Ggra5072.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5072.t1
Unique NameGgra5072.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:390440..391403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705863.1
PFAMsIP_trans
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008150,GO:0008526,GO:0010876,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0033036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071944
Evalue8.96e-112
EggNOG OGsCOG5083@1|root,KOG3668@2759|Eukaryota
Descriptionphosphatidylinositol transporter activity
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5072Ggra5072Gracilaria gracilis GNS1m malegenetig00000069_pilon 390440..391403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5072.t1Ggra5072.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 390440..391403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5072.t1.stop1Ggra5072.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 390440..390442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5072.t1.CDS1Ggra5072.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 390440..391239 -
Ggra5072.t1.CDS2Ggra5072.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 391355..391403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5072.t1.exon1Ggra5072.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 390440..391239 -
Ggra5072.t1.exon2Ggra5072.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 391355..391403 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5072.t1.intron1Ggra5072.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 391240..391354 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5072.t1.start1Ggra5072.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 391401..391403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5072.t1 ID=Ggra5072.t1|Name=Ggra5072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=283bp
MLIKEYRITMPMTSAEYYLAQLYMVAKSSQEETGKTAGEGIEIVRNHPFD
QNSAVNIYNMPPGQYTEKIMHLKSKLPKFIAMLVPVSMTDIIEKSWNSFP
WCKTEYSNAFFGEKFYMSVETMHSDDRGTQENAVNLPAEDLAKRKVDYLN
IACEDPSVPMAKGEDPTKFLSQKTGRGNLSSTFMEDHDPIMTCYKVVKLR
FKVFGLQSKAEQWGQLYGIRNPFLEYHRKLFCWVDEWYGMTIDDIRAMED
RTAEITKQKLEASLKTKTNDRKSHARIKANVA*
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spliced messenger RNA

>Ggra5072.t1 ID=Ggra5072.t1|Name=Ggra5072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000069_pilon:390440..391403- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGATTAAGGAGTATCGTATAACTATGCCTATGACTTCTGCGGAGTA
TTACCTTGCGCAGTTGTACATGGTGGCAAAGTCCAGTCAAGAAGAGACTG
GAAAGACCGCTGGTGAGGGTATTGAAATCGTTCGCAACCATCCATTTGAC
CAAAACTCTGCAGTCAACATCTACAACATGCCCCCCGGACAGTACACCGA
GAAAATCATGCATTTGAAGAGCAAGCTACCAAAGTTCATCGCCATGCTCG
TGCCGGTTTCAATGACCGACATTATAGAAAAGTCGTGGAACTCTTTTCCA
TGGTGCAAAACAGAGTACAGCAACGCGTTTTTCGGCGAAAAGTTTTACAT
GTCTGTGGAGACCATGCATTCCGATGACAGAGGCACGCAGGAGAATGCTG
TCAATCTACCCGCCGAAGACCTTGCGAAACGTAAGGTCGACTACTTGAAC
ATTGCCTGCGAGGACCCTTCGGTGCCCATGGCCAAGGGAGAAGACCCTAC
CAAGTTCCTGTCCCAGAAGACGGGACGTGGAAATCTCAGCAGCACTTTCA
TGGAGGATCATGACCCCATCATGACGTGTTATAAAGTAGTCAAGCTGCGT
TTCAAGGTGTTCGGTTTGCAGTCCAAGGCCGAACAATGGGGTCAACTGTA
TGGAATCAGGAACCCGTTTTTGGAATATCACAGAAAGCTCTTTTGTTGGG
TTGATGAGTGGTACGGCATGACCATTGATGACATTCGTGCAATGGAAGAT
AGAACTGCCGAAATTACCAAGCAGAAACTTGAAGCTTCTCTGAAGACTAA
GACTAACGACCGAAAGAGCCACGCCAGGATTAAGGCTAACGTGGCATGA
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protein sequence of Ggra5072.t1

>Ggra5072.t1 ID=Ggra5072.t1|Name=Ggra5072.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MLIKEYRITMPMTSAEYYLAQLYMVAKSSQEETGKTAGEGIEIVRNHPFD
QNSAVNIYNMPPGQYTEKIMHLKSKLPKFIAMLVPVSMTDIIEKSWNSFP
WCKTEYSNAFFGEKFYMSVETMHSDDRGTQENAVNLPAEDLAKRKVDYLN
IACEDPSVPMAKGEDPTKFLSQKTGRGNLSSTFMEDHDPIMTCYKVVKLR
FKVFGLQSKAEQWGQLYGIRNPFLEYHRKLFCWVDEWYGMTIDDIRAMED
RTAEITKQKLEASLKTKTNDRKSHARIKANVA*
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mRNA from alignment at tig00000069_pilon:390440..391403-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5072.t1 ID=Ggra5072.t1|Name=Ggra5072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=964bp|location=Sequence derived from alignment at tig00000069_pilon:390440..391403- (Gracilaria gracilis GNS1m male)
ATGCTGATTAAGGAGTATCGTATAACTATGCCTATGACTTCTGCGGAGTG
TAAGTATTTGTTGCAACAGATCAGCGTCTTCGCCATGCGTTGGCTTTCTC
AGCGTCACTTTGCGCCCTAGTGCTGACTCTTGTGAAACCTTTCGTCTGTT
TCTGCGCTATGCAGATTACCTTGCGCAGTTGTACATGGTGGCAAAGTCCA
GTCAAGAAGAGACTGGAAAGACCGCTGGTGAGGGTATTGAAATCGTTCGC
AACCATCCATTTGACCAAAACTCTGCAGTCAACATCTACAACATGCCCCC
CGGACAGTACACCGAGAAAATCATGCATTTGAAGAGCAAGCTACCAAAGT
TCATCGCCATGCTCGTGCCGGTTTCAATGACCGACATTATAGAAAAGTCG
TGGAACTCTTTTCCATGGTGCAAAACAGAGTACAGCAACGCGTTTTTCGG
CGAAAAGTTTTACATGTCTGTGGAGACCATGCATTCCGATGACAGAGGCA
CGCAGGAGAATGCTGTCAATCTACCCGCCGAAGACCTTGCGAAACGTAAG
GTCGACTACTTGAACATTGCCTGCGAGGACCCTTCGGTGCCCATGGCCAA
GGGAGAAGACCCTACCAAGTTCCTGTCCCAGAAGACGGGACGTGGAAATC
TCAGCAGCACTTTCATGGAGGATCATGACCCCATCATGACGTGTTATAAA
GTAGTCAAGCTGCGTTTCAAGGTGTTCGGTTTGCAGTCCAAGGCCGAACA
ATGGGGTCAACTGTATGGAATCAGGAACCCGTTTTTGGAATATCACAGAA
AGCTCTTTTGTTGGGTTGATGAGTGGTACGGCATGACCATTGATGACATT
CGTGCAATGGAAGATAGAACTGCCGAAATTACCAAGCAGAAACTTGAAGC
TTCTCTGAAGACTAAGACTAACGACCGAAAGAGCCACGCCAGGATTAAGG
CTAACGTGGCATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:390440..391403-

>Ggra5072.t1 ID=Ggra5072.t1|Name=Ggra5072.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000069_pilon:390440..391403- (Gracilaria gracilis GNS1m male)
ATGCTGATTAAGGAGTATCGTATAACTATGCCTATGACTTCTGCGGAGTA
TTACCTTGCGCAGTTGTACATGGTGGCAAAGTCCAGTCAAGAAGAGACTG
GAAAGACCGCTGGTGAGGGTATTGAAATCGTTCGCAACCATCCATTTGAC
CAAAACTCTGCAGTCAACATCTACAACATGCCCCCCGGACAGTACACCGA
GAAAATCATGCATTTGAAGAGCAAGCTACCAAAGTTCATCGCCATGCTCG
TGCCGGTTTCAATGACCGACATTATAGAAAAGTCGTGGAACTCTTTTCCA
TGGTGCAAAACAGAGTACAGCAACGCGTTTTTCGGCGAAAAGTTTTACAT
GTCTGTGGAGACCATGCATTCCGATGACAGAGGCACGCAGGAGAATGCTG
TCAATCTACCCGCCGAAGACCTTGCGAAACGTAAGGTCGACTACTTGAAC
ATTGCCTGCGAGGACCCTTCGGTGCCCATGGCCAAGGGAGAAGACCCTAC
CAAGTTCCTGTCCCAGAAGACGGGACGTGGAAATCTCAGCAGCACTTTCA
TGGAGGATCATGACCCCATCATGACGTGTTATAAAGTAGTCAAGCTGCGT
TTCAAGGTGTTCGGTTTGCAGTCCAAGGCCGAACAATGGGGTCAACTGTA
TGGAATCAGGAACCCGTTTTTGGAATATCACAGAAAGCTCTTTTGTTGGG
TTGATGAGTGGTACGGCATGACCATTGATGACATTCGTGCAATGGAAGAT
AGAACTGCCGAAATTACCAAGCAGAAACTTGAAGCTTCTCTGAAGACTAA
GACTAACGACCGAAAGAGCCACGCCAGGATTAAGGCTAACGTGGCATGA
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