Ggra5065.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5065.t1
Unique NameGgra5065.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:377485..378801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1CDU0
PFAMsMFS_1
Max annot lvl4751|Fungi
Evalue2.14e-28
EggNOG OGsCOG0477@1|root,KOG4686@2759|Eukaryota,38NCS@33154|Opisthokonta,3NYNM@4751|Fungi,1GW31@112252|Fungi incertae sedis
DescriptionMajor Facilitator Superfamily
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5065Ggra5065Gracilaria gracilis GNS1m malegenetig00000069_pilon 377485..378801 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5065.t1.start1Ggra5065.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 377485..377487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5065.t1.CDS1Ggra5065.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 377485..378801 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5065.t1.exon1Ggra5065.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 377485..378801 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5065.t1.stop1Ggra5065.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 378799..378801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5065.t1Ggra5065.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 377485..378801 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5065.t1 ID=Ggra5065.t1|Name=Ggra5065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MAQPLSTKWNYEAIPQNAEPSSSKDSYKKGILLFTTSLITIGSHYNKHSL
SSLGPAIIEALSLHRTKYGLLFSSQAIPGIVLPVVSGVALSCFPYAPSAI
ILSSLIMLSTVLCALGVVHTSYGLLIVGRFLFGLCDGALTTLQGAIIARC
FRSQSGIGFGVMLLVSRLASFTGLTLPAVLYNEYGLHFAMWCSVLFCLPP
FLATVIYSRLNTQTVSSSAALSWDLLISMMQKLTLPFWLISYDWLAVACV
VFTLLHFAPDAFQASFGWNPLHSGLLSGGMLLYAGVTSPIFGALQDRTGH
RGYILAGCCTLLTIGSVLCSVALVKSIGSTSMLYLGLIIIAIGFGVAPVT
LMSSVALSVEDTVVPVALGVYKAVENAGMSVVHVGVGALRDITGEYVASF
FMLGAIAATGMIASCALSRSSGFVEHHCELPADVEAAE*
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spliced messenger RNA

>Ggra5065.t1 ID=Ggra5065.t1|Name=Ggra5065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000069_pilon:377485..378801+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGCCGCTGAGCACCAAGTGGAACTATGAAGCCATACCCCAAAA
TGCCGAACCCTCATCTTCAAAGGATTCATATAAGAAAGGAATATTGCTTT
TCACTACGTCTCTCATCACCATAGGATCTCATTACAACAAACATTCCCTC
TCTTCCTTGGGTCCAGCTATCATTGAAGCCCTGAGTTTGCACCGCACAAA
GTATGGACTTCTTTTCTCTTCTCAAGCAATTCCTGGAATTGTTTTGCCAG
TTGTTTCTGGTGTGGCTTTGAGTTGCTTTCCGTATGCGCCATCGGCCATC
ATCCTATCATCGCTTATTATGCTTTCCACTGTTCTCTGTGCGTTGGGTGT
TGTGCATACATCATATGGACTTCTCATAGTCGGTCGGTTTTTGTTTGGCT
TGTGCGATGGTGCACTTACTACTCTACAAGGGGCAATTATCGCGAGATGC
TTTCGATCCCAATCTGGAATAGGCTTTGGTGTGATGCTCCTTGTCAGTAG
ATTGGCCTCGTTTACTGGACTGACACTTCCAGCGGTTTTGTACAATGAGT
ATGGTCTGCACTTCGCCATGTGGTGTTCAGTGCTGTTCTGCCTGCCACCC
TTCCTTGCAACCGTGATATATTCAAGACTCAATACACAAACAGTATCGTC
GTCGGCGGCGTTATCCTGGGACCTCTTGATCTCCATGATGCAGAAGCTCA
CATTACCATTCTGGCTTATATCATACGACTGGTTAGCTGTCGCATGCGTA
GTATTCACATTGCTACACTTCGCACCAGATGCATTCCAAGCATCATTTGG
ATGGAATCCTTTGCATTCTGGTTTACTGTCGGGAGGTATGCTTTTGTACG
CTGGTGTAACATCTCCAATTTTTGGAGCGTTGCAAGATAGGACTGGCCAT
CGCGGTTACATCTTGGCCGGTTGCTGTACATTGCTCACAATTGGTTCCGT
TCTGTGCTCCGTTGCCTTAGTGAAATCAATTGGCTCCACCTCTATGCTAT
ACCTAGGACTGATAATCATAGCCATTGGATTTGGGGTTGCACCAGTTACG
TTAATGAGTTCAGTTGCACTCTCTGTGGAGGACACAGTTGTGCCAGTTGC
GCTGGGCGTGTACAAAGCAGTCGAGAACGCCGGAATGAGCGTTGTTCATG
TGGGAGTTGGTGCTTTGCGAGATATCACAGGTGAATACGTTGCTTCGTTT
TTCATGCTGGGCGCAATTGCCGCAACTGGTATGATTGCTTCATGTGCTCT
TTCACGATCCTCAGGCTTTGTCGAACATCATTGTGAGTTGCCGGCAGACG
TAGAAGCTGCAGAATGA
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protein sequence of Ggra5065.t1

>Ggra5065.t1 ID=Ggra5065.t1|Name=Ggra5065.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MAQPLSTKWNYEAIPQNAEPSSSKDSYKKGILLFTTSLITIGSHYNKHSL
SSLGPAIIEALSLHRTKYGLLFSSQAIPGIVLPVVSGVALSCFPYAPSAI
ILSSLIMLSTVLCALGVVHTSYGLLIVGRFLFGLCDGALTTLQGAIIARC
FRSQSGIGFGVMLLVSRLASFTGLTLPAVLYNEYGLHFAMWCSVLFCLPP
FLATVIYSRLNTQTVSSSAALSWDLLISMMQKLTLPFWLISYDWLAVACV
VFTLLHFAPDAFQASFGWNPLHSGLLSGGMLLYAGVTSPIFGALQDRTGH
RGYILAGCCTLLTIGSVLCSVALVKSIGSTSMLYLGLIIIAIGFGVAPVT
LMSSVALSVEDTVVPVALGVYKAVENAGMSVVHVGVGALRDITGEYVASF
FMLGAIAATGMIASCALSRSSGFVEHHCELPADVEAAE*
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mRNA from alignment at tig00000069_pilon:377485..378801+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5065.t1 ID=Ggra5065.t1|Name=Ggra5065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000069_pilon:377485..378801+ (Gracilaria gracilis GNS1m male)
ATGGCTCAGCCGCTGAGCACCAAGTGGAACTATGAAGCCATACCCCAAAA
TGCCGAACCCTCATCTTCAAAGGATTCATATAAGAAAGGAATATTGCTTT
TCACTACGTCTCTCATCACCATAGGATCTCATTACAACAAACATTCCCTC
TCTTCCTTGGGTCCAGCTATCATTGAAGCCCTGAGTTTGCACCGCACAAA
GTATGGACTTCTTTTCTCTTCTCAAGCAATTCCTGGAATTGTTTTGCCAG
TTGTTTCTGGTGTGGCTTTGAGTTGCTTTCCGTATGCGCCATCGGCCATC
ATCCTATCATCGCTTATTATGCTTTCCACTGTTCTCTGTGCGTTGGGTGT
TGTGCATACATCATATGGACTTCTCATAGTCGGTCGGTTTTTGTTTGGCT
TGTGCGATGGTGCACTTACTACTCTACAAGGGGCAATTATCGCGAGATGC
TTTCGATCCCAATCTGGAATAGGCTTTGGTGTGATGCTCCTTGTCAGTAG
ATTGGCCTCGTTTACTGGACTGACACTTCCAGCGGTTTTGTACAATGAGT
ATGGTCTGCACTTCGCCATGTGGTGTTCAGTGCTGTTCTGCCTGCCACCC
TTCCTTGCAACCGTGATATATTCAAGACTCAATACACAAACAGTATCGTC
GTCGGCGGCGTTATCCTGGGACCTCTTGATCTCCATGATGCAGAAGCTCA
CATTACCATTCTGGCTTATATCATACGACTGGTTAGCTGTCGCATGCGTA
GTATTCACATTGCTACACTTCGCACCAGATGCATTCCAAGCATCATTTGG
ATGGAATCCTTTGCATTCTGGTTTACTGTCGGGAGGTATGCTTTTGTACG
CTGGTGTAACATCTCCAATTTTTGGAGCGTTGCAAGATAGGACTGGCCAT
CGCGGTTACATCTTGGCCGGTTGCTGTACATTGCTCACAATTGGTTCCGT
TCTGTGCTCCGTTGCCTTAGTGAAATCAATTGGCTCCACCTCTATGCTAT
ACCTAGGACTGATAATCATAGCCATTGGATTTGGGGTTGCACCAGTTACG
TTAATGAGTTCAGTTGCACTCTCTGTGGAGGACACAGTTGTGCCAGTTGC
GCTGGGCGTGTACAAAGCAGTCGAGAACGCCGGAATGAGCGTTGTTCATG
TGGGAGTTGGTGCTTTGCGAGATATCACAGGTGAATACGTTGCTTCGTTT
TTCATGCTGGGCGCAATTGCCGCAACTGGTATGATTGCTTCATGTGCTCT
TTCACGATCCTCAGGCTTTGTCGAACATCATTGTGAGTTGCCGGCAGACG
TAGAAGCTGCAGAATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:377485..378801+

>Ggra5065.t1 ID=Ggra5065.t1|Name=Ggra5065.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000069_pilon:377485..378801+ (Gracilaria gracilis GNS1m male)
ATGGCTCAGCCGCTGAGCACCAAGTGGAACTATGAAGCCATACCCCAAAA
TGCCGAACCCTCATCTTCAAAGGATTCATATAAGAAAGGAATATTGCTTT
TCACTACGTCTCTCATCACCATAGGATCTCATTACAACAAACATTCCCTC
TCTTCCTTGGGTCCAGCTATCATTGAAGCCCTGAGTTTGCACCGCACAAA
GTATGGACTTCTTTTCTCTTCTCAAGCAATTCCTGGAATTGTTTTGCCAG
TTGTTTCTGGTGTGGCTTTGAGTTGCTTTCCGTATGCGCCATCGGCCATC
ATCCTATCATCGCTTATTATGCTTTCCACTGTTCTCTGTGCGTTGGGTGT
TGTGCATACATCATATGGACTTCTCATAGTCGGTCGGTTTTTGTTTGGCT
TGTGCGATGGTGCACTTACTACTCTACAAGGGGCAATTATCGCGAGATGC
TTTCGATCCCAATCTGGAATAGGCTTTGGTGTGATGCTCCTTGTCAGTAG
ATTGGCCTCGTTTACTGGACTGACACTTCCAGCGGTTTTGTACAATGAGT
ATGGTCTGCACTTCGCCATGTGGTGTTCAGTGCTGTTCTGCCTGCCACCC
TTCCTTGCAACCGTGATATATTCAAGACTCAATACACAAACAGTATCGTC
GTCGGCGGCGTTATCCTGGGACCTCTTGATCTCCATGATGCAGAAGCTCA
CATTACCATTCTGGCTTATATCATACGACTGGTTAGCTGTCGCATGCGTA
GTATTCACATTGCTACACTTCGCACCAGATGCATTCCAAGCATCATTTGG
ATGGAATCCTTTGCATTCTGGTTTACTGTCGGGAGGTATGCTTTTGTACG
CTGGTGTAACATCTCCAATTTTTGGAGCGTTGCAAGATAGGACTGGCCAT
CGCGGTTACATCTTGGCCGGTTGCTGTACATTGCTCACAATTGGTTCCGT
TCTGTGCTCCGTTGCCTTAGTGAAATCAATTGGCTCCACCTCTATGCTAT
ACCTAGGACTGATAATCATAGCCATTGGATTTGGGGTTGCACCAGTTACG
TTAATGAGTTCAGTTGCACTCTCTGTGGAGGACACAGTTGTGCCAGTTGC
GCTGGGCGTGTACAAAGCAGTCGAGAACGCCGGAATGAGCGTTGTTCATG
TGGGAGTTGGTGCTTTGCGAGATATCACAGGTGAATACGTTGCTTCGTTT
TTCATGCTGGGCGCAATTGCCGCAACTGGTATGATTGCTTCATGTGCTCT
TTCACGATCCTCAGGCTTTGTCGAACATCATTGTGAGTTGCCGGCAGACG
TAGAAGCTGCAGAATGA
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