Ggra5056.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5056.t1
Unique Name	Ggra5056.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	737

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:355612..357822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264201.pc1702
Preferred name	apbE
PFAMs	ApbE
Max annot lvl	204428\|Chlamydiae
KEGG ko	ko:K03734
Evalue	5.11e-41
EggNOG OGs	COG1477@1\|root,COG1477@2\|Bacteria,2JFQU@204428\|Chlamydiae
EC	2.7.1.180
Description	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
COG category	H
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5056	Ggra5056	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 355612..357822 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5056.t1.stop1	Ggra5056.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 355612..355614 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5056.t1.CDS1	Ggra5056.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 355612..357822 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5056.t1.exon1	Ggra5056.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 355612..357822 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5056.t1.start1	Ggra5056.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 357820..357822 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5056.t1	Ggra5056.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 355612..357822 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:355612..357822-
coding sequence from alignment at tig00000069_pilon:355612..357822-

mRNA sequence

>Ggra5056.t1 ID=Ggra5056.t1|Name=Ggra5056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=737bp
MGCVPSTPQQPVQPPPRSQRSQQPSAARKQPQAAAADAAAPAYETEVSAS
LSEGGSQSVAYHNLLNPKAISLVRSSESPLHKLVERSLQPSAPHNHDEQL
SVVRGVAMTMPYTIIVAKPDSHDHVSYLVTAVFEQYNAVLNAWNAQSEVS
SINALAPGKKMPLSPELEQLFSVVDNVFEMTDTRFDPTTAVLNIAFENCI
RDNNRPPRPDELRPYKHAVGWDRRVQRARNTVSRSNAHTIIDLDGISKGY
VIDCIVQRLLEHGYQHVYVDWAADIRAVGNHPSGRPWRAAVIQPPQLKRV
FKHWREETLPKMLTTDDISYLASLQFEGLHDISLATSGDYFCVQKYGYHH
IASASGLAVMKANAKSVASVSIAASTCAVADAVATAAMTFDSVSQAFEFS
RALCEKFPRMIYGYCVMGRDYDVHYSSIFEPLAGKSDKPSKEVASVEDGL
HRVSPTVLYKLREKLYAGRAVVVRGSKTEKVDSLASLSISPEQLVSFHTT
ISFASDDDPNCECFILLDGSTLSSGSEGISLDLSVKEVYNVEEDGAVVVA
RIDKIRLGNVKSLKVVHNGYELAKKDIQLSCARSKFELAPLVDQCKDLFR
NIASMIWIVTTTSADQQLFALTATSVSVSESMEDVLCFNILHTSTFYAAF
GGVGSEVCLHALSSELQDLASKYTAQSDVGAENAKRLGSKSLATVAGSIF
MVNDVQDHHIVFVRVRDVKFNDDVSKPLIWLQSNFV*

spliced messenger RNA

>Ggra5056.t1 ID=Ggra5056.t1|Name=Ggra5056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00000069_pilon:355612..357822- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGCGTACCGTCTACACCGCAGCAACCTGTACAGCCTCCACCTCG
TTCACAGCGTTCACAGCAGCCTTCTGCAGCTCGCAAGCAACCTCAAGCTG
CAGCTGCAGATGCCGCCGCCCCGGCGTATGAGACCGAGGTGTCTGCCAGT
TTGAGCGAAGGCGGCTCGCAGTCTGTTGCTTATCACAACCTGCTCAATCC
CAAAGCCATCAGTCTTGTCAGATCGTCTGAATCGCCGTTGCATAAGCTGG
TTGAGCGCTCGTTGCAACCGTCTGCTCCACACAATCATGATGAACAGCTC
TCCGTTGTTCGTGGCGTCGCTATGACCATGCCATATACCATCATCGTCGC
CAAGCCCGACTCGCACGACCATGTATCTTATCTGGTCACCGCCGTGTTTG
AGCAGTACAACGCTGTGTTGAATGCGTGGAATGCACAAAGCGAGGTTTCT
TCCATTAACGCGCTTGCGCCGGGAAAGAAGATGCCACTGTCGCCCGAGCT
GGAACAACTCTTTTCTGTCGTCGATAACGTCTTTGAAATGACCGATACTC
GCTTCGATCCCACCACCGCCGTGCTCAACATTGCCTTTGAGAACTGTATC
CGTGACAATAACAGGCCGCCGAGGCCGGATGAATTGCGACCTTACAAGCA
TGCTGTTGGATGGGATCGACGTGTGCAACGAGCTCGGAACACTGTGTCAC
GCTCCAATGCTCATACCATCATTGACCTCGACGGAATTTCAAAGGGCTAT
GTCATTGATTGTATTGTACAACGACTGCTCGAACATGGTTATCAGCACGT
GTACGTTGACTGGGCTGCCGATATACGTGCTGTGGGAAATCATCCTTCGG
GACGACCGTGGCGAGCGGCCGTCATCCAACCGCCTCAGCTCAAACGCGTG
TTCAAACATTGGCGTGAAGAAACTTTGCCCAAAATGTTAACCACTGACGA
CATTTCATATCTTGCTTCTTTACAATTTGAGGGTCTTCATGATATATCGT
TGGCTACTTCTGGCGACTATTTTTGTGTACAGAAATATGGATATCATCAT
ATTGCTAGCGCTAGTGGCCTTGCTGTCATGAAGGCAAACGCCAAGTCAGT
CGCTTCCGTCTCTATCGCCGCTAGCACCTGTGCGGTTGCTGATGCTGTTG
CAACCGCCGCGATGACTTTTGACTCTGTTTCGCAGGCCTTCGAGTTTAGT
AGGGCGCTGTGTGAAAAGTTTCCGCGCATGATTTATGGCTATTGTGTTAT
GGGACGCGATTATGACGTTCATTATTCTTCCATTTTTGAACCGCTTGCTG
GGAAGTCGGACAAACCTTCGAAAGAGGTTGCTTCTGTTGAAGATGGTCTC
CATCGCGTGTCACCCACCGTTCTGTACAAGCTTCGGGAGAAGCTTTATGC
GGGCAGGGCAGTTGTTGTTCGCGGTAGTAAAACGGAGAAAGTTGATTCAC
TAGCTTCTCTGTCGATATCACCGGAGCAACTTGTGAGCTTTCACACCACT
ATTTCTTTTGCATCTGATGATGATCCAAATTGTGAATGCTTCATTCTGCT
CGATGGATCCACTTTAAGCTCCGGTTCGGAAGGCATTTCACTTGATCTCT
CTGTCAAGGAAGTCTACAACGTGGAGGAGGACGGTGCTGTTGTTGTGGCG
AGGATTGACAAGATACGGCTTGGAAATGTGAAAAGTTTGAAGGTTGTTCA
TAACGGTTATGAGTTGGCCAAGAAGGACATTCAGCTGAGTTGCGCGAGGT
CCAAGTTTGAACTGGCTCCTCTCGTTGACCAGTGCAAGGACCTTTTCAGA
AATATTGCTTCTATGATATGGATTGTTACCACCACCTCGGCTGATCAGCA
ACTCTTTGCACTGACTGCTACGTCTGTAAGTGTTTCGGAAAGTATGGAGG
ACGTCTTATGTTTTAATATATTGCATACGAGTACATTCTATGCGGCTTTT
GGAGGCGTCGGATCGGAAGTTTGTCTGCATGCCCTGTCGAGTGAATTGCA
AGATTTGGCTTCGAAGTACACTGCTCAAAGTGATGTAGGCGCGGAGAATG
CCAAGCGCTTGGGGTCGAAGAGTCTGGCGACTGTTGCGGGCTCGATTTTC
ATGGTGAATGATGTTCAAGATCATCATATCGTCTTTGTTCGCGTGCGTGA
CGTGAAGTTCAATGATGATGTTAGCAAGCCGCTGATTTGGCTACAGAGCA
ATTTTGTGTGA

protein sequence of Ggra5056.t1

>Ggra5056.t1 ID=Ggra5056.t1|Name=Ggra5056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=737bp
MGCVPSTPQQPVQPPPRSQRSQQPSAARKQPQAAAADAAAPAYETEVSAS
LSEGGSQSVAYHNLLNPKAISLVRSSESPLHKLVERSLQPSAPHNHDEQL
SVVRGVAMTMPYTIIVAKPDSHDHVSYLVTAVFEQYNAVLNAWNAQSEVS
SINALAPGKKMPLSPELEQLFSVVDNVFEMTDTRFDPTTAVLNIAFENCI
RDNNRPPRPDELRPYKHAVGWDRRVQRARNTVSRSNAHTIIDLDGISKGY
VIDCIVQRLLEHGYQHVYVDWAADIRAVGNHPSGRPWRAAVIQPPQLKRV
FKHWREETLPKMLTTDDISYLASLQFEGLHDISLATSGDYFCVQKYGYHH
IASASGLAVMKANAKSVASVSIAASTCAVADAVATAAMTFDSVSQAFEFS
RALCEKFPRMIYGYCVMGRDYDVHYSSIFEPLAGKSDKPSKEVASVEDGL
HRVSPTVLYKLREKLYAGRAVVVRGSKTEKVDSLASLSISPEQLVSFHTT
ISFASDDDPNCECFILLDGSTLSSGSEGISLDLSVKEVYNVEEDGAVVVA
RIDKIRLGNVKSLKVVHNGYELAKKDIQLSCARSKFELAPLVDQCKDLFR
NIASMIWIVTTTSADQQLFALTATSVSVSESMEDVLCFNILHTSTFYAAF
GGVGSEVCLHALSSELQDLASKYTAQSDVGAENAKRLGSKSLATVAGSIF
MVNDVQDHHIVFVRVRDVKFNDDVSKPLIWLQSNFV*

mRNA from alignment at tig00000069_pilon:355612..357822-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5056.t1 ID=Ggra5056.t1|Name=Ggra5056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00000069_pilon:355612..357822- (Gracilaria gracilis GNS1m male)
ATGGGGTGCGTACCGTCTACACCGCAGCAACCTGTACAGCCTCCACCTCG
TTCACAGCGTTCACAGCAGCCTTCTGCAGCTCGCAAGCAACCTCAAGCTG
CAGCTGCAGATGCCGCCGCCCCGGCGTATGAGACCGAGGTGTCTGCCAGT
TTGAGCGAAGGCGGCTCGCAGTCTGTTGCTTATCACAACCTGCTCAATCC
CAAAGCCATCAGTCTTGTCAGATCGTCTGAATCGCCGTTGCATAAGCTGG
TTGAGCGCTCGTTGCAACCGTCTGCTCCACACAATCATGATGAACAGCTC
TCCGTTGTTCGTGGCGTCGCTATGACCATGCCATATACCATCATCGTCGC
CAAGCCCGACTCGCACGACCATGTATCTTATCTGGTCACCGCCGTGTTTG
AGCAGTACAACGCTGTGTTGAATGCGTGGAATGCACAAAGCGAGGTTTCT
TCCATTAACGCGCTTGCGCCGGGAAAGAAGATGCCACTGTCGCCCGAGCT
GGAACAACTCTTTTCTGTCGTCGATAACGTCTTTGAAATGACCGATACTC
GCTTCGATCCCACCACCGCCGTGCTCAACATTGCCTTTGAGAACTGTATC
CGTGACAATAACAGGCCGCCGAGGCCGGATGAATTGCGACCTTACAAGCA
TGCTGTTGGATGGGATCGACGTGTGCAACGAGCTCGGAACACTGTGTCAC
GCTCCAATGCTCATACCATCATTGACCTCGACGGAATTTCAAAGGGCTAT
GTCATTGATTGTATTGTACAACGACTGCTCGAACATGGTTATCAGCACGT
GTACGTTGACTGGGCTGCCGATATACGTGCTGTGGGAAATCATCCTTCGG
GACGACCGTGGCGAGCGGCCGTCATCCAACCGCCTCAGCTCAAACGCGTG
TTCAAACATTGGCGTGAAGAAACTTTGCCCAAAATGTTAACCACTGACGA
CATTTCATATCTTGCTTCTTTACAATTTGAGGGTCTTCATGATATATCGT
TGGCTACTTCTGGCGACTATTTTTGTGTACAGAAATATGGATATCATCAT
ATTGCTAGCGCTAGTGGCCTTGCTGTCATGAAGGCAAACGCCAAGTCAGT
CGCTTCCGTCTCTATCGCCGCTAGCACCTGTGCGGTTGCTGATGCTGTTG
CAACCGCCGCGATGACTTTTGACTCTGTTTCGCAGGCCTTCGAGTTTAGT
AGGGCGCTGTGTGAAAAGTTTCCGCGCATGATTTATGGCTATTGTGTTAT
GGGACGCGATTATGACGTTCATTATTCTTCCATTTTTGAACCGCTTGCTG
GGAAGTCGGACAAACCTTCGAAAGAGGTTGCTTCTGTTGAAGATGGTCTC
CATCGCGTGTCACCCACCGTTCTGTACAAGCTTCGGGAGAAGCTTTATGC
GGGCAGGGCAGTTGTTGTTCGCGGTAGTAAAACGGAGAAAGTTGATTCAC
TAGCTTCTCTGTCGATATCACCGGAGCAACTTGTGAGCTTTCACACCACT
ATTTCTTTTGCATCTGATGATGATCCAAATTGTGAATGCTTCATTCTGCT
CGATGGATCCACTTTAAGCTCCGGTTCGGAAGGCATTTCACTTGATCTCT
CTGTCAAGGAAGTCTACAACGTGGAGGAGGACGGTGCTGTTGTTGTGGCG
AGGATTGACAAGATACGGCTTGGAAATGTGAAAAGTTTGAAGGTTGTTCA
TAACGGTTATGAGTTGGCCAAGAAGGACATTCAGCTGAGTTGCGCGAGGT
CCAAGTTTGAACTGGCTCCTCTCGTTGACCAGTGCAAGGACCTTTTCAGA
AATATTGCTTCTATGATATGGATTGTTACCACCACCTCGGCTGATCAGCA
ACTCTTTGCACTGACTGCTACGTCTGTAAGTGTTTCGGAAAGTATGGAGG
ACGTCTTATGTTTTAATATATTGCATACGAGTACATTCTATGCGGCTTTT
GGAGGCGTCGGATCGGAAGTTTGTCTGCATGCCCTGTCGAGTGAATTGCA
AGATTTGGCTTCGAAGTACACTGCTCAAAGTGATGTAGGCGCGGAGAATG
CCAAGCGCTTGGGGTCGAAGAGTCTGGCGACTGTTGCGGGCTCGATTTTC
ATGGTGAATGATGTTCAAGATCATCATATCGTCTTTGTTCGCGTGCGTGA
CGTGAAGTTCAATGATGATGTTAGCAAGCCGCTGATTTGGCTACAGAGCA
ATTTTGTGTGA

Coding sequence (CDS) from alignment at tig00000069_pilon:355612..357822-

>Ggra5056.t1 ID=Ggra5056.t1|Name=Ggra5056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2211bp|location=Sequence derived from alignment at tig00000069_pilon:355612..357822- (Gracilaria gracilis GNS1m male)
ATGGGGTGCGTACCGTCTACACCGCAGCAACCTGTACAGCCTCCACCTCG
TTCACAGCGTTCACAGCAGCCTTCTGCAGCTCGCAAGCAACCTCAAGCTG
CAGCTGCAGATGCCGCCGCCCCGGCGTATGAGACCGAGGTGTCTGCCAGT
TTGAGCGAAGGCGGCTCGCAGTCTGTTGCTTATCACAACCTGCTCAATCC
CAAAGCCATCAGTCTTGTCAGATCGTCTGAATCGCCGTTGCATAAGCTGG
TTGAGCGCTCGTTGCAACCGTCTGCTCCACACAATCATGATGAACAGCTC
TCCGTTGTTCGTGGCGTCGCTATGACCATGCCATATACCATCATCGTCGC
CAAGCCCGACTCGCACGACCATGTATCTTATCTGGTCACCGCCGTGTTTG
AGCAGTACAACGCTGTGTTGAATGCGTGGAATGCACAAAGCGAGGTTTCT
TCCATTAACGCGCTTGCGCCGGGAAAGAAGATGCCACTGTCGCCCGAGCT
GGAACAACTCTTTTCTGTCGTCGATAACGTCTTTGAAATGACCGATACTC
GCTTCGATCCCACCACCGCCGTGCTCAACATTGCCTTTGAGAACTGTATC
CGTGACAATAACAGGCCGCCGAGGCCGGATGAATTGCGACCTTACAAGCA
TGCTGTTGGATGGGATCGACGTGTGCAACGAGCTCGGAACACTGTGTCAC
GCTCCAATGCTCATACCATCATTGACCTCGACGGAATTTCAAAGGGCTAT
GTCATTGATTGTATTGTACAACGACTGCTCGAACATGGTTATCAGCACGT
GTACGTTGACTGGGCTGCCGATATACGTGCTGTGGGAAATCATCCTTCGG
GACGACCGTGGCGAGCGGCCGTCATCCAACCGCCTCAGCTCAAACGCGTG
TTCAAACATTGGCGTGAAGAAACTTTGCCCAAAATGTTAACCACTGACGA
CATTTCATATCTTGCTTCTTTACAATTTGAGGGTCTTCATGATATATCGT
TGGCTACTTCTGGCGACTATTTTTGTGTACAGAAATATGGATATCATCAT
ATTGCTAGCGCTAGTGGCCTTGCTGTCATGAAGGCAAACGCCAAGTCAGT
CGCTTCCGTCTCTATCGCCGCTAGCACCTGTGCGGTTGCTGATGCTGTTG
CAACCGCCGCGATGACTTTTGACTCTGTTTCGCAGGCCTTCGAGTTTAGT
AGGGCGCTGTGTGAAAAGTTTCCGCGCATGATTTATGGCTATTGTGTTAT
GGGACGCGATTATGACGTTCATTATTCTTCCATTTTTGAACCGCTTGCTG
GGAAGTCGGACAAACCTTCGAAAGAGGTTGCTTCTGTTGAAGATGGTCTC
CATCGCGTGTCACCCACCGTTCTGTACAAGCTTCGGGAGAAGCTTTATGC
GGGCAGGGCAGTTGTTGTTCGCGGTAGTAAAACGGAGAAAGTTGATTCAC
TAGCTTCTCTGTCGATATCACCGGAGCAACTTGTGAGCTTTCACACCACT
ATTTCTTTTGCATCTGATGATGATCCAAATTGTGAATGCTTCATTCTGCT
CGATGGATCCACTTTAAGCTCCGGTTCGGAAGGCATTTCACTTGATCTCT
CTGTCAAGGAAGTCTACAACGTGGAGGAGGACGGTGCTGTTGTTGTGGCG
AGGATTGACAAGATACGGCTTGGAAATGTGAAAAGTTTGAAGGTTGTTCA
TAACGGTTATGAGTTGGCCAAGAAGGACATTCAGCTGAGTTGCGCGAGGT
CCAAGTTTGAACTGGCTCCTCTCGTTGACCAGTGCAAGGACCTTTTCAGA
AATATTGCTTCTATGATATGGATTGTTACCACCACCTCGGCTGATCAGCA
ACTCTTTGCACTGACTGCTACGTCTGTAAGTGTTTCGGAAAGTATGGAGG
ACGTCTTATGTTTTAATATATTGCATACGAGTACATTCTATGCGGCTTTT
GGAGGCGTCGGATCGGAAGTTTGTCTGCATGCCCTGTCGAGTGAATTGCA
AGATTTGGCTTCGAAGTACACTGCTCAAAGTGATGTAGGCGCGGAGAATG
CCAAGCGCTTGGGGTCGAAGAGTCTGGCGACTGTTGCGGGCTCGATTTTC
ATGGTGAATGATGTTCAAGATCATCATATCGTCTTTGTTCGCGTGCGTGA
CGTGAAGTTCAATGATGATGTTAGCAAGCCGCTGATTTGGCTACAGAGCA
ATTTTGTGTGA