Ggra5071.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5071.t1
Unique Name	Ggra5071.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:387569..389593 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	2.93e-18
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5071	Ggra5071	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 387569..389593 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5071.t1.stop1	Ggra5071.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 387569..387571 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5071.t1.CDS1	Ggra5071.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 387569..389593 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5071.t1.exon1	Ggra5071.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 387569..389593 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5071.t1.start1	Ggra5071.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 389591..389593 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5071.t1	Ggra5071.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 387569..389593 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:387569..389593-
coding sequence from alignment at tig00000069_pilon:387569..389593-

mRNA sequence

>Ggra5071.t1 ID=Ggra5071.t1|Name=Ggra5071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MLRRPSRGWSKPEQRERHVISRYSLKAGNNPYTVGFWMRCFFISSILTVL
ASLQLATSLLHRVKKLPVKTNPSTSVGGNAENRHFDYSSSQVQFGTSLVT
ACRNDHEKLRRSLSTWIQQRSLNEIVVVDWGSTPPLKFVVEEVDIDFETH
APIHVVHVQNATNWIAPHALNFAFQSAQYSNVLKVSCSHELEPDFVEHHP
LQPNSFVVGGSHLERVRDEEILKDILFIQRKALIEVGGYDERLREKGSEQ
ADLIERLASKGMHRIDLDYDKVNVATNHIHDKDSLTSHSARVALETDLEL
RKRMPPWKPADFNDSAILGRKILEEQCRTTKSFRHPLVYYSMANRSKGVP
SFREIANPKLLLSAEQAILSRNLQRDFSLPHCFLNNLGLPSQRQLFASLY
NRSTPIPGTKLLVVHCFSSFPSRINLFLSGLVLAKQTGRVLIVLWERSLE
QDPTRLTSVFKMSEDSVLLQDLSRDSVTHLEKCNGKSFSSHIALQDTGHN
SIVFRESQNLVEYVKTDMPMQSNSVKLLNDKLMAKEFKDLELTDEVARTL
GRLKDVGLESSIGLYVGSHSTGRNSSHAGNLQIFTAVQEEINTIRLKKGM
LEAKIYLDADESFVHRFFKEERRMVDNAWVLKTRDNKVAFFDHLIRIVAL
SRTETFSSFADDETSTLIELLRHS*

spliced messenger RNA

>Ggra5071.t1 ID=Ggra5071.t1|Name=Ggra5071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:387569..389593- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAGGAGGCCTTCGAGGGGTTGGTCGAAACCTGAGCAGAGAGAACG
ACACGTTATATCTAGGTACTCGCTTAAGGCAGGAAATAATCCGTATACTG
TCGGGTTTTGGATGCGTTGTTTCTTCATTTCCTCGATTCTGACAGTCTTG
GCATCGCTACAGCTCGCCACATCTCTGCTTCATCGTGTGAAGAAACTTCC
TGTCAAGACTAATCCATCAACTTCTGTAGGTGGCAATGCTGAAAACCGTC
ATTTTGACTATTCATCTTCCCAAGTTCAATTTGGAACATCTCTAGTAACA
GCTTGTCGGAATGATCATGAGAAGCTTCGAAGGTCTTTGTCAACATGGAT
TCAGCAACGCAGTTTGAATGAAATTGTCGTCGTGGATTGGGGATCTACGC
CTCCGTTGAAATTTGTAGTGGAAGAGGTTGACATCGATTTTGAAACCCAT
GCTCCAATCCACGTTGTCCATGTCCAAAATGCTACCAACTGGATCGCACC
TCATGCCTTGAACTTCGCTTTCCAGTCCGCTCAATATTCCAACGTTCTCA
AGGTTAGTTGTTCACACGAACTGGAACCTGATTTTGTGGAACATCATCCG
CTTCAGCCGAATAGTTTCGTGGTAGGTGGTTCCCATCTTGAACGGGTAAG
AGATGAGGAAATCTTGAAGGATATATTGTTTATACAAAGAAAAGCGCTGA
TCGAGGTCGGAGGCTATGACGAGCGTCTTCGGGAAAAAGGAAGTGAACAA
GCAGATCTCATTGAGCGTCTTGCTTCGAAAGGAATGCACAGGATTGATTT
GGATTACGACAAAGTAAATGTCGCTACCAACCATATCCATGACAAAGACT
CTCTAACATCTCACTCAGCTCGCGTGGCGCTAGAAACAGATCTAGAGCTC
AGGAAGAGAATGCCTCCTTGGAAGCCTGCTGACTTCAACGACAGTGCAAT
TCTGGGACGCAAAATCCTAGAAGAGCAATGTCGAACCACAAAGTCTTTCA
GGCACCCCCTCGTATATTACTCAATGGCAAACAGATCAAAAGGTGTGCCT
TCATTCCGTGAAATCGCTAATCCTAAACTTTTGCTTTCGGCCGAACAAGC
TATTCTTTCAAGAAATCTGCAGCGCGACTTCAGTCTTCCACACTGCTTTC
TGAACAATCTTGGTTTACCTTCACAGCGACAGCTGTTTGCTTCATTGTAT
AATCGAAGTACACCAATTCCAGGAACAAAGTTACTTGTTGTGCATTGCTT
CTCAAGTTTTCCGTCACGAATCAATCTTTTCCTTTCAGGTCTCGTCCTTG
CGAAACAAACAGGGCGTGTTCTGATAGTGCTGTGGGAGAGAAGTTTGGAA
CAGGATCCTACCAGATTGACTAGTGTTTTCAAAATGTCGGAAGATAGTGT
GTTACTTCAGGATCTTTCTCGGGACAGTGTTACTCATTTGGAGAAATGCA
ATGGAAAATCATTCTCAAGCCATATTGCATTGCAGGATACTGGACATAAT
TCAATAGTGTTCAGAGAAAGCCAAAACCTTGTGGAATATGTGAAGACGGA
CATGCCTATGCAAAGCAACAGCGTCAAACTATTGAACGACAAGTTAATGG
CAAAAGAGTTCAAGGACTTAGAGCTGACCGATGAAGTTGCTCGTACCCTT
GGGAGATTGAAAGATGTTGGACTTGAATCATCAATTGGTTTATACGTCGG
TTCGCATAGTACGGGGAGGAATTCATCTCATGCGGGCAATCTACAAATCT
TCACTGCTGTACAAGAAGAAATAAATACCATAAGACTGAAGAAGGGAATG
CTGGAAGCGAAGATATATCTTGATGCGGACGAGAGCTTTGTTCATCGATT
CTTCAAAGAAGAAAGGAGAATGGTAGATAATGCTTGGGTGCTCAAAACAC
GAGACAACAAGGTTGCTTTCTTCGACCACTTAATTCGAATTGTTGCTCTT
TCCAGGACAGAAACATTTTCGAGTTTCGCGGATGATGAAACTAGTACGCT
GATTGAGCTATTGCGACATTCATGA

protein sequence of Ggra5071.t1

>Ggra5071.t1 ID=Ggra5071.t1|Name=Ggra5071.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MLRRPSRGWSKPEQRERHVISRYSLKAGNNPYTVGFWMRCFFISSILTVL
ASLQLATSLLHRVKKLPVKTNPSTSVGGNAENRHFDYSSSQVQFGTSLVT
ACRNDHEKLRRSLSTWIQQRSLNEIVVVDWGSTPPLKFVVEEVDIDFETH
APIHVVHVQNATNWIAPHALNFAFQSAQYSNVLKVSCSHELEPDFVEHHP
LQPNSFVVGGSHLERVRDEEILKDILFIQRKALIEVGGYDERLREKGSEQ
ADLIERLASKGMHRIDLDYDKVNVATNHIHDKDSLTSHSARVALETDLEL
RKRMPPWKPADFNDSAILGRKILEEQCRTTKSFRHPLVYYSMANRSKGVP
SFREIANPKLLLSAEQAILSRNLQRDFSLPHCFLNNLGLPSQRQLFASLY
NRSTPIPGTKLLVVHCFSSFPSRINLFLSGLVLAKQTGRVLIVLWERSLE
QDPTRLTSVFKMSEDSVLLQDLSRDSVTHLEKCNGKSFSSHIALQDTGHN
SIVFRESQNLVEYVKTDMPMQSNSVKLLNDKLMAKEFKDLELTDEVARTL
GRLKDVGLESSIGLYVGSHSTGRNSSHAGNLQIFTAVQEEINTIRLKKGM
LEAKIYLDADESFVHRFFKEERRMVDNAWVLKTRDNKVAFFDHLIRIVAL
SRTETFSSFADDETSTLIELLRHS*

mRNA from alignment at tig00000069_pilon:387569..389593-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5071.t1 ID=Ggra5071.t1|Name=Ggra5071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:387569..389593- (Gracilaria gracilis GNS1m male)
ATGCTAAGGAGGCCTTCGAGGGGTTGGTCGAAACCTGAGCAGAGAGAACG
ACACGTTATATCTAGGTACTCGCTTAAGGCAGGAAATAATCCGTATACTG
TCGGGTTTTGGATGCGTTGTTTCTTCATTTCCTCGATTCTGACAGTCTTG
GCATCGCTACAGCTCGCCACATCTCTGCTTCATCGTGTGAAGAAACTTCC
TGTCAAGACTAATCCATCAACTTCTGTAGGTGGCAATGCTGAAAACCGTC
ATTTTGACTATTCATCTTCCCAAGTTCAATTTGGAACATCTCTAGTAACA
GCTTGTCGGAATGATCATGAGAAGCTTCGAAGGTCTTTGTCAACATGGAT
TCAGCAACGCAGTTTGAATGAAATTGTCGTCGTGGATTGGGGATCTACGC
CTCCGTTGAAATTTGTAGTGGAAGAGGTTGACATCGATTTTGAAACCCAT
GCTCCAATCCACGTTGTCCATGTCCAAAATGCTACCAACTGGATCGCACC
TCATGCCTTGAACTTCGCTTTCCAGTCCGCTCAATATTCCAACGTTCTCA
AGGTTAGTTGTTCACACGAACTGGAACCTGATTTTGTGGAACATCATCCG
CTTCAGCCGAATAGTTTCGTGGTAGGTGGTTCCCATCTTGAACGGGTAAG
AGATGAGGAAATCTTGAAGGATATATTGTTTATACAAAGAAAAGCGCTGA
TCGAGGTCGGAGGCTATGACGAGCGTCTTCGGGAAAAAGGAAGTGAACAA
GCAGATCTCATTGAGCGTCTTGCTTCGAAAGGAATGCACAGGATTGATTT
GGATTACGACAAAGTAAATGTCGCTACCAACCATATCCATGACAAAGACT
CTCTAACATCTCACTCAGCTCGCGTGGCGCTAGAAACAGATCTAGAGCTC
AGGAAGAGAATGCCTCCTTGGAAGCCTGCTGACTTCAACGACAGTGCAAT
TCTGGGACGCAAAATCCTAGAAGAGCAATGTCGAACCACAAAGTCTTTCA
GGCACCCCCTCGTATATTACTCAATGGCAAACAGATCAAAAGGTGTGCCT
TCATTCCGTGAAATCGCTAATCCTAAACTTTTGCTTTCGGCCGAACAAGC
TATTCTTTCAAGAAATCTGCAGCGCGACTTCAGTCTTCCACACTGCTTTC
TGAACAATCTTGGTTTACCTTCACAGCGACAGCTGTTTGCTTCATTGTAT
AATCGAAGTACACCAATTCCAGGAACAAAGTTACTTGTTGTGCATTGCTT
CTCAAGTTTTCCGTCACGAATCAATCTTTTCCTTTCAGGTCTCGTCCTTG
CGAAACAAACAGGGCGTGTTCTGATAGTGCTGTGGGAGAGAAGTTTGGAA
CAGGATCCTACCAGATTGACTAGTGTTTTCAAAATGTCGGAAGATAGTGT
GTTACTTCAGGATCTTTCTCGGGACAGTGTTACTCATTTGGAGAAATGCA
ATGGAAAATCATTCTCAAGCCATATTGCATTGCAGGATACTGGACATAAT
TCAATAGTGTTCAGAGAAAGCCAAAACCTTGTGGAATATGTGAAGACGGA
CATGCCTATGCAAAGCAACAGCGTCAAACTATTGAACGACAAGTTAATGG
CAAAAGAGTTCAAGGACTTAGAGCTGACCGATGAAGTTGCTCGTACCCTT
GGGAGATTGAAAGATGTTGGACTTGAATCATCAATTGGTTTATACGTCGG
TTCGCATAGTACGGGGAGGAATTCATCTCATGCGGGCAATCTACAAATCT
TCACTGCTGTACAAGAAGAAATAAATACCATAAGACTGAAGAAGGGAATG
CTGGAAGCGAAGATATATCTTGATGCGGACGAGAGCTTTGTTCATCGATT
CTTCAAAGAAGAAAGGAGAATGGTAGATAATGCTTGGGTGCTCAAAACAC
GAGACAACAAGGTTGCTTTCTTCGACCACTTAATTCGAATTGTTGCTCTT
TCCAGGACAGAAACATTTTCGAGTTTCGCGGATGATGAAACTAGTACGCT
GATTGAGCTATTGCGACATTCATGA

Coding sequence (CDS) from alignment at tig00000069_pilon:387569..389593-

>Ggra5071.t1 ID=Ggra5071.t1|Name=Ggra5071.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:387569..389593- (Gracilaria gracilis GNS1m male)
ATGCTAAGGAGGCCTTCGAGGGGTTGGTCGAAACCTGAGCAGAGAGAACG
ACACGTTATATCTAGGTACTCGCTTAAGGCAGGAAATAATCCGTATACTG
TCGGGTTTTGGATGCGTTGTTTCTTCATTTCCTCGATTCTGACAGTCTTG
GCATCGCTACAGCTCGCCACATCTCTGCTTCATCGTGTGAAGAAACTTCC
TGTCAAGACTAATCCATCAACTTCTGTAGGTGGCAATGCTGAAAACCGTC
ATTTTGACTATTCATCTTCCCAAGTTCAATTTGGAACATCTCTAGTAACA
GCTTGTCGGAATGATCATGAGAAGCTTCGAAGGTCTTTGTCAACATGGAT
TCAGCAACGCAGTTTGAATGAAATTGTCGTCGTGGATTGGGGATCTACGC
CTCCGTTGAAATTTGTAGTGGAAGAGGTTGACATCGATTTTGAAACCCAT
GCTCCAATCCACGTTGTCCATGTCCAAAATGCTACCAACTGGATCGCACC
TCATGCCTTGAACTTCGCTTTCCAGTCCGCTCAATATTCCAACGTTCTCA
AGGTTAGTTGTTCACACGAACTGGAACCTGATTTTGTGGAACATCATCCG
CTTCAGCCGAATAGTTTCGTGGTAGGTGGTTCCCATCTTGAACGGGTAAG
AGATGAGGAAATCTTGAAGGATATATTGTTTATACAAAGAAAAGCGCTGA
TCGAGGTCGGAGGCTATGACGAGCGTCTTCGGGAAAAAGGAAGTGAACAA
GCAGATCTCATTGAGCGTCTTGCTTCGAAAGGAATGCACAGGATTGATTT
GGATTACGACAAAGTAAATGTCGCTACCAACCATATCCATGACAAAGACT
CTCTAACATCTCACTCAGCTCGCGTGGCGCTAGAAACAGATCTAGAGCTC
AGGAAGAGAATGCCTCCTTGGAAGCCTGCTGACTTCAACGACAGTGCAAT
TCTGGGACGCAAAATCCTAGAAGAGCAATGTCGAACCACAAAGTCTTTCA
GGCACCCCCTCGTATATTACTCAATGGCAAACAGATCAAAAGGTGTGCCT
TCATTCCGTGAAATCGCTAATCCTAAACTTTTGCTTTCGGCCGAACAAGC
TATTCTTTCAAGAAATCTGCAGCGCGACTTCAGTCTTCCACACTGCTTTC
TGAACAATCTTGGTTTACCTTCACAGCGACAGCTGTTTGCTTCATTGTAT
AATCGAAGTACACCAATTCCAGGAACAAAGTTACTTGTTGTGCATTGCTT
CTCAAGTTTTCCGTCACGAATCAATCTTTTCCTTTCAGGTCTCGTCCTTG
CGAAACAAACAGGGCGTGTTCTGATAGTGCTGTGGGAGAGAAGTTTGGAA
CAGGATCCTACCAGATTGACTAGTGTTTTCAAAATGTCGGAAGATAGTGT
GTTACTTCAGGATCTTTCTCGGGACAGTGTTACTCATTTGGAGAAATGCA
ATGGAAAATCATTCTCAAGCCATATTGCATTGCAGGATACTGGACATAAT
TCAATAGTGTTCAGAGAAAGCCAAAACCTTGTGGAATATGTGAAGACGGA
CATGCCTATGCAAAGCAACAGCGTCAAACTATTGAACGACAAGTTAATGG
CAAAAGAGTTCAAGGACTTAGAGCTGACCGATGAAGTTGCTCGTACCCTT
GGGAGATTGAAAGATGTTGGACTTGAATCATCAATTGGTTTATACGTCGG
TTCGCATAGTACGGGGAGGAATTCATCTCATGCGGGCAATCTACAAATCT
TCACTGCTGTACAAGAAGAAATAAATACCATAAGACTGAAGAAGGGAATG
CTGGAAGCGAAGATATATCTTGATGCGGACGAGAGCTTTGTTCATCGATT
CTTCAAAGAAGAAAGGAGAATGGTAGATAATGCTTGGGTGCTCAAAACAC
GAGACAACAAGGTTGCTTTCTTCGACCACTTAATTCGAATTGTTGCTCTT
TCCAGGACAGAAACATTTTCGAGTTTCGCGGATGATGAAACTAGTACGCT
GATTGAGCTATTGCGACATTCATGA