Ggra5038.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5038.t1
Unique Name	Ggra5038.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:259077..259853 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709165.1
PFAMs	DEK_C,SWIB
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15223,ko:K22381
GOs	GO:0000120,GO:0000226,GO:0000278,GO:0000280,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051225,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902680,GO:1902850,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	1.48e-24
EggNOG OGs	COG5531@1\|root,KOG1946@2759\|Eukaryota
EC	2.3.2.27
Description	regulation of transcription by RNA polymerase I
COG category	B
BRITE	ko00000,ko01000,ko03021,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5038	Ggra5038	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 259077..259853 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5038.t1.start1	Ggra5038.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 259077..259079 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5038.t1.CDS1	Ggra5038.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 259077..259853 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5038.t1.exon1	Ggra5038.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 259077..259853 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5038.t1.stop1	Ggra5038.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 259851..259853 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5038.t1	Ggra5038.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 259077..259853 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:259077..259853+
coding sequence from alignment at tig00000069_pilon:259077..259853+

mRNA sequence

>Ggra5038.t1 ID=Ggra5038.t1|Name=Ggra5038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MRLVSKAPRLLPAFASSFLPAHTVPFISQPPRFLCATTQAAVVAKAKIPS
YVRPVVPGKPLHRFVDDKAQSRSDIIRAITAYVKEHNLQDDDDRRIFHCD
AQLKSVLGVESCTFLQVLKFITPLLKKPEEVGGRYLKEAAAVEEAYIEAQ
RSQTKKKVRTKSQARKQGAIADKKAGRHLFRPMVLSDELAAVCRSSEMQR
HEVIKAVWNYIRMNNLQGQGPPENPIKCDFLLRKVYKADYINVRTVMSGI
SPHVKKKE*

spliced messenger RNA

>Ggra5038.t1 ID=Ggra5038.t1|Name=Ggra5038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000069_pilon:259077..259853+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCGTGAGCAAAGCGCCTCGGCTGCTGCCGGCTTTCGCTTCCTC
CTTCCTTCCGGCACACACGGTTCCGTTTATCTCGCAGCCACCGCGCTTCC
TTTGTGCCACCACCCAAGCCGCCGTCGTTGCAAAAGCAAAGATCCCTTCC
TACGTTCGTCCCGTCGTGCCGGGCAAACCACTACATCGCTTTGTCGATGA
CAAGGCCCAGTCCCGCAGTGATATCATCCGTGCCATTACGGCCTATGTCA
AGGAGCACAACTTGCAGGATGACGACGATCGCCGCATCTTCCATTGCGAC
GCACAGCTCAAGTCCGTCCTGGGCGTCGAATCATGCACCTTCCTCCAAGT
TTTGAAGTTTATCACCCCACTTTTGAAGAAGCCCGAGGAAGTAGGAGGTC
GCTATTTAAAGGAGGCTGCTGCAGTGGAGGAGGCCTATATAGAAGCCCAG
CGCTCACAAACGAAGAAGAAGGTCCGCACCAAGTCCCAGGCTCGCAAGCA
GGGTGCCATTGCTGATAAGAAAGCTGGCAGGCATCTCTTCCGCCCCATGG
TTTTAAGTGACGAGCTTGCCGCTGTTTGTCGCTCGTCAGAGATGCAGAGA
CACGAGGTCATCAAAGCCGTGTGGAACTACATTCGCATGAATAACTTGCA
GGGGCAGGGCCCTCCGGAGAATCCTATCAAGTGCGATTTCCTTTTGCGCA
AAGTGTACAAAGCTGACTACATTAACGTCAGAACAGTCATGAGTGGAATC
TCTCCGCACGTCAAGAAAAAGGAGTAA

protein sequence of Ggra5038.t1

>Ggra5038.t1 ID=Ggra5038.t1|Name=Ggra5038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MRLVSKAPRLLPAFASSFLPAHTVPFISQPPRFLCATTQAAVVAKAKIPS
YVRPVVPGKPLHRFVDDKAQSRSDIIRAITAYVKEHNLQDDDDRRIFHCD
AQLKSVLGVESCTFLQVLKFITPLLKKPEEVGGRYLKEAAAVEEAYIEAQ
RSQTKKKVRTKSQARKQGAIADKKAGRHLFRPMVLSDELAAVCRSSEMQR
HEVIKAVWNYIRMNNLQGQGPPENPIKCDFLLRKVYKADYINVRTVMSGI
SPHVKKKE*

mRNA from alignment at tig00000069_pilon:259077..259853+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5038.t1 ID=Ggra5038.t1|Name=Ggra5038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000069_pilon:259077..259853+ (Gracilaria gracilis GNS1m male)
ATGCGTCTCGTGAGCAAAGCGCCTCGGCTGCTGCCGGCTTTCGCTTCCTC
CTTCCTTCCGGCACACACGGTTCCGTTTATCTCGCAGCCACCGCGCTTCC
TTTGTGCCACCACCCAAGCCGCCGTCGTTGCAAAAGCAAAGATCCCTTCC
TACGTTCGTCCCGTCGTGCCGGGCAAACCACTACATCGCTTTGTCGATGA
CAAGGCCCAGTCCCGCAGTGATATCATCCGTGCCATTACGGCCTATGTCA
AGGAGCACAACTTGCAGGATGACGACGATCGCCGCATCTTCCATTGCGAC
GCACAGCTCAAGTCCGTCCTGGGCGTCGAATCATGCACCTTCCTCCAAGT
TTTGAAGTTTATCACCCCACTTTTGAAGAAGCCCGAGGAAGTAGGAGGTC
GCTATTTAAAGGAGGCTGCTGCAGTGGAGGAGGCCTATATAGAAGCCCAG
CGCTCACAAACGAAGAAGAAGGTCCGCACCAAGTCCCAGGCTCGCAAGCA
GGGTGCCATTGCTGATAAGAAAGCTGGCAGGCATCTCTTCCGCCCCATGG
TTTTAAGTGACGAGCTTGCCGCTGTTTGTCGCTCGTCAGAGATGCAGAGA
CACGAGGTCATCAAAGCCGTGTGGAACTACATTCGCATGAATAACTTGCA
GGGGCAGGGCCCTCCGGAGAATCCTATCAAGTGCGATTTCCTTTTGCGCA
AAGTGTACAAAGCTGACTACATTAACGTCAGAACAGTCATGAGTGGAATC
TCTCCGCACGTCAAGAAAAAGGAGTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:259077..259853+

>Ggra5038.t1 ID=Ggra5038.t1|Name=Ggra5038.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000069_pilon:259077..259853+ (Gracilaria gracilis GNS1m male)
ATGCGTCTCGTGAGCAAAGCGCCTCGGCTGCTGCCGGCTTTCGCTTCCTC
CTTCCTTCCGGCACACACGGTTCCGTTTATCTCGCAGCCACCGCGCTTCC
TTTGTGCCACCACCCAAGCCGCCGTCGTTGCAAAAGCAAAGATCCCTTCC
TACGTTCGTCCCGTCGTGCCGGGCAAACCACTACATCGCTTTGTCGATGA
CAAGGCCCAGTCCCGCAGTGATATCATCCGTGCCATTACGGCCTATGTCA
AGGAGCACAACTTGCAGGATGACGACGATCGCCGCATCTTCCATTGCGAC
GCACAGCTCAAGTCCGTCCTGGGCGTCGAATCATGCACCTTCCTCCAAGT
TTTGAAGTTTATCACCCCACTTTTGAAGAAGCCCGAGGAAGTAGGAGGTC
GCTATTTAAAGGAGGCTGCTGCAGTGGAGGAGGCCTATATAGAAGCCCAG
CGCTCACAAACGAAGAAGAAGGTCCGCACCAAGTCCCAGGCTCGCAAGCA
GGGTGCCATTGCTGATAAGAAAGCTGGCAGGCATCTCTTCCGCCCCATGG
TTTTAAGTGACGAGCTTGCCGCTGTTTGTCGCTCGTCAGAGATGCAGAGA
CACGAGGTCATCAAAGCCGTGTGGAACTACATTCGCATGAATAACTTGCA
GGGGCAGGGCCCTCCGGAGAATCCTATCAAGTGCGATTTCCTTTTGCGCA
AAGTGTACAAAGCTGACTACATTAACGTCAGAACAGTCATGAGTGGAATC
TCTCCGCACGTCAAGAAAAAGGAGTAA