Ggra5030.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5030.t1
Unique NameGgra5030.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:100757..102247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002131768.1
Preferred nameNLE1
PFAMsNLE,WD40
Max annot lvl33208|Metazoa
KEGG koko:K14855
GOsGO:0000027,GO:0001501,GO:0001655,GO:0001701,GO:0001756,GO:0001822,GO:0001824,GO:0001825,GO:0001826,GO:0003002,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005840,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007346,GO:0007389,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009892,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010951,GO:0016043,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0035282,GO:0042254,GO:0042255,GO:0042273,GO:0042592,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043281,GO:0043933,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045861,GO:0045930,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0060828,GO:0061053,GO:0061484,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0072001,GO:0080090,GO:0090263,GO:1990904,GO:2000116,GO:2000117,GO:2001233,GO:2001234,GO:2001267,GO:2001268
Evalue1.2e-87
EggNOG OGsKOG0271@1|root,KOG0271@2759|Eukaryota,38HMB@33154|Opisthokonta,3BCVF@33208|Metazoa,3CT8E@33213|Bilateria,48313@7711|Chordata
Descriptionnegative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5030Ggra5030Gracilaria gracilis GNS1m malegenetig00000069_pilon 100757..102247 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5030.t1.stop1Ggra5030.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 100757..100759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5030.t1.CDS1Ggra5030.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 100757..102247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5030.t1.exon1Ggra5030.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 100757..102247 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5030.t1.start1Ggra5030.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 102245..102247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5030.t1Ggra5030.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 100757..102247 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5030.t1 ID=Ggra5030.t1|Name=Ggra5030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=497bp
MAGSERDERDKRDDGDDERDAARSALVQLISAAGDAAGGVLDVPLSATAA
QLSELLNHVLRNEPPLPYAFLLRPSRTPVATTLAAALTAARHARETVAEL
QFVPLSLFRVRPLTRCSATLPGHREAVLVAAFSPDGRVIATGSGDTTVRL
WNAEAQLPTASLTGHRDWVLALAFSPDGSRLASASKDGRVWVWDVATAVG
SALASHRKWVTHLCWRPFHLDDRCCLLLSASKDATLNVWNVASMSSVNKL
AGHSAAVTTAVWSGQDVIYSASQDRSIKVWSAKSGLPLCSVHAHAHWVNS
LTLCSDYVLKCGAFASLDEQKGYSRTKLSQQQALLRYQKVLREGTGGKEL
MVSGSDDFTLMLWQDMWKAGARMQPVARMTGHQQLVNCVAFSPDGRYIAS
GSFDKSVRLWDGCSGKFCFTFRGHVAAVYRVVWSADGRLLMSGSKDSTCK
IWDVHNRKLKMDLPGHSDEVYTVDWSSDGSRAVSAGKDKMVKIWHH*
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spliced messenger RNA

>Ggra5030.t1 ID=Ggra5030.t1|Name=Ggra5030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000069_pilon:100757..102247- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCAGCGAGCGCGACGAGCGCGACAAGCGCGACGATGGCGACGA
CGAGCGCGACGCGGCGCGCAGTGCGCTGGTGCAGCTGATCTCCGCGGCGG
GCGACGCGGCAGGCGGCGTGCTGGACGTGCCGCTGAGCGCGACGGCGGCG
CAGCTAAGCGAGCTTCTCAACCACGTGCTGCGCAATGAGCCGCCGCTGCC
GTACGCCTTCCTGCTGCGGCCGTCGCGCACGCCGGTGGCCACCACGCTGG
CCGCCGCGCTCACGGCCGCGCGCCACGCGCGCGAGACCGTGGCCGAGCTG
CAGTTCGTGCCGCTGTCGCTGTTCCGCGTGCGCCCGCTGACGCGCTGCTC
CGCCACGCTGCCGGGCCACCGCGAGGCCGTGCTCGTGGCCGCCTTCTCGC
CGGACGGCCGCGTCATTGCCACCGGGTCGGGCGACACTACCGTGCGCCTG
TGGAACGCGGAGGCGCAGCTGCCCACCGCGTCGCTCACGGGCCATCGCGA
CTGGGTGCTCGCGCTGGCGTTTTCGCCCGACGGCAGTCGGCTGGCGTCCG
CGTCCAAGGACGGGCGCGTGTGGGTGTGGGACGTGGCCACCGCCGTCGGC
TCCGCGCTGGCGTCGCATCGAAAGTGGGTGACGCACCTGTGCTGGCGGCC
GTTTCACCTGGATGACCGCTGCTGTCTGCTGCTGTCGGCGTCCAAGGACG
CCACGCTCAACGTGTGGAACGTGGCCTCCATGAGCTCGGTGAACAAGCTG
GCGGGCCATAGCGCCGCCGTCACCACCGCCGTGTGGAGCGGGCAGGACGT
GATCTACTCGGCGTCGCAGGACCGTTCCATCAAGGTGTGGAGCGCCAAAA
GCGGCTTGCCGCTGTGCAGCGTGCACGCGCACGCGCACTGGGTCAACTCG
CTGACGCTGTGCAGCGACTACGTGCTCAAGTGCGGCGCGTTTGCGTCGCT
GGACGAGCAAAAGGGCTACTCGCGCACCAAGCTGTCGCAGCAACAGGCGC
TGCTGCGCTACCAAAAGGTGCTGCGCGAGGGCACGGGCGGCAAGGAGCTG
ATGGTGAGCGGGTCGGATGACTTCACGCTGATGCTGTGGCAGGATATGTG
GAAGGCGGGCGCGCGCATGCAGCCCGTGGCGCGCATGACGGGCCACCAGC
AGCTGGTGAACTGCGTGGCGTTCAGCCCGGATGGGCGCTACATTGCGTCG
GGGAGCTTTGATAAGAGCGTGCGGCTTTGGGACGGGTGTAGTGGCAAGTT
CTGCTTCACGTTTCGAGGCCATGTGGCGGCGGTGTATCGCGTGGTGTGGT
CAGCTGATGGGCGGCTGTTGATGAGCGGCTCCAAGGATAGTACGTGCAAG
ATTTGGGATGTGCACAACAGAAAGTTGAAGATGGACCTGCCGGGACACAG
CGATGAGGTGTACACGGTGGATTGGAGCTCGGATGGCAGCAGGGCGGTTT
CTGCTGGCAAGGACAAGATGGTGAAGATTTGGCACCACTGA
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protein sequence of Ggra5030.t1

>Ggra5030.t1 ID=Ggra5030.t1|Name=Ggra5030.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=497bp
MAGSERDERDKRDDGDDERDAARSALVQLISAAGDAAGGVLDVPLSATAA
QLSELLNHVLRNEPPLPYAFLLRPSRTPVATTLAAALTAARHARETVAEL
QFVPLSLFRVRPLTRCSATLPGHREAVLVAAFSPDGRVIATGSGDTTVRL
WNAEAQLPTASLTGHRDWVLALAFSPDGSRLASASKDGRVWVWDVATAVG
SALASHRKWVTHLCWRPFHLDDRCCLLLSASKDATLNVWNVASMSSVNKL
AGHSAAVTTAVWSGQDVIYSASQDRSIKVWSAKSGLPLCSVHAHAHWVNS
LTLCSDYVLKCGAFASLDEQKGYSRTKLSQQQALLRYQKVLREGTGGKEL
MVSGSDDFTLMLWQDMWKAGARMQPVARMTGHQQLVNCVAFSPDGRYIAS
GSFDKSVRLWDGCSGKFCFTFRGHVAAVYRVVWSADGRLLMSGSKDSTCK
IWDVHNRKLKMDLPGHSDEVYTVDWSSDGSRAVSAGKDKMVKIWHH*
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mRNA from alignment at tig00000069_pilon:100757..102247-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5030.t1 ID=Ggra5030.t1|Name=Ggra5030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000069_pilon:100757..102247- (Gracilaria gracilis GNS1m male)
ATGGCGGGCAGCGAGCGCGACGAGCGCGACAAGCGCGACGATGGCGACGA
CGAGCGCGACGCGGCGCGCAGTGCGCTGGTGCAGCTGATCTCCGCGGCGG
GCGACGCGGCAGGCGGCGTGCTGGACGTGCCGCTGAGCGCGACGGCGGCG
CAGCTAAGCGAGCTTCTCAACCACGTGCTGCGCAATGAGCCGCCGCTGCC
GTACGCCTTCCTGCTGCGGCCGTCGCGCACGCCGGTGGCCACCACGCTGG
CCGCCGCGCTCACGGCCGCGCGCCACGCGCGCGAGACCGTGGCCGAGCTG
CAGTTCGTGCCGCTGTCGCTGTTCCGCGTGCGCCCGCTGACGCGCTGCTC
CGCCACGCTGCCGGGCCACCGCGAGGCCGTGCTCGTGGCCGCCTTCTCGC
CGGACGGCCGCGTCATTGCCACCGGGTCGGGCGACACTACCGTGCGCCTG
TGGAACGCGGAGGCGCAGCTGCCCACCGCGTCGCTCACGGGCCATCGCGA
CTGGGTGCTCGCGCTGGCGTTTTCGCCCGACGGCAGTCGGCTGGCGTCCG
CGTCCAAGGACGGGCGCGTGTGGGTGTGGGACGTGGCCACCGCCGTCGGC
TCCGCGCTGGCGTCGCATCGAAAGTGGGTGACGCACCTGTGCTGGCGGCC
GTTTCACCTGGATGACCGCTGCTGTCTGCTGCTGTCGGCGTCCAAGGACG
CCACGCTCAACGTGTGGAACGTGGCCTCCATGAGCTCGGTGAACAAGCTG
GCGGGCCATAGCGCCGCCGTCACCACCGCCGTGTGGAGCGGGCAGGACGT
GATCTACTCGGCGTCGCAGGACCGTTCCATCAAGGTGTGGAGCGCCAAAA
GCGGCTTGCCGCTGTGCAGCGTGCACGCGCACGCGCACTGGGTCAACTCG
CTGACGCTGTGCAGCGACTACGTGCTCAAGTGCGGCGCGTTTGCGTCGCT
GGACGAGCAAAAGGGCTACTCGCGCACCAAGCTGTCGCAGCAACAGGCGC
TGCTGCGCTACCAAAAGGTGCTGCGCGAGGGCACGGGCGGCAAGGAGCTG
ATGGTGAGCGGGTCGGATGACTTCACGCTGATGCTGTGGCAGGATATGTG
GAAGGCGGGCGCGCGCATGCAGCCCGTGGCGCGCATGACGGGCCACCAGC
AGCTGGTGAACTGCGTGGCGTTCAGCCCGGATGGGCGCTACATTGCGTCG
GGGAGCTTTGATAAGAGCGTGCGGCTTTGGGACGGGTGTAGTGGCAAGTT
CTGCTTCACGTTTCGAGGCCATGTGGCGGCGGTGTATCGCGTGGTGTGGT
CAGCTGATGGGCGGCTGTTGATGAGCGGCTCCAAGGATAGTACGTGCAAG
ATTTGGGATGTGCACAACAGAAAGTTGAAGATGGACCTGCCGGGACACAG
CGATGAGGTGTACACGGTGGATTGGAGCTCGGATGGCAGCAGGGCGGTTT
CTGCTGGCAAGGACAAGATGGTGAAGATTTGGCACCACTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:100757..102247-

>Ggra5030.t1 ID=Ggra5030.t1|Name=Ggra5030.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00000069_pilon:100757..102247- (Gracilaria gracilis GNS1m male)
ATGGCGGGCAGCGAGCGCGACGAGCGCGACAAGCGCGACGATGGCGACGA
CGAGCGCGACGCGGCGCGCAGTGCGCTGGTGCAGCTGATCTCCGCGGCGG
GCGACGCGGCAGGCGGCGTGCTGGACGTGCCGCTGAGCGCGACGGCGGCG
CAGCTAAGCGAGCTTCTCAACCACGTGCTGCGCAATGAGCCGCCGCTGCC
GTACGCCTTCCTGCTGCGGCCGTCGCGCACGCCGGTGGCCACCACGCTGG
CCGCCGCGCTCACGGCCGCGCGCCACGCGCGCGAGACCGTGGCCGAGCTG
CAGTTCGTGCCGCTGTCGCTGTTCCGCGTGCGCCCGCTGACGCGCTGCTC
CGCCACGCTGCCGGGCCACCGCGAGGCCGTGCTCGTGGCCGCCTTCTCGC
CGGACGGCCGCGTCATTGCCACCGGGTCGGGCGACACTACCGTGCGCCTG
TGGAACGCGGAGGCGCAGCTGCCCACCGCGTCGCTCACGGGCCATCGCGA
CTGGGTGCTCGCGCTGGCGTTTTCGCCCGACGGCAGTCGGCTGGCGTCCG
CGTCCAAGGACGGGCGCGTGTGGGTGTGGGACGTGGCCACCGCCGTCGGC
TCCGCGCTGGCGTCGCATCGAAAGTGGGTGACGCACCTGTGCTGGCGGCC
GTTTCACCTGGATGACCGCTGCTGTCTGCTGCTGTCGGCGTCCAAGGACG
CCACGCTCAACGTGTGGAACGTGGCCTCCATGAGCTCGGTGAACAAGCTG
GCGGGCCATAGCGCCGCCGTCACCACCGCCGTGTGGAGCGGGCAGGACGT
GATCTACTCGGCGTCGCAGGACCGTTCCATCAAGGTGTGGAGCGCCAAAA
GCGGCTTGCCGCTGTGCAGCGTGCACGCGCACGCGCACTGGGTCAACTCG
CTGACGCTGTGCAGCGACTACGTGCTCAAGTGCGGCGCGTTTGCGTCGCT
GGACGAGCAAAAGGGCTACTCGCGCACCAAGCTGTCGCAGCAACAGGCGC
TGCTGCGCTACCAAAAGGTGCTGCGCGAGGGCACGGGCGGCAAGGAGCTG
ATGGTGAGCGGGTCGGATGACTTCACGCTGATGCTGTGGCAGGATATGTG
GAAGGCGGGCGCGCGCATGCAGCCCGTGGCGCGCATGACGGGCCACCAGC
AGCTGGTGAACTGCGTGGCGTTCAGCCCGGATGGGCGCTACATTGCGTCG
GGGAGCTTTGATAAGAGCGTGCGGCTTTGGGACGGGTGTAGTGGCAAGTT
CTGCTTCACGTTTCGAGGCCATGTGGCGGCGGTGTATCGCGTGGTGTGGT
CAGCTGATGGGCGGCTGTTGATGAGCGGCTCCAAGGATAGTACGTGCAAG
ATTTGGGATGTGCACAACAGAAAGTTGAAGATGGACCTGCCGGGACACAG
CGATGAGGTGTACACGGTGGATTGGAGCTCGGATGGCAGCAGGGCGGTTT
CTGCTGGCAAGGACAAGATGGTGAAGATTTGGCACCACTGA
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