Ggra504.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra504.t1
Unique NameGgra504.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000238_piloncontigtig00000238_pilon:43696..44657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002508130.1
PFAMsDUF2499,DUF3593
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004103,GO:0004305,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
Evalue1.23e-17
EggNOG OGsKOG2445@1|root,KOG2445@2759|Eukaryota
Descriptionpositive regulation of TORC1 signaling
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra504Ggra504Gracilaria gracilis GNS1m malegenetig00000238_pilon 43696..44657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra504.t1Ggra504.t1Gracilaria gracilis GNS1m malepolypeptidetig00000238_pilon 43696..44657 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra504.t1.start1Ggra504.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000238_pilon 43696..43698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra504.t1.CDS1Ggra504.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000238_pilon 43696..44220 +
Ggra504.t1.CDS2Ggra504.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000238_pilon 44274..44657 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra504.t1.exon1Ggra504.t1.exon1Gracilaria gracilis GNS1m maleexontig00000238_pilon 43696..44220 +
Ggra504.t1.exon2Ggra504.t1.exon2Gracilaria gracilis GNS1m maleexontig00000238_pilon 44274..44657 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra504.t1.intron1Ggra504.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000238_pilon 44221..44273 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra504.t1.stop1Ggra504.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000238_pilon 44655..44657 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra504.t1 ID=Ggra504.t1|Name=Ggra504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MLVAQTADADGASGDVDALVSELAIMQRVELRLELPDCSVRSLTLALYGE
LTPSTTANFAALVAARAYDNKGVYRVLPQLNVQLGDTLRNGGVSGAAAPS
DGRLRAKNWRLSHSAPGVLSMVVAHGYVDSRFFFTTRRGDSRYLDGRYVG
FGRVQRKLDGLFEQERAVSGEQCSLRIASVSGSRFSPGSFIHRGTVYTRS
SLWGTSLGVVPAVPRSTPENVTKMLVDSWSVSPAAIDGPAGQSFAVSLIP
YLAFLYVLNRSEAKCPPLLNFGFRFLLVFVFATIPAGICAKAHYHDILAN
ID*
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spliced messenger RNA

>Ggra504.t1 ID=Ggra504.t1|Name=Ggra504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000238_pilon:43696..44657+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGTGGCGCAGACGGCGGACGCAGACGGCGCATCGGGCGACGTGGA
CGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGCGTGGAGCTCCGGCTCG
AGCTGCCGGACTGCAGCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAA
CTAACGCCGTCCACGACGGCCAATTTCGCCGCACTAGTAGCGGCGCGCGC
GTACGACAACAAGGGCGTGTACCGCGTGCTGCCGCAGCTCAACGTGCAGC
TGGGCGACACGCTGCGCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCG
GACGGCCGTCTGCGCGCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGG
CGTGCTGTCCATGGTGGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTT
TTACTACGCGACGCGGCGATAGCCGTTACTTGGATGGCCGATACGTCGGC
TTTGGGCGCGTACAACGAAAGCTCGACGGGCTGTTCGAGCAGGAACGCGC
CGTGTCTGGCGAGCAGTGCTCGCTGCGAATAGCATCTGTTTCTGGTTCAC
GGTTCAGTCCTGGTTCATTCATACATAGAGGGACCGTATACACTCGTTCA
TCGCTATGGGGCACATCGCTAGGAGTTGTGCCGGCTGTGCCACGTTCTAC
ACCAGAGAATGTGACGAAAATGTTGGTTGATTCGTGGTCGGTGTCTCCAG
CCGCGATAGACGGACCGGCCGGACAGAGCTTTGCTGTTTCTTTGATTCCT
TACCTTGCCTTCCTCTACGTTTTGAACCGTTCTGAAGCGAAATGTCCACC
TCTTTTGAACTTCGGCTTCCGCTTTCTCTTGGTTTTTGTATTTGCAACTA
TTCCAGCCGGAATATGCGCTAAGGCCCATTACCATGATATTCTGGCAAAC
ATAGACTGA
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protein sequence of Ggra504.t1

>Ggra504.t1 ID=Ggra504.t1|Name=Ggra504.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MLVAQTADADGASGDVDALVSELAIMQRVELRLELPDCSVRSLTLALYGE
LTPSTTANFAALVAARAYDNKGVYRVLPQLNVQLGDTLRNGGVSGAAAPS
DGRLRAKNWRLSHSAPGVLSMVVAHGYVDSRFFFTTRRGDSRYLDGRYVG
FGRVQRKLDGLFEQERAVSGEQCSLRIASVSGSRFSPGSFIHRGTVYTRS
SLWGTSLGVVPAVPRSTPENVTKMLVDSWSVSPAAIDGPAGQSFAVSLIP
YLAFLYVLNRSEAKCPPLLNFGFRFLLVFVFATIPAGICAKAHYHDILAN
ID*
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mRNA from alignment at tig00000238_pilon:43696..44657+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra504.t1 ID=Ggra504.t1|Name=Ggra504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=962bp|location=Sequence derived from alignment at tig00000238_pilon:43696..44657+ (Gracilaria gracilis GNS1m male)
ATGCTAGTGGCGCAGACGGCGGACGCAGACGGCGCATCGGGCGACGTGGA
CGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGCGTGGAGCTCCGGCTCG
AGCTGCCGGACTGCAGCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAA
CTAACGCCGTCCACGACGGCCAATTTCGCCGCACTAGTAGCGGCGCGCGC
GTACGACAACAAGGGCGTGTACCGCGTGCTGCCGCAGCTCAACGTGCAGC
TGGGCGACACGCTGCGCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCG
GACGGCCGTCTGCGCGCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGG
CGTGCTGTCCATGGTGGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTT
TTACTACGCGACGCGGCGATAGCCGTTACTTGGATGGCCGATACGTCGGC
TTTGGGCGCGTACAACGAAAGCTCGACGGGCTGTTCGAGCAGGAACGCGC
CGTGTCTGGCGAGCAGTGCTCGCTGGTGCGCCGCCCTGTGCATTTCTGAG
CAAGACGACATATCGATGCCGTCTGCAGCGAATAGCATCTGTTTCTGGTT
CACGGTTCAGTCCTGGTTCATTCATACATAGAGGGACCGTATACACTCGT
TCATCGCTATGGGGCACATCGCTAGGAGTTGTGCCGGCTGTGCCACGTTC
TACACCAGAGAATGTGACGAAAATGTTGGTTGATTCGTGGTCGGTGTCTC
CAGCCGCGATAGACGGACCGGCCGGACAGAGCTTTGCTGTTTCTTTGATT
CCTTACCTTGCCTTCCTCTACGTTTTGAACCGTTCTGAAGCGAAATGTCC
ACCTCTTTTGAACTTCGGCTTCCGCTTTCTCTTGGTTTTTGTATTTGCAA
CTATTCCAGCCGGAATATGCGCTAAGGCCCATTACCATGATATTCTGGCA
AACATAGACTGA
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Coding sequence (CDS) from alignment at tig00000238_pilon:43696..44657+

>Ggra504.t1 ID=Ggra504.t1|Name=Ggra504.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000238_pilon:43696..44657+ (Gracilaria gracilis GNS1m male)
ATGCTAGTGGCGCAGACGGCGGACGCAGACGGCGCATCGGGCGACGTGGA
CGCTTTGGTGTCCGAGCTGGCCATCATGCAGCGCGTGGAGCTCCGGCTCG
AGCTGCCGGACTGCAGCGTACGCTCGCTCACGCTCGCGCTGTACGGCGAA
CTAACGCCGTCCACGACGGCCAATTTCGCCGCACTAGTAGCGGCGCGCGC
GTACGACAACAAGGGCGTGTACCGCGTGCTGCCGCAGCTCAACGTGCAGC
TGGGCGACACGCTGCGCAACGGCGGCGTGTCCGGCGCGGCCGCCCCCTCG
GACGGCCGTCTGCGCGCGAAGAACTGGAGACTGTCGCACTCGGCGCCCGG
CGTGCTGTCCATGGTGGTTGCGCATGGCTACGTGGATAGCCGCTTCTTTT
TTACTACGCGACGCGGCGATAGCCGTTACTTGGATGGCCGATACGTCGGC
TTTGGGCGCGTACAACGAAAGCTCGACGGGCTGTTCGAGCAGGAACGCGC
CGTGTCTGGCGAGCAGTGCTCGCTGCGAATAGCATCTGTTTCTGGTTCAC
GGTTCAGTCCTGGTTCATTCATACATAGAGGGACCGTATACACTCGTTCA
TCGCTATGGGGCACATCGCTAGGAGTTGTGCCGGCTGTGCCACGTTCTAC
ACCAGAGAATGTGACGAAAATGTTGGTTGATTCGTGGTCGGTGTCTCCAG
CCGCGATAGACGGACCGGCCGGACAGAGCTTTGCTGTTTCTTTGATTCCT
TACCTTGCCTTCCTCTACGTTTTGAACCGTTCTGAAGCGAAATGTCCACC
TCTTTTGAACTTCGGCTTCCGCTTTCTCTTGGTTTTTGTATTTGCAACTA
TTCCAGCCGGAATATGCGCTAAGGCCCATTACCATGATATTCTGGCAAAC
ATAGACTGA
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