Ggra5034.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5034.t1
Unique NameGgra5034.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:188289..189358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5034Ggra5034Gracilaria gracilis GNS1m malegenetig00000069_pilon 188289..189358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5034.t1Ggra5034.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 188289..189358 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5034.t1.stop1Ggra5034.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 188289..188291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5034.t1.CDS1Ggra5034.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 188289..188311 -
Ggra5034.t1.CDS2Ggra5034.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 188440..189358 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5034.t1.exon1Ggra5034.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 188289..188311 -
Ggra5034.t1.exon2Ggra5034.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 188440..189358 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5034.t1.intron1Ggra5034.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 188312..188439 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5034.t1.start1Ggra5034.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 189356..189358 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5034.t1 ID=Ggra5034.t1|Name=Ggra5034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MPASSSSNPETKPHPIYPSWRSTEELVELLTANHHQWIQNLKDTVIEPDL
EKLLYPQFQPETNVDKKVASSFRRMTTKSITADVVNLNADPTIVTKTAGQ
IIEDVNTILATKNQTDAFSFMNEALHISRYGNIAEYIADHLSIRKKQIMA
NTPGVQSETFTLNFVLQGLASDQRFRTQVTNMLLNARPTTINECQLRLKE
YERLIQRQTETSTSFTPFRHTGSRAGDRGHGLSRGRGYGNRQPNSHVTNM
LSKISTKLEEIQSNTKAHKGRGRARANTAQCHGISEETIRALMAVADSKK
LDTEKSRHSSDQN*
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spliced messenger RNA

>Ggra5034.t1 ID=Ggra5034.t1|Name=Ggra5034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000069_pilon:188289..189358- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCATCTTCCTCATCAAATCCGGAAACCAAACCACATCCAATATA
CCCCAGCTGGCGCTCTACTGAAGAGCTTGTCGAACTTTTGACGGCAAATC
ACCATCAATGGATACAAAATCTGAAAGATACTGTCATAGAACCTGATCTT
GAGAAACTACTTTATCCCCAATTCCAACCCGAGACCAACGTAGACAAGAA
AGTTGCCTCCAGCTTTCGACGCATGACAACCAAAAGCATAACCGCAGACG
TCGTTAATCTCAACGCAGATCCCACCATAGTCACAAAAACCGCTGGCCAA
ATCATTGAGGACGTTAACACAATTTTGGCTACCAAAAACCAAACTGATGC
CTTTTCCTTCATGAACGAGGCACTTCATATCAGTCGATATGGAAATATTG
CCGAGTATATTGCTGATCATCTTTCTATTCGTAAGAAACAAATTATGGCC
AACACTCCGGGAGTTCAATCCGAAACGTTCACTTTGAACTTTGTTTTACA
AGGTTTGGCTTCAGATCAACGGTTTCGAACCCAAGTGACCAACATGCTCT
TGAATGCACGCCCAACAACCATCAACGAATGTCAGCTCCGCCTCAAAGAA
TACGAACGCCTAATTCAGCGTCAGACAGAGACTAGCACATCGTTCACTCC
ATTTCGCCACACTGGCAGCCGCGCTGGCGACAGAGGTCACGGACTCAGTC
GCGGCAGAGGCTACGGCAACAGACAGCCCAATTCACACGTAACGAATATG
CTCTCGAAGATTTCTACCAAACTGGAGGAGATTCAATCCAATACCAAAGC
TCACAAGGGTCGTGGTCGTGCCAGGGCTAATACTGCGCAATGTCACGGTA
TTTCAGAGGAAACAATCCGCGCCCTAATGGCCGTTGCAGACTCTAAAAAG
TTGGACACCGAAAAGTCACGGCATTCTTCAGATCAGAACTAA
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protein sequence of Ggra5034.t1

>Ggra5034.t1 ID=Ggra5034.t1|Name=Ggra5034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MPASSSSNPETKPHPIYPSWRSTEELVELLTANHHQWIQNLKDTVIEPDL
EKLLYPQFQPETNVDKKVASSFRRMTTKSITADVVNLNADPTIVTKTAGQ
IIEDVNTILATKNQTDAFSFMNEALHISRYGNIAEYIADHLSIRKKQIMA
NTPGVQSETFTLNFVLQGLASDQRFRTQVTNMLLNARPTTINECQLRLKE
YERLIQRQTETSTSFTPFRHTGSRAGDRGHGLSRGRGYGNRQPNSHVTNM
LSKISTKLEEIQSNTKAHKGRGRARANTAQCHGISEETIRALMAVADSKK
LDTEKSRHSSDQN*
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mRNA from alignment at tig00000069_pilon:188289..189358-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5034.t1 ID=Ggra5034.t1|Name=Ggra5034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1070bp|location=Sequence derived from alignment at tig00000069_pilon:188289..189358- (Gracilaria gracilis GNS1m male)
ATGCCGGCATCTTCCTCATCAAATCCGGAAACCAAACCACATCCAATATA
CCCCAGCTGGCGCTCTACTGAAGAGCTTGTCGAACTTTTGACGGCAAATC
ACCATCAATGGATACAAAATCTGAAAGATACTGTCATAGAACCTGATCTT
GAGAAACTACTTTATCCCCAATTCCAACCCGAGACCAACGTAGACAAGAA
AGTTGCCTCCAGCTTTCGACGCATGACAACCAAAAGCATAACCGCAGACG
TCGTTAATCTCAACGCAGATCCCACCATAGTCACAAAAACCGCTGGCCAA
ATCATTGAGGACGTTAACACAATTTTGGCTACCAAAAACCAAACTGATGC
CTTTTCCTTCATGAACGAGGCACTTCATATCAGTCGATATGGAAATATTG
CCGAGTATATTGCTGATCATCTTTCTATTCGTAAGAAACAAATTATGGCC
AACACTCCGGGAGTTCAATCCGAAACGTTCACTTTGAACTTTGTTTTACA
AGGTTTGGCTTCAGATCAACGGTTTCGAACCCAAGTGACCAACATGCTCT
TGAATGCACGCCCAACAACCATCAACGAATGTCAGCTCCGCCTCAAAGAA
TACGAACGCCTAATTCAGCGTCAGACAGAGACTAGCACATCGTTCACTCC
ATTTCGCCACACTGGCAGCCGCGCTGGCGACAGAGGTCACGGACTCAGTC
GCGGCAGAGGCTACGGCAACAGACAGCCCAATTCACACGTAACGAATATG
CTCTCGAAGATTTCTACCAAACTGGAGGAGATTCAATCCAATACCAAAGC
TCACAAGGGTCGTGGTCGTGCCAGGGCTAATACTGCGCAATGTCACGGTA
TTTCAGAGGAAACAATCCGCGCCCTAATGGCCGTTGCAGACTCTAAAAAG
TTGGACACCGAAAAGTCACGTAAGTATATGCTCAATTCTGGTGCTCATCC
CAGCATCATAAACCACAGTGTTTCACGAAAAACGGACCTTACGAAACAGA
TCATATCAATCATTGCAACGGACGCATCTCTTTACACGTCTCAGAAGGGC
ATTCTTCAGATCAGAACTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:188289..189358-

>Ggra5034.t1 ID=Ggra5034.t1|Name=Ggra5034.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000069_pilon:188289..189358- (Gracilaria gracilis GNS1m male)
ATGCCGGCATCTTCCTCATCAAATCCGGAAACCAAACCACATCCAATATA
CCCCAGCTGGCGCTCTACTGAAGAGCTTGTCGAACTTTTGACGGCAAATC
ACCATCAATGGATACAAAATCTGAAAGATACTGTCATAGAACCTGATCTT
GAGAAACTACTTTATCCCCAATTCCAACCCGAGACCAACGTAGACAAGAA
AGTTGCCTCCAGCTTTCGACGCATGACAACCAAAAGCATAACCGCAGACG
TCGTTAATCTCAACGCAGATCCCACCATAGTCACAAAAACCGCTGGCCAA
ATCATTGAGGACGTTAACACAATTTTGGCTACCAAAAACCAAACTGATGC
CTTTTCCTTCATGAACGAGGCACTTCATATCAGTCGATATGGAAATATTG
CCGAGTATATTGCTGATCATCTTTCTATTCGTAAGAAACAAATTATGGCC
AACACTCCGGGAGTTCAATCCGAAACGTTCACTTTGAACTTTGTTTTACA
AGGTTTGGCTTCAGATCAACGGTTTCGAACCCAAGTGACCAACATGCTCT
TGAATGCACGCCCAACAACCATCAACGAATGTCAGCTCCGCCTCAAAGAA
TACGAACGCCTAATTCAGCGTCAGACAGAGACTAGCACATCGTTCACTCC
ATTTCGCCACACTGGCAGCCGCGCTGGCGACAGAGGTCACGGACTCAGTC
GCGGCAGAGGCTACGGCAACAGACAGCCCAATTCACACGTAACGAATATG
CTCTCGAAGATTTCTACCAAACTGGAGGAGATTCAATCCAATACCAAAGC
TCACAAGGGTCGTGGTCGTGCCAGGGCTAATACTGCGCAATGTCACGGTA
TTTCAGAGGAAACAATCCGCGCCCTAATGGCCGTTGCAGACTCTAAAAAG
TTGGACACCGAAAAGTCACGGCATTCTTCAGATCAGAACTAA
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