCCTAGCGCAAGAGATCATTCGGGTCCTACCAAGAAA
CGCAAGCGCGAATCTCGTGATGCAGTTCAGCTCCCGTCGCGCTTGGAGGA
GGAGCTTGTGCCTGGACAACAGACAATTCTTACATTGCGAGATAAGCATG
TTCTCGAAGATAATAATGAAGCACAACTTCTTCAACGAACGGATGAAGGA
GGTAAATACGATCATGACTCAGACGAAAATAGCGAGGACAGCGATATTGA
TGGTATGAACTACGATGGTACTGACACTGTACAGTTCCAGAAAGAGCCAA
AGAAGCGGAAGGATGTGGCTTCTCACAACATTGAGCGCAGAGACATGCTC
GTAGATGAAGACTATGACAAACAACCTGCATTCTTGAAAAGAAAACGAAA
CAAGCGAAAGCGGAAACGCGATATAAGAGCTGAACCAGTCACAAAGGGAC
ACCTAAAAGTATTGAGGATGAAGGACGAAGAGAATAATGCAGATGATTCT
GATAGCGATGACGAGTATTACGAGAAAATGATGACTGCGAGGAGAAAATC
AAAGCGAGAAGATCGCGACAGAATTGTGAGACAGATTCTTGAACGAGTCG
ATCATTCCGACAGCGACGACGAAGAGAAGGGCGCGGTTGTCTTTAGTGAG
ATGGATCAGTTTTCCGTACAAGCTCCCGCGGCTGAAAAGGGCCATGACGA
GCGTTCAGTCGCAATAGCAAACACAACAGCTAAACCCCTTGAGGATACAG
TCAAACATTCCTCGGAGCAACCAGGGCGTGAATTCGAACATCAAACCCCA
ACTAAAAAAACAGCCGACACTCCAACAAACGCAATCGGCATTCCTGAAAG
CGCTCCCACCGCAGAAGAAGTGAATCCCTCATCTGAAACAAACGGTATGA
CTGGGTTGGCCGCGACTTTAAAGCGTTTGCGACAAACTGGTGCGTTGCAT
AGAAAACCAGAACAAATCGGAAGAGCTAGGGATGAGCGCTACAGTGACAG
TGAGGATGAAAGCGTGGGAGATGGGAAACCAAGGGTGAAACTTCACTACA
CAGATGAGTTTGGAAACAAGCTTACCCCAAAAGAAGCCTACCGCCTCTTG
AGTCACAAGTTTCATGGTAACGCTCCGAAACAGAACAAGAGAGAGAAGAG
ACTTCAAAGAATGCTTGAAGAGAAGCGCCAGGCGACTTAA

protein sequence of Ggra5081.t1

>Ggra5081.t1 ID=Ggra5081.t1|Name=Ggra5081.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MDASFKPKLSKNKAGEVVFSTEDTNRVRLALGLRPLSTSAPSAPNRPAIQ
TITKNGEISCSVAETNKLRVALGLRPLRPRDSSQPSVSLPTRQVSAEDGH
ALERRLQKARAARAARHVMAPLSISEEVSQLETKKRAPPSARDHSGPTKK
RKRESRDAVQLPSRLEEELVPGQQTILTLRDKHVLEDNNEAQLLQRTDEG
GKYDHDSDENSEDSDIDGMNYDGTDTVQFQKEPKKRKDVASHNIERRDML
VDEDYDKQPAFLKRKRNKRKRKRDIRAEPVTKGHLKVLRMKDEENNADDS
DSDDEYYEKMMTARRKSKREDRDRIVRQILERVDHSDSDDEEKGAVVFSE
MDQFSVQAPAAEKGHDERSVAIANTTAKPLEDTVKHSSEQPGREFEHQTP
TKKTADTPTNAIGIPESAPTAEEVNPSSETNGMTGLAATLKRLRQTGALH
RKPEQIGRARDERYSDSEDESVGDGKPRVKLHYTDEFGNKLTPKEAYRLL
SHKFHGNAPKQNKREKRLQRMLEEKRQAT*

mRNA from alignment at tig00000069_pilon:413765..415354-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5081.t1 ID=Ggra5081.t1|Name=Ggra5081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000069_pilon:413765..415354- (Gracilaria gracilis GNS1m male)
ATGGACGCTTCATTTAAACCCAAACTTTCCAAGAACAAAGCCGGTGAGGT
GGTGTTCTCTACGGAAGATACCAATCGAGTCAGGCTAGCGCTTGGTCTTC
GCCCCCTCTCCACTTCGGCACCCTCAGCACCCAACCGCCCCGCCATACAA
ACCATCACCAAGAATGGAGAGATATCCTGCTCAGTCGCTGAAACAAATAA
GCTGCGTGTCGCCCTTGGTTTGCGCCCGCTTCGCCCACGAGACTCCTCAC
AGCCCTCTGTGTCTCTTCCCACCCGCCAGGTGAGTGCCGAAGATGGACAT
GCCCTTGAACGTCGTCTGCAGAAAGCTCGAGCGGCGCGTGCGGCACGTCA
TGTAATGGCCCCGCTTTCAATTTCTGAAGAAGTTTCTCAGCTCGAAACCA
AAAAACGAGCACCTCCTAGCGCAAGAGATCATTCGGGTCCTACCAAGAAA
CGCAAGCGCGAATCTCGTGATGCAGTTCAGCTCCCGTCGCGCTTGGAGGA
GGAGCTTGTGCCTGGACAACAGACAATTCTTACATTGCGAGATAAGCATG
TTCTCGAAGATAATAATGAAGCACAACTTCTTCAACGAACGGATGAAGGA
GGTAAATACGATCATGACTCAGACGAAAATAGCGAGGACAGCGATATTGA
TGGTATGAACTACGATGGTACTGACACTGTACAGTTCCAGAAAGAGCCAA
AGAAGCGGAAGGATGTGGCTTCTCACAACATTGAGCGCAGAGACATGCTC
GTAGATGAAGACTATGACAAACAACCTGCATTCTTGAAAAGAAAACGAAA
CAAGCGAAAGCGGAAACGCGATATAAGAGCTGAACCAGTCACAAAGGGAC
ACCTAAAAGTATTGAGGATGAAGGACGAAGAGAATAATGCAGATGATTCT
GATAGCGATGACGAGTATTACGAGAAAATGATGACTGCGAGGAGAAAATC
AAAGCGAGAAGATCGCGACAGAATTGTGAGACAGATTCTTGAACGAGTCG
ATCATTCCGACAGCGACGACGAAGAGAAGGGCGCGGTTGTCTTTAGTGAG
ATGGATCAGTTTTCCGTACAAGCTCCCGCGGCTGAAAAGGGCCATGACGA
GCGTTCAGTCGCAATAGCAAACACAACAGCTAAACCCCTTGAGGATACAG
TCAAACATTCCTCGGAGCAACCAGGGCGTGAATTCGAACATCAAACCCCA
ACTAAAAAAACAGCCGACACTCCAACAAACGCAATCGGCATTCCTGAAAG
CGCTCCCACCGCAGAAGAAGTGAATCCCTCATCTGAAACAAACGGTATGA
CTGGGTTGGCCGCGACTTTAAAGCGTTTGCGACAAACTGGTGCGTTGCAT
AGAAAACCAGAACAAATCGGAAGAGCTAGGGATGAGCGCTACAGTGACAG
TGAGGATGAAAGCGTGGGAGATGGGAAACCAAGGGTGAAACTTCACTACA
CAGATGAGTTTGGAAACAAGCTTACCCCAAAAGAAGCCTACCGCCTCTTG
AGTCACAAGTTTCATGGTAACGCTCCGAAACAGAACAAGAGAGAGAAGAG
ACTTCAAAGAATGCTTGAAGAGAAGCGCCAGGCGACTTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:413765..415354-

>Ggra5081.t1 ID=Ggra5081.t1|Name=Ggra5081.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000069_pilon:413765..415354- (Gracilaria gracilis GNS1m male)
ATGGACGCTTCATTTAAACCCAAACTTTCCAAGAACAAAGCCGGTGAGGT
GGTGTTCTCTACGGAAGATACCAATCGAGTCAGGCTAGCGCTTGGTCTTC
GCCCCCTCTCCACTTCGGCACCCTCAGCACCCAACCGCCCCGCCATACAA
ACCATCACCAAGAATGGAGAGATATCCTGCTCAGTCGCTGAAACAAATAA
GCTGCGTGTCGCCCTTGGTTTGCGCCCGCTTCGCCCACGAGACTCCTCAC
AGCCCTCTGTGTCTCTTCCCACCCGCCAGGTGAGTGCCGAAGATGGACAT
GCCCTTGAACGTCGTCTGCAGAAAGCTCGAGCGGCGCGTGCGGCACGTCA
TGTAATGGCCCCGCTTTCAATTTCTGAAGAAGTTTCTCAGCTCGAAACCA
AAAAACGAGCACCTCCTAGCGCAAGAGATCATTCGGGTCCTACCAAGAAA
CGCAAGCGCGAATCTCGTGATGCAGTTCAGCTCCCGTCGCGCTTGGAGGA
GGAGCTTGTGCCTGGACAACAGACAATTCTTACATTGCGAGATAAGCATG
TTCTCGAAGATAATAATGAAGCACAACTTCTTCAACGAACGGATGAAGGA
GGTAAATACGATCATGACTCAGACGAAAATAGCGAGGACAGCGATATTGA
TGGTATGAACTACGATGGTACTGACACTGTACAGTTCCAGAAAGAGCCAA
AGAAGCGGAAGGATGTGGCTTCTCACAACATTGAGCGCAGAGACATGCTC
GTAGATGAAGACTATGACAAACAACCTGCATTCTTGAAAAGAAAACGAAA
CAAGCGAAAGCGGAAACGCGATATAAGAGCTGAACCAGTCACAAAGGGAC
ACCTAAAAGTATTGAGGATGAAGGACGAAGAGAATAATGCAGATGATTCT
GATAGCGATGACGAGTATTACGAGAAAATGATGACTGCGAGGAGAAAATC
AAAGCGAGAAGATCGCGACAGAATTGTGAGACAGATTCTTGAACGAGTCG
ATCATTCCGACAGCGACGACGAAGAGAAGGGCGCGGTTGTCTTTAGTGAG
ATGGATCAGTTTTCCGTACAAGCTCCCGCGGCTGAAAAGGGCCATGACGA
GCGTTCAGTCGCAATAGCAAACACAACAGCTAAACCCCTTGAGGATACAG
TCAAACATTCCTCGGAGCAACCAGGGCGTGAATTCGAACATCAAACCCCA
ACTAAAAAAACAGCCGACACTCCAACAAACGCAATCGGCATTCCTGAAAG
CGCTCCCACCGCAGAAGAAGTGAATCCCTCATCTGAAACAAACGGTATGA
CTGGGTTGGCCGCGACTTTAAAGCGTTTGCGACAAACTGGTGCGTTGCAT
AGAAAACCAGAACAAATCGGAAGAGCTAGGGATGAGCGCTACAGTGACAG
TGAGGATGAAAGCGTGGGAGATGGGAAACCAAGGGTGAAACTTCACTACA
CAGATGAGTTTGGAAACAAGCTTACCCCAAAAGAAGCCTACCGCCTCTTG
AGTCACAAGTTTCATGGTAACGCTCCGAAACAGAACAAGAGAGAGAAGAG
ACTTCAAAGAATGCTTGAAGAGAAGCGCCAGGCGACTTAA