Ggra5041.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5041.t1
Unique NameGgra5041.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:323734..324465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708930.1
PFAMsFA_hydroxylase
Max annot lvl2759|Eukaryota
KEGG rclassRC01867
KEGG koko:K14424
KEGG ReactionR07485,R07490
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
Evalue1.4e-90
EggNOG OGsCOG3000@1|root,KOG0873@2759|Eukaryota
DescriptionC-4 methylsterol oxidase activity
COG categoryI
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5041Ggra5041Gracilaria gracilis GNS1m malegenetig00000069_pilon 323734..324465 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5041.t1.start1Ggra5041.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 323734..323736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5041.t1.CDS1Ggra5041.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 323734..324465 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5041.t1.exon1Ggra5041.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 323734..324465 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5041.t1.stop1Ggra5041.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 324463..324465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5041.t1Ggra5041.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 323734..324465 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5041.t1 ID=Ggra5041.t1|Name=Ggra5041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=244bp
MFVGGCFASQVLGYFIACVPYLLFDIFRPSMLSKYKIQNKEYPTSSQILQ
SVKDMLISFATVVLPMLIFGGFFIEQIGITRDGPLPKWHIMLIQIAFFFL
VEDFLNYWLHRWLHLPWLYRHIHSIHHKYDSPFGLVAAYAHPIEVMVLAI
PTFVGPVAIAPHLYTLMIWQAFRNFEAIDIHSGYELPYSFKSLFPAYAGA
NHHDYHHYMHSGNFASVFTWCDRLYGTDLGYRTYQQRQKERIE*
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spliced messenger RNA

>Ggra5041.t1 ID=Ggra5041.t1|Name=Ggra5041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000069_pilon:323734..324465+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTGGGCGGTTGCTTTGCTTCTCAGGTACTTGGCTATTTTATAGC
ATGCGTACCGTACTTGCTGTTCGATATCTTTCGCCCTTCAATGCTATCAA
AGTACAAGATACAAAACAAGGAGTATCCGACGTCCTCTCAAATTCTTCAA
TCCGTTAAGGATATGTTAATTTCGTTCGCGACCGTTGTGCTGCCAATGCT
AATCTTCGGCGGTTTCTTCATTGAACAAATCGGAATTACGAGAGATGGAC
CGCTACCAAAGTGGCATATCATGCTTATTCAAATCGCGTTTTTCTTTCTT
GTTGAAGATTTTCTCAACTATTGGTTGCATCGCTGGTTGCATCTTCCTTG
GTTATATCGACACATTCACAGCATTCATCACAAATACGACTCACCGTTTG
GTTTGGTCGCTGCATATGCTCATCCTATTGAAGTCATGGTGCTTGCTATT
CCCACCTTTGTCGGGCCCGTAGCAATCGCGCCGCATCTTTACACCCTCAT
GATTTGGCAAGCTTTTCGAAACTTTGAAGCCATCGATATCCATTCTGGAT
ATGAACTTCCGTACAGTTTCAAGTCTCTCTTCCCAGCATATGCTGGTGCA
AACCATCATGATTATCATCATTACATGCATTCGGGTAACTTTGCTTCGGT
CTTCACGTGGTGCGATCGCTTGTATGGCACTGACTTGGGATACCGAACAT
ATCAGCAACGACAGAAAGAGAGAATCGAGTGA
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protein sequence of Ggra5041.t1

>Ggra5041.t1 ID=Ggra5041.t1|Name=Ggra5041.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MFVGGCFASQVLGYFIACVPYLLFDIFRPSMLSKYKIQNKEYPTSSQILQ
SVKDMLISFATVVLPMLIFGGFFIEQIGITRDGPLPKWHIMLIQIAFFFL
VEDFLNYWLHRWLHLPWLYRHIHSIHHKYDSPFGLVAAYAHPIEVMVLAI
PTFVGPVAIAPHLYTLMIWQAFRNFEAIDIHSGYELPYSFKSLFPAYAGA
NHHDYHHYMHSGNFASVFTWCDRLYGTDLGYRTYQQRQKERIE*
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mRNA from alignment at tig00000069_pilon:323734..324465+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5041.t1 ID=Ggra5041.t1|Name=Ggra5041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000069_pilon:323734..324465+ (Gracilaria gracilis GNS1m male)
ATGTTTGTGGGCGGTTGCTTTGCTTCTCAGGTACTTGGCTATTTTATAGC
ATGCGTACCGTACTTGCTGTTCGATATCTTTCGCCCTTCAATGCTATCAA
AGTACAAGATACAAAACAAGGAGTATCCGACGTCCTCTCAAATTCTTCAA
TCCGTTAAGGATATGTTAATTTCGTTCGCGACCGTTGTGCTGCCAATGCT
AATCTTCGGCGGTTTCTTCATTGAACAAATCGGAATTACGAGAGATGGAC
CGCTACCAAAGTGGCATATCATGCTTATTCAAATCGCGTTTTTCTTTCTT
GTTGAAGATTTTCTCAACTATTGGTTGCATCGCTGGTTGCATCTTCCTTG
GTTATATCGACACATTCACAGCATTCATCACAAATACGACTCACCGTTTG
GTTTGGTCGCTGCATATGCTCATCCTATTGAAGTCATGGTGCTTGCTATT
CCCACCTTTGTCGGGCCCGTAGCAATCGCGCCGCATCTTTACACCCTCAT
GATTTGGCAAGCTTTTCGAAACTTTGAAGCCATCGATATCCATTCTGGAT
ATGAACTTCCGTACAGTTTCAAGTCTCTCTTCCCAGCATATGCTGGTGCA
AACCATCATGATTATCATCATTACATGCATTCGGGTAACTTTGCTTCGGT
CTTCACGTGGTGCGATCGCTTGTATGGCACTGACTTGGGATACCGAACAT
ATCAGCAACGACAGAAAGAGAGAATCGAGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:323734..324465+

>Ggra5041.t1 ID=Ggra5041.t1|Name=Ggra5041.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00000069_pilon:323734..324465+ (Gracilaria gracilis GNS1m male)
ATGTTTGTGGGCGGTTGCTTTGCTTCTCAGGTACTTGGCTATTTTATAGC
ATGCGTACCGTACTTGCTGTTCGATATCTTTCGCCCTTCAATGCTATCAA
AGTACAAGATACAAAACAAGGAGTATCCGACGTCCTCTCAAATTCTTCAA
TCCGTTAAGGATATGTTAATTTCGTTCGCGACCGTTGTGCTGCCAATGCT
AATCTTCGGCGGTTTCTTCATTGAACAAATCGGAATTACGAGAGATGGAC
CGCTACCAAAGTGGCATATCATGCTTATTCAAATCGCGTTTTTCTTTCTT
GTTGAAGATTTTCTCAACTATTGGTTGCATCGCTGGTTGCATCTTCCTTG
GTTATATCGACACATTCACAGCATTCATCACAAATACGACTCACCGTTTG
GTTTGGTCGCTGCATATGCTCATCCTATTGAAGTCATGGTGCTTGCTATT
CCCACCTTTGTCGGGCCCGTAGCAATCGCGCCGCATCTTTACACCCTCAT
GATTTGGCAAGCTTTTCGAAACTTTGAAGCCATCGATATCCATTCTGGAT
ATGAACTTCCGTACAGTTTCAAGTCTCTCTTCCCAGCATATGCTGGTGCA
AACCATCATGATTATCATCATTACATGCATTCGGGTAACTTTGCTTCGGT
CTTCACGTGGTGCGATCGCTTGTATGGCACTGACTTGGGATACCGAACAT
ATCAGCAACGACAGAAAGAGAGAATCGAGTGA
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