Ggra5061.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5061.t1
Unique NameGgra5061.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:366697..367673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP53471
Preferred nameSRD5A3
PFAMsSteroid_dh
Max annot lvl33208|Metazoa
KEGG rclassRC00145
KEGG koko:K12345
KEGG ReactionR02208,R02497,R08954,R10242
KEGG Pathwayko00140,map00140
GOsGO:0003674,GO:0003824,GO:0003865,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006644,GO:0006694,GO:0006702,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008209,GO:0008300,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016042,GO:0016093,GO:0016095,GO:0016229,GO:0016491,GO:0016627,GO:0016628,GO:0019348,GO:0019538,GO:0019637,GO:0031984,GO:0033765,GO:0034645,GO:0034754,GO:0036211,GO:0042175,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046164,GO:0046465,GO:0055114,GO:0065007,GO:0065008,GO:0070085,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616
Evalue2.13e-18
EggNOG OGsKOG1640@1|root,KOG1640@2759|Eukaryota,39G0Y@33154|Opisthokonta,3BB66@33208|Metazoa
EC1.3.1.22,1.3.1.94
DescriptionSteroid 5 alpha-reductase 3
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5061Ggra5061Gracilaria gracilis GNS1m malegenetig00000069_pilon 366697..367673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5061.t1Ggra5061.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 366697..367673 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5061.t1.start1Ggra5061.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 366697..366699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5061.t1.CDS1Ggra5061.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 366697..367176 +
Ggra5061.t1.CDS2Ggra5061.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 367262..367515 +
Ggra5061.t1.CDS3Ggra5061.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 367604..367673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5061.t1.exon1Ggra5061.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 366697..367176 +
Ggra5061.t1.exon2Ggra5061.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 367262..367515 +
Ggra5061.t1.exon3Ggra5061.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 367604..367673 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5061.t1.intron1Ggra5061.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 367177..367261 +
Ggra5061.t1.intron2Ggra5061.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 367516..367603 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5061.t1.stop1Ggra5061.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 367671..367673 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5061.t1 ID=Ggra5061.t1|Name=Ggra5061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MMDFLRIIYATVHVAWVTATIAFLLRRAVPLLNDVLSYGKFQTASRNRQR
ISILEKACKPLLPTPMVWKMLYVVGLTSSGVCAILLQTTRHPVAILYTVQ
VARRLFECFFVHKFSKTRLLSLAQFVSGTLFYVLASLTIHLESYRMKLLD
ERIRIPRMILVLATFLFGSVAQHSSHRTLANVTPRVGKYGLPHGLLFRYV
ICPHYFAEIVVYLSFVLALQRTGSALMLLFVVTNLTDSALRTKQCISHLL
TSAYYLLASKEENRVGR*
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spliced messenger RNA

>Ggra5061.t1 ID=Ggra5061.t1|Name=Ggra5061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000069_pilon:366697..367673+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGATTTTCTGAGAATCATCTATGCTACCGTGCATGTTGCTTGGGT
GACAGCCACAATAGCGTTCTTGCTCAGACGCGCTGTACCTTTGTTGAATG
ATGTTTTGAGTTACGGAAAGTTCCAGACTGCTAGTAGGAATAGGCAGCGC
ATATCAATACTGGAGAAGGCATGCAAACCGCTTTTGCCCACACCAATGGT
GTGGAAGATGTTGTACGTCGTGGGACTCACCAGCTCTGGAGTCTGTGCCA
TTTTGCTTCAGACCACCAGACATCCGGTTGCCATTCTTTACACGGTGCAA
GTTGCTCGCAGACTCTTCGAATGCTTCTTTGTGCACAAGTTTTCTAAAAC
TCGGTTGCTCTCTCTGGCTCAATTTGTCTCTGGAACTTTGTTCTATGTTC
TTGCATCCTTAACTATCCACTTGGAGAGCTACAGAATGAAATTATTGGAT
GAAAGAATACGAATTCCTCGAATGATTCTCGTCTTAGCGACATTCCTCTT
TGGGTCAGTCGCACAGCATTCTTCACACCGCACGCTTGCAAACGTAACAC
CTAGAGTTGGCAAGTACGGCTTACCGCACGGGCTCTTGTTCCGCTATGTG
ATCTGTCCCCATTACTTCGCTGAGATTGTGGTGTATTTATCATTCGTGTT
GGCATTGCAACGCACTGGTTCGGCCCTAATGCTTCTGTTCGTTGTTACAA
ACCTCACGGATTCAGCTCTGCGCACAAAACAATGCATTTCTCATCTTCTT
ACTTCCGCGTACTATCTATTGGCGTCGAAAGAGGAAAACCGAGTGGGAAG
ATAA
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protein sequence of Ggra5061.t1

>Ggra5061.t1 ID=Ggra5061.t1|Name=Ggra5061.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MMDFLRIIYATVHVAWVTATIAFLLRRAVPLLNDVLSYGKFQTASRNRQR
ISILEKACKPLLPTPMVWKMLYVVGLTSSGVCAILLQTTRHPVAILYTVQ
VARRLFECFFVHKFSKTRLLSLAQFVSGTLFYVLASLTIHLESYRMKLLD
ERIRIPRMILVLATFLFGSVAQHSSHRTLANVTPRVGKYGLPHGLLFRYV
ICPHYFAEIVVYLSFVLALQRTGSALMLLFVVTNLTDSALRTKQCISHLL
TSAYYLLASKEENRVGR*
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mRNA from alignment at tig00000069_pilon:366697..367673+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5061.t1 ID=Ggra5061.t1|Name=Ggra5061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=977bp|location=Sequence derived from alignment at tig00000069_pilon:366697..367673+ (Gracilaria gracilis GNS1m male)
ATGATGGATTTTCTGAGAATCATCTATGCTACCGTGCATGTTGCTTGGGT
GACAGCCACAATAGCGTTCTTGCTCAGACGCGCTGTACCTTTGTTGAATG
ATGTTTTGAGTTACGGAAAGTTCCAGACTGCTAGTAGGAATAGGCAGCGC
ATATCAATACTGGAGAAGGCATGCAAACCGCTTTTGCCCACACCAATGGT
GTGGAAGATGTTGTACGTCGTGGGACTCACCAGCTCTGGAGTCTGTGCCA
TTTTGCTTCAGACCACCAGACATCCGGTTGCCATTCTTTACACGGTGCAA
GTTGCTCGCAGACTCTTCGAATGCTTCTTTGTGCACAAGTTTTCTAAAAC
TCGGTTGCTCTCTCTGGCTCAATTTGTCTCTGGAACTTTGTTCTATGTTC
TTGCATCCTTAACTATCCACTTGGAGAGCTACAGAATGAAATTATTGGAT
GAAAGAATACGAATTCCTCGAATGATTCTCGTAAGTTCACTGCACTATAA
TGTACATCGCTTCATAGGCATGAAAACTAATGGGGTTTCTGACGTTTTCA
CTCTACGCAAATTAGGTCTTAGCGACATTCCTCTTTGGGTCAGTCGCACA
GCATTCTTCACACCGCACGCTTGCAAACGTAACACCTAGAGTTGGCAAGT
ACGGCTTACCGCACGGGCTCTTGTTCCGCTATGTGATCTGTCCCCATTAC
TTCGCTGAGATTGTGGTGTATTTATCATTCGTGTTGGCATTGCAACGCAC
TGGTTCGGCCCTAATGCTTCTGTTCGTTGTTACAAACCTCACGGATTCAG
CTCTGCGCACAAAACAATGGTACGCAGCGATACTCAAATCAGCAATACCT
TCGGTCAGAAAACGGCGCGCAATCTTTCCTTATGTTCTGTAAAGAGCCAT
AGCACAGCATTTCTCATCTTCTTACTTCCGCGTACTATCTATTGGCGTCG
AAAGAGGAAAACCGAGTGGGAAGATAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:366697..367673+

>Ggra5061.t1 ID=Ggra5061.t1|Name=Ggra5061.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000069_pilon:366697..367673+ (Gracilaria gracilis GNS1m male)
ATGATGGATTTTCTGAGAATCATCTATGCTACCGTGCATGTTGCTTGGGT
GACAGCCACAATAGCGTTCTTGCTCAGACGCGCTGTACCTTTGTTGAATG
ATGTTTTGAGTTACGGAAAGTTCCAGACTGCTAGTAGGAATAGGCAGCGC
ATATCAATACTGGAGAAGGCATGCAAACCGCTTTTGCCCACACCAATGGT
GTGGAAGATGTTGTACGTCGTGGGACTCACCAGCTCTGGAGTCTGTGCCA
TTTTGCTTCAGACCACCAGACATCCGGTTGCCATTCTTTACACGGTGCAA
GTTGCTCGCAGACTCTTCGAATGCTTCTTTGTGCACAAGTTTTCTAAAAC
TCGGTTGCTCTCTCTGGCTCAATTTGTCTCTGGAACTTTGTTCTATGTTC
TTGCATCCTTAACTATCCACTTGGAGAGCTACAGAATGAAATTATTGGAT
GAAAGAATACGAATTCCTCGAATGATTCTCGTCTTAGCGACATTCCTCTT
TGGGTCAGTCGCACAGCATTCTTCACACCGCACGCTTGCAAACGTAACAC
CTAGAGTTGGCAAGTACGGCTTACCGCACGGGCTCTTGTTCCGCTATGTG
ATCTGTCCCCATTACTTCGCTGAGATTGTGGTGTATTTATCATTCGTGTT
GGCATTGCAACGCACTGGTTCGGCCCTAATGCTTCTGTTCGTTGTTACAA
ACCTCACGGATTCAGCTCTGCGCACAAAACAATGCATTTCTCATCTTCTT
ACTTCCGCGTACTATCTATTGGCGTCGAAAGAGGAAAACCGAGTGGGAAG
ATAA
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