Ggra508.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra508.t1
Unique NameGgra508.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000238_piloncontigtig00000238_pilon:52989..54016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog589865.DaAHT2_1105
Preferred nameilvC
PFAMsIlvC,IlvN
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00726,RC00836,RC00837,RC01726
KEGG koko:K00053
KEGG ReactionR03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Evalue3.42e-49
EggNOG OGsCOG0059@1|root,COG0059@2|Bacteria,1MV7M@1224|Proteobacteria,42MRS@68525|delta/epsilon subdivisions,2WJW8@28221|Deltaproteobacteria,2MIRN@213118|Desulfobacterales
EC1.1.1.86
DescriptionInvolved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra508Ggra508Gracilaria gracilis GNS1m malegenetig00000238_pilon 52989..54016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra508.t1Ggra508.t1Gracilaria gracilis GNS1m malepolypeptidetig00000238_pilon 52989..54016 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra508.t1.start1Ggra508.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000238_pilon 52989..52991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra508.t1.CDS1Ggra508.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000238_pilon 52989..53161 +
Ggra508.t1.CDS2Ggra508.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000238_pilon 53455..54016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra508.t1.exon1Ggra508.t1.exon1Gracilaria gracilis GNS1m maleexontig00000238_pilon 52989..53161 +
Ggra508.t1.exon2Ggra508.t1.exon2Gracilaria gracilis GNS1m maleexontig00000238_pilon 53455..54016 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra508.t1.intron1Ggra508.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000238_pilon 53162..53454 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra508.t1.stop1Ggra508.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000238_pilon 54014..54016 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra508.t1 ID=Ggra508.t1|Name=Ggra508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MSSRLSLCDCTISIRISMPHTAVAAARLARANRASAAVRHARSDRGLHRR
DRLPYVNATRSVRTTSAVFVVVEIATASLSALCLDGRDGRDDRAELRRAA
PPLAMHRVHSVIECYEDVECGNEIRSVIAAGNRAKRFPVISPIDGTRMWK
VGEIVRGKRPERTKDLIDPFFAGVYCATMMAQIDVLLEKGHVLSEIINES
VIECVDSLSPYMHARGLAYMVFHCPFTAATGSKKWPPRFDYNLS*
back to top

spliced messenger RNA

>Ggra508.t1 ID=Ggra508.t1|Name=Ggra508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000238_pilon:52989..54016+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCCGTCTCTCGCTCTGCGACTGCACCATCTCCATTCGCATCTC
CATGCCCCACACCGCCGTCGCCGCTGCCCGACTGGCCAGAGCAAATCGCG
CTTCAGCCGCGGTCCGCCACGCGCGATCAGACCGAGGCCTACATCGACGA
GACCGTCTTCCTTATGTTAACGCTACGCGCTCAGTGCGCACAACTAGCGC
CGTCTTCGTCGTGGTCGAAATTGCCACTGCATCTCTGTCCGCCCTCTGCC
TCGATGGCCGCGATGGCCGCGATGACCGCGCTGAACTTCGCCGCGCCGCT
CCCCCTCTCGCCATGCATCGCGTCCACTCTGTCATTGAATGTTACGAGGA
TGTGGAATGTGGAAATGAGATCCGATCTGTGATCGCTGCGGGAAATCGCG
CGAAGAGATTCCCTGTTATCTCGCCTATTGACGGTACCCGAATGTGGAAG
GTTGGCGAAATTGTGCGGGGCAAGCGTCCTGAGAGGACTAAAGACCTTAT
TGACCCATTCTTTGCCGGAGTGTATTGTGCCACAATGATGGCGCAAATTG
ATGTGCTGCTAGAGAAGGGACACGTTCTATCCGAGATCATCAATGAGTCT
GTCATTGAATGTGTCGACAGTCTTTCGCCGTACATGCATGCTAGAGGTTT
GGCATATATGGTCTTCCACTGCCCATTCACTGCTGCTACCGGAAGTAAGA
AGTGGCCTCCAAGATTCGACTACAACCTTTCATAG
back to top

protein sequence of Ggra508.t1

>Ggra508.t1 ID=Ggra508.t1|Name=Ggra508.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MSSRLSLCDCTISIRISMPHTAVAAARLARANRASAAVRHARSDRGLHRR
DRLPYVNATRSVRTTSAVFVVVEIATASLSALCLDGRDGRDDRAELRRAA
PPLAMHRVHSVIECYEDVECGNEIRSVIAAGNRAKRFPVISPIDGTRMWK
VGEIVRGKRPERTKDLIDPFFAGVYCATMMAQIDVLLEKGHVLSEIINES
VIECVDSLSPYMHARGLAYMVFHCPFTAATGSKKWPPRFDYNLS*
back to top

mRNA from alignment at tig00000238_pilon:52989..54016+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra508.t1 ID=Ggra508.t1|Name=Ggra508.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1028bp|location=Sequence derived from alignment at tig00000238_pilon:52989..54016+ (Gracilaria gracilis GNS1m male)
ATGTCCTCCCGTCTCTCGCTCTGCGACTGCACCATCTCCATTCGCATCTC
CATGCCCCACACCGCCGTCGCCGCTGCCCGACTGGCCAGAGCAAATCGCG
CTTCAGCCGCGGTCCGCCACGCGCGATCAGACCGAGGCCTACATCGACGA
GACCGTCTTCCTTATGTTAACGCGTAAGTCTACATTGGCtcgctgccaca
cgccgccagcaacgagaagccgtcgtgtagactgcccgtcatgcgcgaga
cgtcgtggctgccttccaaacacgacggTTCGCCCGTCGCGTGCAAGGGC
CTCTGCGTGCACGGCTGATGATCCAACGCGCGCGCGTCATCTGTCACAGA
GATACAAGGACGCGCTGCGCCACGCACAGAGCGTCAAGGCGCGGATCTGC
ATCAGCGTCATCAACGTGCTGTCCGCAATTTTTCTAACGAGGGGCCAACC
ACATCTGGGCGCATAGTACGCGCTCAGTGCGCACAACTAGCGCCGTCTTC
GTCGTGGTCGAAATTGCCACTGCATCTCTGTCCGCCCTCTGCCTCGATGG
CCGCGATGGCCGCGATGACCGCGCTGAACTTCGCCGCGCCGCTCCCCCTC
TCGCCATGCATCGCGTCCACTCTGTCATTGAATGTTACGAGGATGTGGAA
TGTGGAAATGAGATCCGATCTGTGATCGCTGCGGGAAATCGCGCGAAGAG
ATTCCCTGTTATCTCGCCTATTGACGGTACCCGAATGTGGAAGGTTGGCG
AAATTGTGCGGGGCAAGCGTCCTGAGAGGACTAAAGACCTTATTGACCCA
TTCTTTGCCGGAGTGTATTGTGCCACAATGATGGCGCAAATTGATGTGCT
GCTAGAGAAGGGACACGTTCTATCCGAGATCATCAATGAGTCTGTCATTG
AATGTGTCGACAGTCTTTCGCCGTACATGCATGCTAGAGGTTTGGCATAT
ATGGTCTTCCACTGCCCATTCACTGCTGCTACCGGAAGTAAGAAGTGGCC
TCCAAGATTCGACTACAACCTTTCATAG
back to top

Coding sequence (CDS) from alignment at tig00000238_pilon:52989..54016+

>Ggra508.t1 ID=Ggra508.t1|Name=Ggra508.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000238_pilon:52989..54016+ (Gracilaria gracilis GNS1m male)
ATGTCCTCCCGTCTCTCGCTCTGCGACTGCACCATCTCCATTCGCATCTC
CATGCCCCACACCGCCGTCGCCGCTGCCCGACTGGCCAGAGCAAATCGCG
CTTCAGCCGCGGTCCGCCACGCGCGATCAGACCGAGGCCTACATCGACGA
GACCGTCTTCCTTATGTTAACGCTACGCGCTCAGTGCGCACAACTAGCGC
CGTCTTCGTCGTGGTCGAAATTGCCACTGCATCTCTGTCCGCCCTCTGCC
TCGATGGCCGCGATGGCCGCGATGACCGCGCTGAACTTCGCCGCGCCGCT
CCCCCTCTCGCCATGCATCGCGTCCACTCTGTCATTGAATGTTACGAGGA
TGTGGAATGTGGAAATGAGATCCGATCTGTGATCGCTGCGGGAAATCGCG
CGAAGAGATTCCCTGTTATCTCGCCTATTGACGGTACCCGAATGTGGAAG
GTTGGCGAAATTGTGCGGGGCAAGCGTCCTGAGAGGACTAAAGACCTTAT
TGACCCATTCTTTGCCGGAGTGTATTGTGCCACAATGATGGCGCAAATTG
ATGTGCTGCTAGAGAAGGGACACGTTCTATCCGAGATCATCAATGAGTCT
GTCATTGAATGTGTCGACAGTCTTTCGCCGTACATGCATGCTAGAGGTTT
GGCATATATGGTCTTCCACTGCCCATTCACTGCTGCTACCGGAAGTAAGA
AGTGGCCTCCAAGATTCGACTACAACCTTTCATAG
back to top