Ggra5054.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5054.t1
Unique Name	Ggra5054.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	715

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:351181..353325 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0T2Z7
PFAMs	DEP,Pyr_redox_2,Pyr_redox_dim
Max annot lvl	2836\|Bacillariophyta
Evalue	1.48e-245
EggNOG OGs	COG1249@1\|root,KOG1335@2759\|Eukaryota,2XE28@2836\|Bacillariophyta
Description	Glucose inhibited division protein A
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5054	Ggra5054	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 351181..353325 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5054.t1.stop1	Ggra5054.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 351181..351183 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5054.t1.CDS1	Ggra5054.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 351181..353325 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5054.t1.exon1	Ggra5054.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 351181..353325 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5054.t1.start1	Ggra5054.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 353323..353325 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5054.t1	Ggra5054.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 351181..353325 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:351181..353325-
coding sequence from alignment at tig00000069_pilon:351181..353325-

mRNA sequence

>Ggra5054.t1 ID=Ggra5054.t1|Name=Ggra5054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=715bp
MQPPSRSSSFVSPLIRSLFSRRSFRVSSSDDAGVCETPFRMSSAAVSTDA
SALDLAELASRFKNNVTIKDRRYRLQTYKKCFVGSEAVQWLVTSGTAQSR
ADAIRLGLLMQEAGIIEHCLRDHDFKDEELFYKFIEDSERGGVPKTDGRL
VTWADFVQPPFSAGRNLQPKVPESNDESTNTALEVEQSVWPLDEENIRLL
DNVHPPEWIEPVYNGAYNLVVIGAGAGGLVTSSGAAGLGAKVALIEANRL
GGDCLNVGCVPSKSLIHAANLAHTLRDQEHLAEAGLAFDGPVKIDFGKTM
KRLRRVRADISKADAATRYTRKLGVDVYFGYAKFTSDSTVVVNGKTLTFR
KAIIATGGYPAIPPIPGLRELHEKSVKDMDKKPHTAIMTNETFFNLTELP
RRLGVIGTGVIGMELGQAMQRLGSSVVMFGRSGQVLPKEDKDLSALIKEQ
MMNDGVSFSLNVATYEVVEHTGKVSAEGYEEIRMITEEDGERKEYLFDAM
LVATGRKPNVDGLNLKVAGVEYDNKRGLKVNDLLQTTNPRIYGVGDVCSV
YKFTHAADFMARMVIRNALFFGKDKMSNLLIPYATFTSPEIAHVGLYESD
MKEKGIRYKTFEKHFDDNDRAICDGTTVGMVRVHVEEKSDSILGASIVGA
GAGNMISEITLAMQSKTGLGALASVIHPYPTTAEAVRQAGDLFNRTRLTN
TVKQLLRGIVRVQR*

spliced messenger RNA

>Ggra5054.t1 ID=Ggra5054.t1|Name=Ggra5054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2145bp|location=Sequence derived from alignment at tig00000069_pilon:351181..353325- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGCCGTCGAGAAGCTCTTCTTTTGTATCACCGCTCATAAGATC
TCTGTTTTCCAGAAGGTCGTTCCGAGTCTCCTCTTCCGACGACGCTGGCG
TCTGCGAGACGCCGTTCAGAATGTCTTCTGCTGCCGTCAGTACCGATGCG
TCCGCGCTGGACTTGGCCGAGCTGGCCTCTCGTTTCAAGAACAATGTCAC
TATAAAGGATCGCCGCTATAGACTGCAGACTTACAAGAAATGTTTCGTGG
GTTCTGAGGCTGTGCAATGGCTGGTTACCAGTGGAACTGCCCAATCAAGA
GCCGATGCAATCAGACTGGGCTTGCTCATGCAGGAGGCTGGTATCATTGA
ACATTGTCTGAGGGATCATGATTTCAAGGATGAGGAGCTGTTTTACAAGT
TCATCGAAGACTCTGAGCGTGGAGGAGTGCCCAAGACAGACGGCCGTCTG
GTCACATGGGCCGATTTTGTACAACCCCCTTTCAGCGCTGGTCGCAATCT
TCAGCCAAAGGTTCCCGAATCAAACGATGAAAGCACTAACACTGCCTTGG
AGGTGGAACAGTCGGTGTGGCCCTTGGATGAAGAAAACATCAGATTGTTA
GATAATGTACATCCACCAGAATGGATAGAACCTGTTTATAATGGCGCTTA
TAATCTTGTGGTGATTGGAGCTGGCGCTGGTGGACTTGTGACGTCATCGG
GTGCAGCTGGGTTAGGTGCGAAGGTGGCACTCATTGAGGCGAATCGCCTT
GGTGGTGATTGCCTTAACGTTGGATGTGTTCCTTCCAAATCTCTAATTCA
TGCTGCGAATCTGGCGCATACACTTAGAGACCAGGAGCATTTGGCCGAGG
CTGGGCTTGCATTTGATGGGCCTGTGAAGATCGACTTTGGGAAGACGATG
AAGCGTCTTCGACGAGTTCGTGCGGATATTAGCAAAGCTGATGCTGCCAC
TCGTTACACAAGGAAGCTTGGGGTTGATGTTTATTTCGGGTACGCAAAGT
TCACATCCGACTCCACTGTGGTGGTGAATGGAAAGACTTTGACGTTTAGG
AAGGCTATCATTGCTACTGGCGGTTATCCTGCGATTCCGCCGATTCCTGG
TCTTCGAGAGTTACATGAGAAGAGCGTGAAGGACATGGATAAGAAGCCAC
ACACTGCGATTATGACTAATGAAACTTTCTTCAATCTTACTGAACTGCCA
AGACGTCTTGGCGTTATCGGAACTGGAGTGATTGGGATGGAGCTTGGTCA
GGCCATGCAGAGACTTGGGTCGTCGGTGGTTATGTTTGGTCGATCGGGGC
AGGTGCTACCGAAGGAAGACAAGGATCTGAGCGCGCTTATCAAGGAGCAG
ATGATGAACGATGGGGTATCGTTTAGCCTGAACGTGGCGACGTACGAGGT
GGTGGAGCATACCGGCAAGGTTTCGGCTGAGGGGTATGAGGAGATCCGAA
TGATTACTGAGGAGGATGGGGAGCGGAAGGAATACTTGTTTGATGCGATG
CTGGTGGCCACTGGGAGGAAGCCAAACGTGGATGGCTTGAATCTAAAGGT
TGCTGGCGTTGAATACGATAACAAACGCGGGCTGAAGGTGAACGATTTGT
TGCAAACTACCAACCCCAGGATTTATGGAGTGGGAGATGTGTGCAGTGTG
TACAAGTTCACGCACGCTGCGGACTTTATGGCGAGAATGGTGATTCGAAA
CGCTCTATTCTTCGGGAAAGATAAGATGTCGAACCTTCTCATCCCGTATG
CGACGTTCACGTCACCAGAGATTGCTCATGTGGGACTGTACGAATCTGAC
ATGAAGGAGAAGGGAATCAGATACAAGACGTTTGAAAAGCACTTCGATGA
CAATGACCGTGCTATATGTGACGGGACTACGGTTGGGATGGTGCGCGTTC
ATGTTGAAGAAAAGTCGGACTCTATATTAGGCGCTTCGATTGTTGGAGCT
GGGGCGGGTAACATGATCAGTGAGATTACGCTCGCCATGCAGTCGAAGAC
GGGATTGGGGGCGCTTGCTTCGGTGATCCACCCGTACCCTACGACTGCTG
AGGCTGTTCGACAGGCTGGAGATCTATTCAACCGCACTCGTTTAACTAAT
ACTGTGAAGCAATTACTTCGTGGTATTGTGCGTGTACAACGTTAG

protein sequence of Ggra5054.t1

>Ggra5054.t1 ID=Ggra5054.t1|Name=Ggra5054.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=715bp
MQPPSRSSSFVSPLIRSLFSRRSFRVSSSDDAGVCETPFRMSSAAVSTDA
SALDLAELASRFKNNVTIKDRRYRLQTYKKCFVGSEAVQWLVTSGTAQSR
ADAIRLGLLMQEAGIIEHCLRDHDFKDEELFYKFIEDSERGGVPKTDGRL
VTWADFVQPPFSAGRNLQPKVPESNDESTNTALEVEQSVWPLDEENIRLL
DNVHPPEWIEPVYNGAYNLVVIGAGAGGLVTSSGAAGLGAKVALIEANRL
GGDCLNVGCVPSKSLIHAANLAHTLRDQEHLAEAGLAFDGPVKIDFGKTM
KRLRRVRADISKADAATRYTRKLGVDVYFGYAKFTSDSTVVVNGKTLTFR
KAIIATGGYPAIPPIPGLRELHEKSVKDMDKKPHTAIMTNETFFNLTELP
RRLGVIGTGVIGMELGQAMQRLGSSVVMFGRSGQVLPKEDKDLSALIKEQ
MMNDGVSFSLNVATYEVVEHTGKVSAEGYEEIRMITEEDGERKEYLFDAM
LVATGRKPNVDGLNLKVAGVEYDNKRGLKVNDLLQTTNPRIYGVGDVCSV
YKFTHAADFMARMVIRNALFFGKDKMSNLLIPYATFTSPEIAHVGLYESD
MKEKGIRYKTFEKHFDDNDRAICDGTTVGMVRVHVEEKSDSILGASIVGA
GAGNMISEITLAMQSKTGLGALASVIHPYPTTAEAVRQAGDLFNRTRLTN
TVKQLLRGIVRVQR*

mRNA from alignment at tig00000069_pilon:351181..353325-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5054.t1 ID=Ggra5054.t1|Name=Ggra5054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2145bp|location=Sequence derived from alignment at tig00000069_pilon:351181..353325- (Gracilaria gracilis GNS1m male)
ATGCAGCCGCCGTCGAGAAGCTCTTCTTTTGTATCACCGCTCATAAGATC
TCTGTTTTCCAGAAGGTCGTTCCGAGTCTCCTCTTCCGACGACGCTGGCG
TCTGCGAGACGCCGTTCAGAATGTCTTCTGCTGCCGTCAGTACCGATGCG
TCCGCGCTGGACTTGGCCGAGCTGGCCTCTCGTTTCAAGAACAATGTCAC
TATAAAGGATCGCCGCTATAGACTGCAGACTTACAAGAAATGTTTCGTGG
GTTCTGAGGCTGTGCAATGGCTGGTTACCAGTGGAACTGCCCAATCAAGA
GCCGATGCAATCAGACTGGGCTTGCTCATGCAGGAGGCTGGTATCATTGA
ACATTGTCTGAGGGATCATGATTTCAAGGATGAGGAGCTGTTTTACAAGT
TCATCGAAGACTCTGAGCGTGGAGGAGTGCCCAAGACAGACGGCCGTCTG
GTCACATGGGCCGATTTTGTACAACCCCCTTTCAGCGCTGGTCGCAATCT
TCAGCCAAAGGTTCCCGAATCAAACGATGAAAGCACTAACACTGCCTTGG
AGGTGGAACAGTCGGTGTGGCCCTTGGATGAAGAAAACATCAGATTGTTA
GATAATGTACATCCACCAGAATGGATAGAACCTGTTTATAATGGCGCTTA
TAATCTTGTGGTGATTGGAGCTGGCGCTGGTGGACTTGTGACGTCATCGG
GTGCAGCTGGGTTAGGTGCGAAGGTGGCACTCATTGAGGCGAATCGCCTT
GGTGGTGATTGCCTTAACGTTGGATGTGTTCCTTCCAAATCTCTAATTCA
TGCTGCGAATCTGGCGCATACACTTAGAGACCAGGAGCATTTGGCCGAGG
CTGGGCTTGCATTTGATGGGCCTGTGAAGATCGACTTTGGGAAGACGATG
AAGCGTCTTCGACGAGTTCGTGCGGATATTAGCAAAGCTGATGCTGCCAC
TCGTTACACAAGGAAGCTTGGGGTTGATGTTTATTTCGGGTACGCAAAGT
TCACATCCGACTCCACTGTGGTGGTGAATGGAAAGACTTTGACGTTTAGG
AAGGCTATCATTGCTACTGGCGGTTATCCTGCGATTCCGCCGATTCCTGG
TCTTCGAGAGTTACATGAGAAGAGCGTGAAGGACATGGATAAGAAGCCAC
ACACTGCGATTATGACTAATGAAACTTTCTTCAATCTTACTGAACTGCCA
AGACGTCTTGGCGTTATCGGAACTGGAGTGATTGGGATGGAGCTTGGTCA
GGCCATGCAGAGACTTGGGTCGTCGGTGGTTATGTTTGGTCGATCGGGGC
AGGTGCTACCGAAGGAAGACAAGGATCTGAGCGCGCTTATCAAGGAGCAG
ATGATGAACGATGGGGTATCGTTTAGCCTGAACGTGGCGACGTACGAGGT
GGTGGAGCATACCGGCAAGGTTTCGGCTGAGGGGTATGAGGAGATCCGAA
TGATTACTGAGGAGGATGGGGAGCGGAAGGAATACTTGTTTGATGCGATG
CTGGTGGCCACTGGGAGGAAGCCAAACGTGGATGGCTTGAATCTAAAGGT
TGCTGGCGTTGAATACGATAACAAACGCGGGCTGAAGGTGAACGATTTGT
TGCAAACTACCAACCCCAGGATTTATGGAGTGGGAGATGTGTGCAGTGTG
TACAAGTTCACGCACGCTGCGGACTTTATGGCGAGAATGGTGATTCGAAA
CGCTCTATTCTTCGGGAAAGATAAGATGTCGAACCTTCTCATCCCGTATG
CGACGTTCACGTCACCAGAGATTGCTCATGTGGGACTGTACGAATCTGAC
ATGAAGGAGAAGGGAATCAGATACAAGACGTTTGAAAAGCACTTCGATGA
CAATGACCGTGCTATATGTGACGGGACTACGGTTGGGATGGTGCGCGTTC
ATGTTGAAGAAAAGTCGGACTCTATATTAGGCGCTTCGATTGTTGGAGCT
GGGGCGGGTAACATGATCAGTGAGATTACGCTCGCCATGCAGTCGAAGAC
GGGATTGGGGGCGCTTGCTTCGGTGATCCACCCGTACCCTACGACTGCTG
AGGCTGTTCGACAGGCTGGAGATCTATTCAACCGCACTCGTTTAACTAAT
ACTGTGAAGCAATTACTTCGTGGTATTGTGCGTGTACAACGTTAG

Coding sequence (CDS) from alignment at tig00000069_pilon:351181..353325-

>Ggra5054.t1 ID=Ggra5054.t1|Name=Ggra5054.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2145bp|location=Sequence derived from alignment at tig00000069_pilon:351181..353325- (Gracilaria gracilis GNS1m male)
ATGCAGCCGCCGTCGAGAAGCTCTTCTTTTGTATCACCGCTCATAAGATC
TCTGTTTTCCAGAAGGTCGTTCCGAGTCTCCTCTTCCGACGACGCTGGCG
TCTGCGAGACGCCGTTCAGAATGTCTTCTGCTGCCGTCAGTACCGATGCG
TCCGCGCTGGACTTGGCCGAGCTGGCCTCTCGTTTCAAGAACAATGTCAC
TATAAAGGATCGCCGCTATAGACTGCAGACTTACAAGAAATGTTTCGTGG
GTTCTGAGGCTGTGCAATGGCTGGTTACCAGTGGAACTGCCCAATCAAGA
GCCGATGCAATCAGACTGGGCTTGCTCATGCAGGAGGCTGGTATCATTGA
ACATTGTCTGAGGGATCATGATTTCAAGGATGAGGAGCTGTTTTACAAGT
TCATCGAAGACTCTGAGCGTGGAGGAGTGCCCAAGACAGACGGCCGTCTG
GTCACATGGGCCGATTTTGTACAACCCCCTTTCAGCGCTGGTCGCAATCT
TCAGCCAAAGGTTCCCGAATCAAACGATGAAAGCACTAACACTGCCTTGG
AGGTGGAACAGTCGGTGTGGCCCTTGGATGAAGAAAACATCAGATTGTTA
GATAATGTACATCCACCAGAATGGATAGAACCTGTTTATAATGGCGCTTA
TAATCTTGTGGTGATTGGAGCTGGCGCTGGTGGACTTGTGACGTCATCGG
GTGCAGCTGGGTTAGGTGCGAAGGTGGCACTCATTGAGGCGAATCGCCTT
GGTGGTGATTGCCTTAACGTTGGATGTGTTCCTTCCAAATCTCTAATTCA
TGCTGCGAATCTGGCGCATACACTTAGAGACCAGGAGCATTTGGCCGAGG
CTGGGCTTGCATTTGATGGGCCTGTGAAGATCGACTTTGGGAAGACGATG
AAGCGTCTTCGACGAGTTCGTGCGGATATTAGCAAAGCTGATGCTGCCAC
TCGTTACACAAGGAAGCTTGGGGTTGATGTTTATTTCGGGTACGCAAAGT
TCACATCCGACTCCACTGTGGTGGTGAATGGAAAGACTTTGACGTTTAGG
AAGGCTATCATTGCTACTGGCGGTTATCCTGCGATTCCGCCGATTCCTGG
TCTTCGAGAGTTACATGAGAAGAGCGTGAAGGACATGGATAAGAAGCCAC
ACACTGCGATTATGACTAATGAAACTTTCTTCAATCTTACTGAACTGCCA
AGACGTCTTGGCGTTATCGGAACTGGAGTGATTGGGATGGAGCTTGGTCA
GGCCATGCAGAGACTTGGGTCGTCGGTGGTTATGTTTGGTCGATCGGGGC
AGGTGCTACCGAAGGAAGACAAGGATCTGAGCGCGCTTATCAAGGAGCAG
ATGATGAACGATGGGGTATCGTTTAGCCTGAACGTGGCGACGTACGAGGT
GGTGGAGCATACCGGCAAGGTTTCGGCTGAGGGGTATGAGGAGATCCGAA
TGATTACTGAGGAGGATGGGGAGCGGAAGGAATACTTGTTTGATGCGATG
CTGGTGGCCACTGGGAGGAAGCCAAACGTGGATGGCTTGAATCTAAAGGT
TGCTGGCGTTGAATACGATAACAAACGCGGGCTGAAGGTGAACGATTTGT
TGCAAACTACCAACCCCAGGATTTATGGAGTGGGAGATGTGTGCAGTGTG
TACAAGTTCACGCACGCTGCGGACTTTATGGCGAGAATGGTGATTCGAAA
CGCTCTATTCTTCGGGAAAGATAAGATGTCGAACCTTCTCATCCCGTATG
CGACGTTCACGTCACCAGAGATTGCTCATGTGGGACTGTACGAATCTGAC
ATGAAGGAGAAGGGAATCAGATACAAGACGTTTGAAAAGCACTTCGATGA
CAATGACCGTGCTATATGTGACGGGACTACGGTTGGGATGGTGCGCGTTC
ATGTTGAAGAAAAGTCGGACTCTATATTAGGCGCTTCGATTGTTGGAGCT
GGGGCGGGTAACATGATCAGTGAGATTACGCTCGCCATGCAGTCGAAGAC
GGGATTGGGGGCGCTTGCTTCGGTGATCCACCCGTACCCTACGACTGCTG
AGGCTGTTCGACAGGCTGGAGATCTATTCAACCGCACTCGTTTAACTAAT
ACTGTGAAGCAATTACTTCGTGGTATTGTGCGTGTACAACGTTAG