Ggra5059.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5059.t1
Unique NameGgra5059.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:362414..363057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5679.XP_010702928.1
Max annot lvl5653|Kinetoplastida
Evalue1.31e-07
EggNOG OGs2CYZS@1|root,2S7GH@2759|Eukaryota,3XVTX@5653|Kinetoplastida
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5059Ggra5059Gracilaria gracilis GNS1m malegenetig00000069_pilon 362414..363057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5059.t1Ggra5059.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 362414..363057 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5059.t1.stop1Ggra5059.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 362414..362416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5059.t1.CDS1Ggra5059.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 362414..362758 -
Ggra5059.t1.CDS2Ggra5059.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 362861..362959 -
Ggra5059.t1.CDS3Ggra5059.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 363055..363057 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5059.t1.exon1Ggra5059.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 362414..362758 -
Ggra5059.t1.exon2Ggra5059.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 362861..362959 -
Ggra5059.t1.exon3Ggra5059.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 363055..363057 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5059.t1.intron1Ggra5059.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 362759..362860 -
Ggra5059.t1.intron2Ggra5059.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 362960..363054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5059.t1.start1Ggra5059.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 363055..363057 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5059.t1 ID=Ggra5059.t1|Name=Ggra5059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=149bp
MASQTDRKEEFRKYLDKGNVLSILTNVLTDLFELEPKPEDPALYLYQKIG
EVVNKDKTAPTANHTDTPQKDVEMKETAQTTAPQPTKPAETETKQQQKPA
QESVETKPAPPEQTDPPSQQPTQPEPASSAAAPAAAPAAPLSVPATTQ*
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spliced messenger RNA

>Ggra5059.t1 ID=Ggra5059.t1|Name=Ggra5059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00000069_pilon:362414..363057- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTCAAACAGATAGAAAGGAAGAATTCAGAAAGTATCTCGACAA
GGGAAATGTACTTTCAATCCTCACCAACGTTCTCACCGATCTCTTCGAGC
TCGAACCGAAACCAGAGGATCCGGCACTCTACCTCTACCAGAAGATAGGT
GAAGTCGTCAACAAAGACAAGACAGCACCCACCGCCAACCACACAGACAC
GCCTCAAAAAGACGTTGAAATGAAGGAGACGGCTCAAACAACTGCACCCC
AACCAACTAAGCCGGCTGAGACCGAAACAAAACAGCAGCAAAAACCCGCT
CAAGAAAGCGTTGAAACAAAGCCAGCGCCGCCCGAGCAGACCGATCCTCC
ATCTCAGCAGCCCACTCAACCTGAGCCTGCTTCCTCTGCCGCTGCACCTG
CTGCTGCTCCAGCAGCCCCTCTGTCGGTACCTGCTACCACTCAGTAG
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protein sequence of Ggra5059.t1

>Ggra5059.t1 ID=Ggra5059.t1|Name=Ggra5059.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=149bp
MASQTDRKEEFRKYLDKGNVLSILTNVLTDLFELEPKPEDPALYLYQKIG
EVVNKDKTAPTANHTDTPQKDVEMKETAQTTAPQPTKPAETETKQQQKPA
QESVETKPAPPEQTDPPSQQPTQPEPASSAAAPAAAPAAPLSVPATTQ*
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mRNA from alignment at tig00000069_pilon:362414..363057-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5059.t1 ID=Ggra5059.t1|Name=Ggra5059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=644bp|location=Sequence derived from alignment at tig00000069_pilon:362414..363057- (Gracilaria gracilis GNS1m male)
ATGGTACGTGTTTTCTTCCCGCGTCTGCTTCGCGCCGTCGTGCTTTGCAT
TCTGACCGTCTCACTCGTTGATCGCTTTTTTTTGCTGCTGCGCGACAGGC
CTCTCAAACAGATAGAAAGGAAGAATTCAGAAAGTATCTCGACAAGGGAA
ATGTACTTTCAATCCTCACCAACGTTCTCACCGATCTCTTCGAGCTCGTA
AGTTATCATTGCAAACACACGCACACATCATAATCCCCTCCCACACAACC
TCACAGCCTAAAGCTAACCTCTACATACACGTCATACGTACCTCCACAGG
AACCGAAACCAGAGGATCCGGCACTCTACCTCTACCAGAAGATAGGTGAA
GTCGTCAACAAAGACAAGACAGCACCCACCGCCAACCACACAGACACGCC
TCAAAAAGACGTTGAAATGAAGGAGACGGCTCAAACAACTGCACCCCAAC
CAACTAAGCCGGCTGAGACCGAAACAAAACAGCAGCAAAAACCCGCTCAA
GAAAGCGTTGAAACAAAGCCAGCGCCGCCCGAGCAGACCGATCCTCCATC
TCAGCAGCCCACTCAACCTGAGCCTGCTTCCTCTGCCGCTGCACCTGCTG
CTGCTCCAGCAGCCCCTCTGTCGGTACCTGCTACCACTCAGTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:362414..363057-

>Ggra5059.t1 ID=Ggra5059.t1|Name=Ggra5059.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00000069_pilon:362414..363057- (Gracilaria gracilis GNS1m male)
ATGGCCTCTCAAACAGATAGAAAGGAAGAATTCAGAAAGTATCTCGACAA
GGGAAATGTACTTTCAATCCTCACCAACGTTCTCACCGATCTCTTCGAGC
TCGAACCGAAACCAGAGGATCCGGCACTCTACCTCTACCAGAAGATAGGT
GAAGTCGTCAACAAAGACAAGACAGCACCCACCGCCAACCACACAGACAC
GCCTCAAAAAGACGTTGAAATGAAGGAGACGGCTCAAACAACTGCACCCC
AACCAACTAAGCCGGCTGAGACCGAAACAAAACAGCAGCAAAAACCCGCT
CAAGAAAGCGTTGAAACAAAGCCAGCGCCGCCCGAGCAGACCGATCCTCC
ATCTCAGCAGCCCACTCAACCTGAGCCTGCTTCCTCTGCCGCTGCACCTG
CTGCTGCTCCAGCAGCCCCTCTGTCGGTACCTGCTACCACTCAGTAG
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