Ggra5066.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5066.t1
Unique NameGgra5066.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:379533..379886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5066Ggra5066Gracilaria gracilis GNS1m malegenetig00000069_pilon 379533..379886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5066.t1Ggra5066.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 379533..379886 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5066.t1.start1Ggra5066.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 379533..379535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5066.t1.CDS1Ggra5066.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 379533..379603 +
Ggra5066.t1.CDS2Ggra5066.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 379709..379886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5066.t1.exon1Ggra5066.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 379533..379603 +
Ggra5066.t1.exon2Ggra5066.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 379709..379886 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5066.t1.intron1Ggra5066.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 379604..379708 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5066.t1.stop1Ggra5066.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 379884..379886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5066.t1 ID=Ggra5066.t1|Name=Ggra5066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MSTSEHDEEAATPLLPVTTSTTRMIPQPLSNRTIVLLIAMLSLFFIAEAA
VAIYHTISSPNSYAQSFTSSHSFSVLRKRPWI*
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spliced messenger RNA

>Ggra5066.t1 ID=Ggra5066.t1|Name=Ggra5066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000069_pilon:379533..379886+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACGTCGGAGCATGATGAAGAAGCTGCTACTCCTCTGCTACCTGT
TACGACCTCAACCACAAGGATGATACCTCAACCACTGTCGAATCGCACCA
TTGTCCTTTTAATTGCAATGTTGAGCCTCTTCTTCATTGCGGAGGCTGCT
GTCGCCATCTACCACACCATATCATCACCCAATTCCTATGCCCAAAGCTT
CACCAGCTCTCACAGCTTTTCGGTCCTTAGGAAGAGGCCATGGATCTAA
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protein sequence of Ggra5066.t1

>Ggra5066.t1 ID=Ggra5066.t1|Name=Ggra5066.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MSTSEHDEEAATPLLPVTTSTTRMIPQPLSNRTIVLLIAMLSLFFIAEAA
VAIYHTISSPNSYAQSFTSSHSFSVLRKRPWI*
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mRNA from alignment at tig00000069_pilon:379533..379886+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5066.t1 ID=Ggra5066.t1|Name=Ggra5066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000069_pilon:379533..379886+ (Gracilaria gracilis GNS1m male)
ATGTCGACGTCGGAGCATGATGAAGAAGCTGCTACTCCTCTGCTACCTGT
TACGACCTCAACCACAAGGATGTGAGTAAAAGACACGATGGGCCAACAAA
TGCTTCACACTTCGTATTTTGACAGCAATTCTGCTCTCGACCGAATGACT
AACAGAATCACTTCTTCTCCCAAAAGGATACCTCAACCACTGTCGAATCG
CACCATTGTCCTTTTAATTGCAATGTTGAGCCTCTTCTTCATTGCGGAGG
CTGCTGTCGCCATCTACCACACCATATCATCACCCAATTCCTATGCCCAA
AGCTTCACCAGCTCTCACAGCTTTTCGGTCCTTAGGAAGAGGCCATGGAT
CTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:379533..379886+

>Ggra5066.t1 ID=Ggra5066.t1|Name=Ggra5066.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000069_pilon:379533..379886+ (Gracilaria gracilis GNS1m male)
ATGTCGACGTCGGAGCATGATGAAGAAGCTGCTACTCCTCTGCTACCTGT
TACGACCTCAACCACAAGGATGATACCTCAACCACTGTCGAATCGCACCA
TTGTCCTTTTAATTGCAATGTTGAGCCTCTTCTTCATTGCGGAGGCTGCT
GTCGCCATCTACCACACCATATCATCACCCAATTCCTATGCCCAAAGCTT
CACCAGCTCTCACAGCTTTTCGGTCCTTAGGAAGAGGCCATGGATCTAA
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