Ggra5064.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5064.t1
Unique NameGgra5064.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:373426..375524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1434929.X946_1727
Preferred nameprmA
PFAMsPrmA
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02687
Evalue7.27e-61
EggNOG OGsCOG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,2VH76@28216|Betaproteobacteria,1K3BV@119060|Burkholderiaceae
DescriptionRibosomal protein L11 methyltransferase
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5064Ggra5064Gracilaria gracilis GNS1m malegenetig00000069_pilon 373426..375524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5064.t1Ggra5064.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 373426..375524 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5064.t1.stop1Ggra5064.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 373426..373428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5064.t1.CDS1Ggra5064.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 373426..374331 -
Ggra5064.t1.CDS2Ggra5064.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 375183..375252 -
Ggra5064.t1.CDS3Ggra5064.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 375346..375524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5064.t1.exon1Ggra5064.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 373426..374331 -
Ggra5064.t1.exon2Ggra5064.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 375183..375252 -
Ggra5064.t1.exon3Ggra5064.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 375346..375524 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5064.t1.intron1Ggra5064.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 374332..375182 -
Ggra5064.t1.intron2Ggra5064.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 375253..375345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5064.t1.start1Ggra5064.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 375522..375524 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5064.t1 ID=Ggra5064.t1|Name=Ggra5064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=385bp
MGLSTSSTKHSKWERDRGVIPSILWARRALGFCAEEVGMLGGIAKGESGL
EDEGIRCGDGAYPAGAQSSWIPVTGLSHNFSRLSSSDANFISDLLFELGA
LSVSVEDGCRGTEDETPIFDEPPISGTLATKAPPPLWQNATISALYPAQC
DVEQLIMFIATEFGLTESPTFSLESDLFDEKDPETWIRQVRESFVPIIVG
RIRISFPWHDLDPSFINLKLEPGCAFGTGEHPTTKLCLDWIQRTVKPNMT
LLDFGTGSGVLAIAAVLYGEGVQAVGVDLDVNAVQTAKSNAERNQVVDKV
TFCENRDEPQNKKYDVIVANILAEPLKYLAAKLVHQMTPGASIGLAGVLC
SQAVDVMESYQREGVMLQQAEVNNEWALLIGRKP*
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spliced messenger RNA

>Ggra5064.t1 ID=Ggra5064.t1|Name=Ggra5064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000069_pilon:373426..375524- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTGTCGACCTCGTCAACCAAGCATTCGAAGTGGGAGCGCGATCG
TGGCGTCATTCCCTCAATCCTCTGGGCAAGGCGGGCGCTTGGATTCTGCG
CAGAAGAAGTGGGCATGCTTGGCGGCATTGCAAAAGGTGAAAGTGGCTTG
GAGGATGAAGGGATTCGTTGCGGGGATGGGGCCTACCCAGCCGGAGCGCA
ATCGAGTTGGATTCCTGTGACGGGTTTGAGCCATAACTTCAGCAGATTAT
CTTCGTCAGATGCTAACTTCATATCTGATCTGCTCTTTGAATTAGGCGCC
TTGTCAGTCTCAGTGGAGGACGGCTGTCGTGGAACTGAAGATGAAACTCC
CATTTTTGATGAACCTCCCATATCTGGGACATTGGCTACAAAAGCACCTC
CACCGCTCTGGCAGAACGCCACAATCTCTGCCCTTTACCCAGCCCAGTGC
GACGTAGAACAACTCATTATGTTCATCGCTACGGAATTTGGCCTGACCGA
ATCCCCCACATTTTCCTTAGAGAGCGATCTCTTCGATGAGAAAGATCCAG
AAACCTGGATCCGACAAGTGCGTGAGTCGTTTGTCCCGATAATTGTTGGG
AGAATTCGCATCTCGTTCCCATGGCATGACCTGGATCCCTCTTTCATAAA
CCTTAAACTAGAACCAGGATGTGCTTTTGGAACCGGTGAGCATCCCACAA
CGAAACTATGTCTGGACTGGATTCAAAGGACTGTTAAACCAAACATGACA
TTGTTGGATTTTGGAACTGGGAGTGGCGTACTGGCGATCGCAGCCGTTTT
ATATGGCGAAGGCGTCCAAGCAGTTGGAGTTGACCTCGATGTGAATGCAG
TACAAACAGCAAAGTCAAACGCTGAGAGAAATCAAGTGGTGGACAAAGTT
ACATTCTGTGAAAATCGAGACGAACCCCAGAATAAGAAGTATGACGTTAT
CGTCGCGAACATTTTAGCTGAACCACTAAAGTACCTTGCAGCAAAACTGG
TCCATCAAATGACGCCAGGAGCGTCTATCGGCCTTGCTGGTGTATTGTGC
TCACAAGCTGTCGACGTTATGGAAAGCTATCAGCGTGAAGGAGTCATGCT
TCAACAGGCAGAGGTGAATAACGAGTGGGCATTGCTGATCGGACGAAAGC
CTTAG
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protein sequence of Ggra5064.t1

>Ggra5064.t1 ID=Ggra5064.t1|Name=Ggra5064.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=385bp
MGLSTSSTKHSKWERDRGVIPSILWARRALGFCAEEVGMLGGIAKGESGL
EDEGIRCGDGAYPAGAQSSWIPVTGLSHNFSRLSSSDANFISDLLFELGA
LSVSVEDGCRGTEDETPIFDEPPISGTLATKAPPPLWQNATISALYPAQC
DVEQLIMFIATEFGLTESPTFSLESDLFDEKDPETWIRQVRESFVPIIVG
RIRISFPWHDLDPSFINLKLEPGCAFGTGEHPTTKLCLDWIQRTVKPNMT
LLDFGTGSGVLAIAAVLYGEGVQAVGVDLDVNAVQTAKSNAERNQVVDKV
TFCENRDEPQNKKYDVIVANILAEPLKYLAAKLVHQMTPGASIGLAGVLC
SQAVDVMESYQREGVMLQQAEVNNEWALLIGRKP*
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mRNA from alignment at tig00000069_pilon:373426..375524-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5064.t1 ID=Ggra5064.t1|Name=Ggra5064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2099bp|location=Sequence derived from alignment at tig00000069_pilon:373426..375524- (Gracilaria gracilis GNS1m male)
ATGGGCTTGTCGACCTCGTCAACCAAGCATTCGAAGTGGGAGCGCGATCG
TGGCGTCATTCCCTCAATCCTCTGGGCAAGGCGGGCGCTTGGATTCTGCG
CAGAAGAAGTGGGCATGCTTGGCGGCATTGCAAAAGGTGAAAGTGGCTTG
GAGGATGAAGGGATTCGTTGCGGGGATGGGTACGTTCGGCCTCTAGTTCT
CATTTATACCAATACGACTAGAGTTCATGTGGTCGCCAAGCTTTTTCTTA
TATCGACTAATCGTAACCTCAGGGCCTACCCAGCCGGAGCGCAATCGAGT
TGGATTCCTGTGACGGGTTTGAGCCATAACTTCAGCAGATTAGTGACTTA
ACGAGAGGCGGAAACGGCGGTGTATACGGAGCTTCTAAATGACATAGAGT
ATTACGTCTTCAGGTGTCCCAAAGGGACGCTGTCGGAGCGAACATGTGTT
CCTCCTCTCCGAGATCGGAAAGTACTTTGTGGGGAGCAGTTAATCAGAAC
GTGTCCTGAAGAGTGCTGGCTGACCTAGCGAGAGAACGCTTCTATGATAA
GAACCGGTCGGGGTCCTTAGCAAACCCCGCGCGAGACGAGAAAATGGGCG
TACGTGTCCCAAAATAAAGGAGAAGAAGAACTGGAGTTACGTTGTAATAA
CGCTAGCTCACTCGAGTTTGTTCAACAAGCTTTGTGGTAGTCGCGACTGA
ACATTGTACAGTAGGACCAAATTTGTGAACGAGTGCATGGGTAATACAGA
TCCGGGCTCGCAAGAAAAAGAAAGGAAAGAAGAAAACACAGAACTGGGTC
TTTGACCGGGCAAGATCAATTCTAGCCCGTGCGGTGTGCAAGATAAAGCG
AGATTTGTAGATATGTCGCACAATCACAGACAGAATAACCATTCCGAAGC
CTGTCTTCCTTTGCTGATGTGCAGGTTTTCACCTACGTACACAGCTATTG
TAAATTTCTATCTTACTAATCTGTCACTTGCCAGTGAGATATCTTCTCAC
CACTTACCCTGTCGACATTCCACTCCTGTTCATGTTCTACGGCGTCTTTG
TCGAAGTGGCCACAACGAAGTCCCCTCAGTAGCTGAAGATACAAGCTTTC
ACTTATCCAGAACTGCGGAGCATCCAAAACTAGCATTTCGCAAGCGAGGT
AATAATCCATATGCCTCTGCATCGCATTCAAGTATCTATCCAGTCTTCGT
CAGATGCTAACTTCATATCTGATCTGCTCTTTGAATTAGGCGCCTTGTCA
GTCTCAGTGGAGGACGGCTGTCGTGGAACTGAAGATGAAACTCCCATTTT
TGATGAACCTCCCATATCTGGGACATTGGCTACAAAAGCACCTCCACCGC
TCTGGCAGAACGCCACAATCTCTGCCCTTTACCCAGCCCAGTGCGACGTA
GAACAACTCATTATGTTCATCGCTACGGAATTTGGCCTGACCGAATCCCC
CACATTTTCCTTAGAGAGCGATCTCTTCGATGAGAAAGATCCAGAAACCT
GGATCCGACAAGTGCGTGAGTCGTTTGTCCCGATAATTGTTGGGAGAATT
CGCATCTCGTTCCCATGGCATGACCTGGATCCCTCTTTCATAAACCTTAA
ACTAGAACCAGGATGTGCTTTTGGAACCGGTGAGCATCCCACAACGAAAC
TATGTCTGGACTGGATTCAAAGGACTGTTAAACCAAACATGACATTGTTG
GATTTTGGAACTGGGAGTGGCGTACTGGCGATCGCAGCCGTTTTATATGG
CGAAGGCGTCCAAGCAGTTGGAGTTGACCTCGATGTGAATGCAGTACAAA
CAGCAAAGTCAAACGCTGAGAGAAATCAAGTGGTGGACAAAGTTACATTC
TGTGAAAATCGAGACGAACCCCAGAATAAGAAGTATGACGTTATCGTCGC
GAACATTTTAGCTGAACCACTAAAGTACCTTGCAGCAAAACTGGTCCATC
AAATGACGCCAGGAGCGTCTATCGGCCTTGCTGGTGTATTGTGCTCACAA
GCTGTCGACGTTATGGAAAGCTATCAGCGTGAAGGAGTCATGCTTCAACA
GGCAGAGGTGAATAACGAGTGGGCATTGCTGATCGGACGAAAGCCTTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:373426..375524-

>Ggra5064.t1 ID=Ggra5064.t1|Name=Ggra5064.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00000069_pilon:373426..375524- (Gracilaria gracilis GNS1m male)
ATGGGCTTGTCGACCTCGTCAACCAAGCATTCGAAGTGGGAGCGCGATCG
TGGCGTCATTCCCTCAATCCTCTGGGCAAGGCGGGCGCTTGGATTCTGCG
CAGAAGAAGTGGGCATGCTTGGCGGCATTGCAAAAGGTGAAAGTGGCTTG
GAGGATGAAGGGATTCGTTGCGGGGATGGGGCCTACCCAGCCGGAGCGCA
ATCGAGTTGGATTCCTGTGACGGGTTTGAGCCATAACTTCAGCAGATTAT
CTTCGTCAGATGCTAACTTCATATCTGATCTGCTCTTTGAATTAGGCGCC
TTGTCAGTCTCAGTGGAGGACGGCTGTCGTGGAACTGAAGATGAAACTCC
CATTTTTGATGAACCTCCCATATCTGGGACATTGGCTACAAAAGCACCTC
CACCGCTCTGGCAGAACGCCACAATCTCTGCCCTTTACCCAGCCCAGTGC
GACGTAGAACAACTCATTATGTTCATCGCTACGGAATTTGGCCTGACCGA
ATCCCCCACATTTTCCTTAGAGAGCGATCTCTTCGATGAGAAAGATCCAG
AAACCTGGATCCGACAAGTGCGTGAGTCGTTTGTCCCGATAATTGTTGGG
AGAATTCGCATCTCGTTCCCATGGCATGACCTGGATCCCTCTTTCATAAA
CCTTAAACTAGAACCAGGATGTGCTTTTGGAACCGGTGAGCATCCCACAA
CGAAACTATGTCTGGACTGGATTCAAAGGACTGTTAAACCAAACATGACA
TTGTTGGATTTTGGAACTGGGAGTGGCGTACTGGCGATCGCAGCCGTTTT
ATATGGCGAAGGCGTCCAAGCAGTTGGAGTTGACCTCGATGTGAATGCAG
TACAAACAGCAAAGTCAAACGCTGAGAGAAATCAAGTGGTGGACAAAGTT
ACATTCTGTGAAAATCGAGACGAACCCCAGAATAAGAAGTATGACGTTAT
CGTCGCGAACATTTTAGCTGAACCACTAAAGTACCTTGCAGCAAAACTGG
TCCATCAAATGACGCCAGGAGCGTCTATCGGCCTTGCTGGTGTATTGTGC
TCACAAGCTGTCGACGTTATGGAAAGCTATCAGCGTGAAGGAGTCATGCT
TCAACAGGCAGAGGTGAATAACGAGTGGGCATTGCTGATCGGACGAAAGC
CTTAG
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