Ggra505.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra505.t1
Unique NameGgra505.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000238_piloncontigtig00000238_pilon:46947..47468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706576.1
PFAMsEpimerase,NAD_binding_10,NmrA,RmlD_sub_bind
Max annot lvl2759|Eukaryota
KEGG rclassRC00299
KEGG koko:K01593,ko:K03953
KEGG TC3.D.1.6
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00190,ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04714,ko04723,ko04726,ko04728,ko04932,ko05010,ko05012,ko05016,ko05030,ko05031,ko05034,map00190,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04714,map04723,map04726,map04728,map04932,map05010,map05012,map05016,map05030,map05031,map05034
KEGG ModuleM00037,M00042,M00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016020,GO:0016491,GO:0016651,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0070469,GO:0071704,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1990204
Evalue2.06e-40
EggNOG OGsCOG0702@1|root,KOG2865@2759|Eukaryota
EC4.1.1.105,4.1.1.28
DescriptionNADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra505Ggra505Gracilaria gracilis GNS1m malegenetig00000238_pilon 46947..47468 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra505.t1.stop1Ggra505.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000238_pilon 46947..46949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra505.t1.CDS1Ggra505.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000238_pilon 46947..47468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra505.t1.exon1Ggra505.t1.exon1Gracilaria gracilis GNS1m maleexontig00000238_pilon 46947..47468 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra505.t1.start1Ggra505.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000238_pilon 47466..47468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra505.t1Ggra505.t1Gracilaria gracilis GNS1m malepolypeptidetig00000238_pilon 46947..47468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra505.t1 ID=Ggra505.t1|Name=Ggra505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MGDLGQVVPLPFELRDVQSLRHAVRRAHVVINLLGKNYPTPNYSFADLHV
ERLHKIVQIAREERVPHFVHVSTAPPQQPCHSEWLSTKKQGEALVRDAYP
SATIVRPADMFGAEDRLLTRMASNLVRMPLISLAEHGDSRVQPVWVNVAR
RADVVWDESEETPISQVTSRIST*
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spliced messenger RNA

>Ggra505.t1 ID=Ggra505.t1|Name=Ggra505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000238_pilon:46947..47468- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATCTGGGGCAGGTCGTGCCGCTGCCCTTTGAGCTGCGCGACGT
GCAGTCGCTGCGCCACGCCGTGCGCCGCGCGCATGTCGTCATCAACCTGC
TCGGAAAGAACTACCCCACCCCCAACTACTCCTTTGCCGACCTTCACGTG
GAGCGCCTGCACAAGATCGTCCAAATCGCGCGGGAGGAACGCGTGCCGCA
CTTTGTGCACGTCTCCACTGCCCCGCCGCAGCAGCCGTGCCACAGCGAGT
GGCTGTCCACCAAGAAGCAAGGCGAAGCGTTGGTACGCGACGCGTATCCG
TCCGCCACCATCGTGCGTCCGGCCGACATGTTCGGCGCGGAGGACCGCTT
GCTCACGCGCATGGCCTCCAACCTGGTTAGGATGCCGCTCATCTCGCTGG
CGGAGCACGGCGACAGTCGCGTGCAGCCCGTGTGGGTCAACGTCGCTAGG
AGAGCGGATGTTGTGTGGGATGAATCAGAGGAGACGCCGATCTCGCAAGT
CACGTCGCGTATTTCAACGTAA
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protein sequence of Ggra505.t1

>Ggra505.t1 ID=Ggra505.t1|Name=Ggra505.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MGDLGQVVPLPFELRDVQSLRHAVRRAHVVINLLGKNYPTPNYSFADLHV
ERLHKIVQIAREERVPHFVHVSTAPPQQPCHSEWLSTKKQGEALVRDAYP
SATIVRPADMFGAEDRLLTRMASNLVRMPLISLAEHGDSRVQPVWVNVAR
RADVVWDESEETPISQVTSRIST*
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mRNA from alignment at tig00000238_pilon:46947..47468-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra505.t1 ID=Ggra505.t1|Name=Ggra505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000238_pilon:46947..47468- (Gracilaria gracilis GNS1m male)
ATGGGCGATCTGGGGCAGGTCGTGCCGCTGCCCTTTGAGCTGCGCGACGT
GCAGTCGCTGCGCCACGCCGTGCGCCGCGCGCATGTCGTCATCAACCTGC
TCGGAAAGAACTACCCCACCCCCAACTACTCCTTTGCCGACCTTCACGTG
GAGCGCCTGCACAAGATCGTCCAAATCGCGCGGGAGGAACGCGTGCCGCA
CTTTGTGCACGTCTCCACTGCCCCGCCGCAGCAGCCGTGCCACAGCGAGT
GGCTGTCCACCAAGAAGCAAGGCGAAGCGTTGGTACGCGACGCGTATCCG
TCCGCCACCATCGTGCGTCCGGCCGACATGTTCGGCGCGGAGGACCGCTT
GCTCACGCGCATGGCCTCCAACCTGGTTAGGATGCCGCTCATCTCGCTGG
CGGAGCACGGCGACAGTCGCGTGCAGCCCGTGTGGGTCAACGTCGCTAGG
AGAGCGGATGTTGTGTGGGATGAATCAGAGGAGACGCCGATCTCGCAAGT
CACGTCGCGTATTTCAACGTAA
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Coding sequence (CDS) from alignment at tig00000238_pilon:46947..47468-

>Ggra505.t1 ID=Ggra505.t1|Name=Ggra505.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000238_pilon:46947..47468- (Gracilaria gracilis GNS1m male)
ATGGGCGATCTGGGGCAGGTCGTGCCGCTGCCCTTTGAGCTGCGCGACGT
GCAGTCGCTGCGCCACGCCGTGCGCCGCGCGCATGTCGTCATCAACCTGC
TCGGAAAGAACTACCCCACCCCCAACTACTCCTTTGCCGACCTTCACGTG
GAGCGCCTGCACAAGATCGTCCAAATCGCGCGGGAGGAACGCGTGCCGCA
CTTTGTGCACGTCTCCACTGCCCCGCCGCAGCAGCCGTGCCACAGCGAGT
GGCTGTCCACCAAGAAGCAAGGCGAAGCGTTGGTACGCGACGCGTATCCG
TCCGCCACCATCGTGCGTCCGGCCGACATGTTCGGCGCGGAGGACCGCTT
GCTCACGCGCATGGCCTCCAACCTGGTTAGGATGCCGCTCATCTCGCTGG
CGGAGCACGGCGACAGTCGCGTGCAGCCCGTGTGGGTCAACGTCGCTAGG
AGAGCGGATGTTGTGTGGGATGAATCAGAGGAGACGCCGATCTCGCAAGT
CACGTCGCGTATTTCAACGTAA
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