Ggra5048.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5048.t1
Unique NameGgra5048.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length774
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:333191..335512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5048Ggra5048Gracilaria gracilis GNS1m malegenetig00000069_pilon 333191..335512 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5048.t1.stop1Ggra5048.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 333191..333193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5048.t1.CDS1Ggra5048.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 333191..335512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5048.t1.exon1Ggra5048.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 333191..335512 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5048.t1.start1Ggra5048.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 335510..335512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5048.t1Ggra5048.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 333191..335512 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5048.t1 ID=Ggra5048.t1|Name=Ggra5048.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp
MSSISSSSPSYQHEPPPTATPSDFLDEPLSFTAAIPKHLPNEVATTRYVQ
STIAAPRVSLTNSAARSAFLTAVLGETSLADDAASDAALMRQLQTRAAII
VRQIAAPIVNTDDFDTDALVALLALMATKWPLLLDVMEAESVTLVVIDVI
KRWNHRISIVSRCLTALRSFTVTDSMRRRVMFDGAVPLTLQLMQTHAHSR
RVQDRALALIANISFGCAHRKRVITRQGAIHAIITAMTTFANDQNIQLRS
ALAIRNLTHQTQVNQYLAGNEGAVEAIASAMLRFRGSNVNPELRFQCIMA
LESLCHEHERNRQRLTDVDATPLSFPTTLCSSTSAELLKPSGVDDDDEVV
NEHGDVVVEEEQVLGSDVTPHFRHGAALCPGKLVSNLVASPSVSSSGYSD
RAPTSPLSNRDHSSPQKEKEATEQEEKHSIKKPSIIRAIIHAMRRDPDDA
LLLETSLSVLTLIALHNVQVQHKIGLFGGIQVAVATIKRHPKHAAVATKS
CALIRCLCLQEANRRLITSGLPVLISALKEHRNVPDVVREVAAALSNAVF
ENEKNRAWVVNKGGIQAIIQAMNECGVKDVMVLDAGICAMRNFVDSSYSG
ALSAVNDGAVQAAVSALDRTKDACTKGECIVQEQAVLFLVDVASLAPQSK
KHMRDADAADWIENALAKLSAERHAELHSAADSLISELAEQGGNMYGKSR
TASAAGQRGSGKPSGRPPRGLFGGFLLPRRAATTTDTRKRFGGRSMPIGS
GRTEIPRKGKRLSTRLRFGAALS*
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spliced messenger RNA

>Ggra5048.t1 ID=Ggra5048.t1|Name=Ggra5048.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2322bp|location=Sequence derived from alignment at tig00000069_pilon:333191..335512- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTATATCTTCATCAAGTCCGTCCTATCAACATGAGCCGCCACC
AACCGCCACGCCGTCCGACTTTCTCGACGAGCCGCTTTCCTTCACGGCCG
CCATTCCGAAGCATCTCCCCAACGAAGTGGCCACCACGCGCTACGTGCAG
AGTACCATTGCGGCGCCGCGCGTGTCGCTCACCAATTCCGCCGCCAGAAG
CGCCTTTCTCACCGCCGTGTTAGGCGAAACTTCGCTTGCGGATGACGCCG
CCAGTGACGCCGCCTTGATGCGACAGCTCCAGACGCGTGCGGCTATCATT
GTCAGGCAAATTGCCGCCCCGATAGTCAACACGGATGACTTTGATACCGA
TGCGCTCGTCGCGTTGCTGGCGCTCATGGCCACCAAATGGCCGCTTCTGC
TCGATGTCATGGAGGCAGAATCCGTGACCCTTGTCGTCATCGATGTTATC
AAGCGCTGGAACCATCGAATATCTATTGTTTCGCGCTGTCTCACCGCACT
TCGTTCTTTCACCGTTACGGATTCCATGAGGAGGCGCGTCATGTTTGACG
GCGCCGTGCCGCTTACGTTACAGCTTATGCAAACCCATGCGCACAGTCGT
CGTGTGCAGGATCGCGCTCTTGCGCTGATTGCCAACATTTCGTTTGGATG
TGCGCATCGAAAGCGCGTCATAACTAGGCAGGGTGCTATTCATGCTATTA
TAACGGCCATGACAACCTTTGCCAATGATCAGAATATCCAGCTACGATCC
GCGTTGGCCATTCGTAACCTCACACATCAGACGCAGGTCAATCAGTATCT
CGCTGGAAATGAGGGTGCTGTGGAGGCTATTGCCTCGGCAATGCTCCGTT
TTCGTGGAAGTAATGTGAATCCTGAATTGAGGTTTCAGTGTATAATGGCT
TTGGAAAGTCTTTGTCATGAGCATGAACGAAATCGACAACGATTGACAGA
TGTTGATGCGACCCCGTTGTCGTTTCCTACCACGCTTTGTAGCAGTACTA
GTGCCGAACTTTTGAAGCCTTCTGGTGTCGATGATGATGATGAAGTTGTC
AATGAACATGGGGATGTCGTGGTTGAAGAGGAGCAGGTTTTAGGGTCTGA
CGTCACTCCTCATTTTAGACACGGCGCGGCTTTATGTCCTGGAAAGCTTG
TGTCCAACCTCGTAGCATCACCTTCAGTTTCAAGCAGTGGCTATTCTGAC
CGTGCGCCCACTTCTCCTTTATCCAATCGAGATCATTCGTCCCCTCAAAA
GGAGAAAGAAGCCACCGAACAAGAAGAAAAACATTCCATAAAGAAGCCTT
CAATCATTCGAGCTATCATCCATGCTATGAGGAGAGATCCTGATGACGCC
CTGCTTCTGGAAACTTCTTTGTCGGTACTCACATTGATTGCGTTGCACAA
CGTACAGGTGCAGCACAAAATCGGCCTTTTCGGCGGTATCCAAGTTGCTG
TAGCTACCATCAAAAGACATCCCAAGCATGCGGCTGTAGCTACAAAGTCG
TGCGCGCTTATCCGGTGCTTGTGTCTTCAGGAAGCGAATCGAAGACTGAT
TACGTCAGGATTGCCTGTACTCATATCTGCATTGAAAGAACATCGAAACG
TTCCAGACGTGGTACGTGAAGTGGCTGCTGCGCTTAGCAATGCAGTTTTT
GAAAATGAGAAGAACAGGGCTTGGGTGGTCAATAAGGGTGGAATTCAGGC
CATCATCCAGGCCATGAACGAATGTGGTGTGAAGGACGTCATGGTATTGG
ACGCTGGCATCTGCGCCATGCGCAATTTTGTCGATTCTAGCTACAGCGGA
GCGTTGTCTGCCGTGAATGACGGCGCTGTACAAGCCGCTGTCAGTGCATT
AGATCGCACCAAAGACGCATGTACAAAAGGTGAATGCATCGTTCAAGAGC
AAGCAGTTTTGTTTTTGGTTGATGTTGCATCATTGGCGCCACAATCAAAA
AAGCACATGCGCGATGCAGATGCTGCTGATTGGATTGAGAACGCTCTGGC
AAAACTTTCAGCTGAAAGACATGCAGAGCTGCATTCCGCAGCTGACTCAC
TGATATCAGAACTTGCCGAACAGGGTGGTAATATGTACGGAAAATCGAGA
ACTGCAAGCGCTGCGGGTCAAAGAGGGAGTGGAAAACCTTCTGGGAGACC
GCCACGAGGTTTGTTTGGAGGCTTTCTTCTACCGAGACGCGCGGCTACAA
CGACGGATACGCGAAAAAGGTTTGGTGGACGAAGCATGCCGATCGGAAGT
GGCAGAACTGAAATTCCACGAAAGGGCAAGCGGCTCTCTACAAGACTTCG
CTTTGGAGCCGCCTTGTCATAA
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protein sequence of Ggra5048.t1

>Ggra5048.t1 ID=Ggra5048.t1|Name=Ggra5048.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=774bp
MSSISSSSPSYQHEPPPTATPSDFLDEPLSFTAAIPKHLPNEVATTRYVQ
STIAAPRVSLTNSAARSAFLTAVLGETSLADDAASDAALMRQLQTRAAII
VRQIAAPIVNTDDFDTDALVALLALMATKWPLLLDVMEAESVTLVVIDVI
KRWNHRISIVSRCLTALRSFTVTDSMRRRVMFDGAVPLTLQLMQTHAHSR
RVQDRALALIANISFGCAHRKRVITRQGAIHAIITAMTTFANDQNIQLRS
ALAIRNLTHQTQVNQYLAGNEGAVEAIASAMLRFRGSNVNPELRFQCIMA
LESLCHEHERNRQRLTDVDATPLSFPTTLCSSTSAELLKPSGVDDDDEVV
NEHGDVVVEEEQVLGSDVTPHFRHGAALCPGKLVSNLVASPSVSSSGYSD
RAPTSPLSNRDHSSPQKEKEATEQEEKHSIKKPSIIRAIIHAMRRDPDDA
LLLETSLSVLTLIALHNVQVQHKIGLFGGIQVAVATIKRHPKHAAVATKS
CALIRCLCLQEANRRLITSGLPVLISALKEHRNVPDVVREVAAALSNAVF
ENEKNRAWVVNKGGIQAIIQAMNECGVKDVMVLDAGICAMRNFVDSSYSG
ALSAVNDGAVQAAVSALDRTKDACTKGECIVQEQAVLFLVDVASLAPQSK
KHMRDADAADWIENALAKLSAERHAELHSAADSLISELAEQGGNMYGKSR
TASAAGQRGSGKPSGRPPRGLFGGFLLPRRAATTTDTRKRFGGRSMPIGS
GRTEIPRKGKRLSTRLRFGAALS*
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mRNA from alignment at tig00000069_pilon:333191..335512-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5048.t1 ID=Ggra5048.t1|Name=Ggra5048.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2322bp|location=Sequence derived from alignment at tig00000069_pilon:333191..335512- (Gracilaria gracilis GNS1m male)
ATGTCGTCTATATCTTCATCAAGTCCGTCCTATCAACATGAGCCGCCACC
AACCGCCACGCCGTCCGACTTTCTCGACGAGCCGCTTTCCTTCACGGCCG
CCATTCCGAAGCATCTCCCCAACGAAGTGGCCACCACGCGCTACGTGCAG
AGTACCATTGCGGCGCCGCGCGTGTCGCTCACCAATTCCGCCGCCAGAAG
CGCCTTTCTCACCGCCGTGTTAGGCGAAACTTCGCTTGCGGATGACGCCG
CCAGTGACGCCGCCTTGATGCGACAGCTCCAGACGCGTGCGGCTATCATT
GTCAGGCAAATTGCCGCCCCGATAGTCAACACGGATGACTTTGATACCGA
TGCGCTCGTCGCGTTGCTGGCGCTCATGGCCACCAAATGGCCGCTTCTGC
TCGATGTCATGGAGGCAGAATCCGTGACCCTTGTCGTCATCGATGTTATC
AAGCGCTGGAACCATCGAATATCTATTGTTTCGCGCTGTCTCACCGCACT
TCGTTCTTTCACCGTTACGGATTCCATGAGGAGGCGCGTCATGTTTGACG
GCGCCGTGCCGCTTACGTTACAGCTTATGCAAACCCATGCGCACAGTCGT
CGTGTGCAGGATCGCGCTCTTGCGCTGATTGCCAACATTTCGTTTGGATG
TGCGCATCGAAAGCGCGTCATAACTAGGCAGGGTGCTATTCATGCTATTA
TAACGGCCATGACAACCTTTGCCAATGATCAGAATATCCAGCTACGATCC
GCGTTGGCCATTCGTAACCTCACACATCAGACGCAGGTCAATCAGTATCT
CGCTGGAAATGAGGGTGCTGTGGAGGCTATTGCCTCGGCAATGCTCCGTT
TTCGTGGAAGTAATGTGAATCCTGAATTGAGGTTTCAGTGTATAATGGCT
TTGGAAAGTCTTTGTCATGAGCATGAACGAAATCGACAACGATTGACAGA
TGTTGATGCGACCCCGTTGTCGTTTCCTACCACGCTTTGTAGCAGTACTA
GTGCCGAACTTTTGAAGCCTTCTGGTGTCGATGATGATGATGAAGTTGTC
AATGAACATGGGGATGTCGTGGTTGAAGAGGAGCAGGTTTTAGGGTCTGA
CGTCACTCCTCATTTTAGACACGGCGCGGCTTTATGTCCTGGAAAGCTTG
TGTCCAACCTCGTAGCATCACCTTCAGTTTCAAGCAGTGGCTATTCTGAC
CGTGCGCCCACTTCTCCTTTATCCAATCGAGATCATTCGTCCCCTCAAAA
GGAGAAAGAAGCCACCGAACAAGAAGAAAAACATTCCATAAAGAAGCCTT
CAATCATTCGAGCTATCATCCATGCTATGAGGAGAGATCCTGATGACGCC
CTGCTTCTGGAAACTTCTTTGTCGGTACTCACATTGATTGCGTTGCACAA
CGTACAGGTGCAGCACAAAATCGGCCTTTTCGGCGGTATCCAAGTTGCTG
TAGCTACCATCAAAAGACATCCCAAGCATGCGGCTGTAGCTACAAAGTCG
TGCGCGCTTATCCGGTGCTTGTGTCTTCAGGAAGCGAATCGAAGACTGAT
TACGTCAGGATTGCCTGTACTCATATCTGCATTGAAAGAACATCGAAACG
TTCCAGACGTGGTACGTGAAGTGGCTGCTGCGCTTAGCAATGCAGTTTTT
GAAAATGAGAAGAACAGGGCTTGGGTGGTCAATAAGGGTGGAATTCAGGC
CATCATCCAGGCCATGAACGAATGTGGTGTGAAGGACGTCATGGTATTGG
ACGCTGGCATCTGCGCCATGCGCAATTTTGTCGATTCTAGCTACAGCGGA
GCGTTGTCTGCCGTGAATGACGGCGCTGTACAAGCCGCTGTCAGTGCATT
AGATCGCACCAAAGACGCATGTACAAAAGGTGAATGCATCGTTCAAGAGC
AAGCAGTTTTGTTTTTGGTTGATGTTGCATCATTGGCGCCACAATCAAAA
AAGCACATGCGCGATGCAGATGCTGCTGATTGGATTGAGAACGCTCTGGC
AAAACTTTCAGCTGAAAGACATGCAGAGCTGCATTCCGCAGCTGACTCAC
TGATATCAGAACTTGCCGAACAGGGTGGTAATATGTACGGAAAATCGAGA
ACTGCAAGCGCTGCGGGTCAAAGAGGGAGTGGAAAACCTTCTGGGAGACC
GCCACGAGGTTTGTTTGGAGGCTTTCTTCTACCGAGACGCGCGGCTACAA
CGACGGATACGCGAAAAAGGTTTGGTGGACGAAGCATGCCGATCGGAAGT
GGCAGAACTGAAATTCCACGAAAGGGCAAGCGGCTCTCTACAAGACTTCG
CTTTGGAGCCGCCTTGTCATAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:333191..335512-

>Ggra5048.t1 ID=Ggra5048.t1|Name=Ggra5048.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2322bp|location=Sequence derived from alignment at tig00000069_pilon:333191..335512- (Gracilaria gracilis GNS1m male)
ATGTCGTCTATATCTTCATCAAGTCCGTCCTATCAACATGAGCCGCCACC
AACCGCCACGCCGTCCGACTTTCTCGACGAGCCGCTTTCCTTCACGGCCG
CCATTCCGAAGCATCTCCCCAACGAAGTGGCCACCACGCGCTACGTGCAG
AGTACCATTGCGGCGCCGCGCGTGTCGCTCACCAATTCCGCCGCCAGAAG
CGCCTTTCTCACCGCCGTGTTAGGCGAAACTTCGCTTGCGGATGACGCCG
CCAGTGACGCCGCCTTGATGCGACAGCTCCAGACGCGTGCGGCTATCATT
GTCAGGCAAATTGCCGCCCCGATAGTCAACACGGATGACTTTGATACCGA
TGCGCTCGTCGCGTTGCTGGCGCTCATGGCCACCAAATGGCCGCTTCTGC
TCGATGTCATGGAGGCAGAATCCGTGACCCTTGTCGTCATCGATGTTATC
AAGCGCTGGAACCATCGAATATCTATTGTTTCGCGCTGTCTCACCGCACT
TCGTTCTTTCACCGTTACGGATTCCATGAGGAGGCGCGTCATGTTTGACG
GCGCCGTGCCGCTTACGTTACAGCTTATGCAAACCCATGCGCACAGTCGT
CGTGTGCAGGATCGCGCTCTTGCGCTGATTGCCAACATTTCGTTTGGATG
TGCGCATCGAAAGCGCGTCATAACTAGGCAGGGTGCTATTCATGCTATTA
TAACGGCCATGACAACCTTTGCCAATGATCAGAATATCCAGCTACGATCC
GCGTTGGCCATTCGTAACCTCACACATCAGACGCAGGTCAATCAGTATCT
CGCTGGAAATGAGGGTGCTGTGGAGGCTATTGCCTCGGCAATGCTCCGTT
TTCGTGGAAGTAATGTGAATCCTGAATTGAGGTTTCAGTGTATAATGGCT
TTGGAAAGTCTTTGTCATGAGCATGAACGAAATCGACAACGATTGACAGA
TGTTGATGCGACCCCGTTGTCGTTTCCTACCACGCTTTGTAGCAGTACTA
GTGCCGAACTTTTGAAGCCTTCTGGTGTCGATGATGATGATGAAGTTGTC
AATGAACATGGGGATGTCGTGGTTGAAGAGGAGCAGGTTTTAGGGTCTGA
CGTCACTCCTCATTTTAGACACGGCGCGGCTTTATGTCCTGGAAAGCTTG
TGTCCAACCTCGTAGCATCACCTTCAGTTTCAAGCAGTGGCTATTCTGAC
CGTGCGCCCACTTCTCCTTTATCCAATCGAGATCATTCGTCCCCTCAAAA
GGAGAAAGAAGCCACCGAACAAGAAGAAAAACATTCCATAAAGAAGCCTT
CAATCATTCGAGCTATCATCCATGCTATGAGGAGAGATCCTGATGACGCC
CTGCTTCTGGAAACTTCTTTGTCGGTACTCACATTGATTGCGTTGCACAA
CGTACAGGTGCAGCACAAAATCGGCCTTTTCGGCGGTATCCAAGTTGCTG
TAGCTACCATCAAAAGACATCCCAAGCATGCGGCTGTAGCTACAAAGTCG
TGCGCGCTTATCCGGTGCTTGTGTCTTCAGGAAGCGAATCGAAGACTGAT
TACGTCAGGATTGCCTGTACTCATATCTGCATTGAAAGAACATCGAAACG
TTCCAGACGTGGTACGTGAAGTGGCTGCTGCGCTTAGCAATGCAGTTTTT
GAAAATGAGAAGAACAGGGCTTGGGTGGTCAATAAGGGTGGAATTCAGGC
CATCATCCAGGCCATGAACGAATGTGGTGTGAAGGACGTCATGGTATTGG
ACGCTGGCATCTGCGCCATGCGCAATTTTGTCGATTCTAGCTACAGCGGA
GCGTTGTCTGCCGTGAATGACGGCGCTGTACAAGCCGCTGTCAGTGCATT
AGATCGCACCAAAGACGCATGTACAAAAGGTGAATGCATCGTTCAAGAGC
AAGCAGTTTTGTTTTTGGTTGATGTTGCATCATTGGCGCCACAATCAAAA
AAGCACATGCGCGATGCAGATGCTGCTGATTGGATTGAGAACGCTCTGGC
AAAACTTTCAGCTGAAAGACATGCAGAGCTGCATTCCGCAGCTGACTCAC
TGATATCAGAACTTGCCGAACAGGGTGGTAATATGTACGGAAAATCGAGA
ACTGCAAGCGCTGCGGGTCAAAGAGGGAGTGGAAAACCTTCTGGGAGACC
GCCACGAGGTTTGTTTGGAGGCTTTCTTCTACCGAGACGCGCGGCTACAA
CGACGGATACGCGAAAAAGGTTTGGTGGACGAAGCATGCCGATCGGAAGT
GGCAGAACTGAAATTCCACGAAAGGGCAAGCGGCTCTCTACAAGACTTCG
CTTTGGAGCCGCCTTGTCATAA
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