Ggra5029.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5029.t1
Unique NameGgra5029.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:100275..100708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708918.1
Preferred nameNDUFB9
PFAMsComplex1_LYR
Max annot lvl2759|Eukaryota
KEGG koko:K03965,ko:K14777
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
GOsGO:0003008,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0005975,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007600,GO:0007605,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0050877,GO:0050954,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue5.17e-38
EggNOG OGsKOG3466@1|root,KOG3466@2759|Eukaryota
EC3.6.4.13
Descriptionmitochondrial electron transport, NADH to ubiquinone
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5029Ggra5029Gracilaria gracilis GNS1m malegenetig00000069_pilon 100275..100708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5029.t1Ggra5029.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 100275..100708 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5029.t1.start1Ggra5029.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 100275..100277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5029.t1.CDS1Ggra5029.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 100275..100598 +
Ggra5029.t1.CDS2Ggra5029.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 100664..100708 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5029.t1.exon1Ggra5029.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 100275..100598 +
Ggra5029.t1.exon2Ggra5029.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 100664..100708 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5029.t1.intron1Ggra5029.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 100599..100663 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5029.t1.stop1Ggra5029.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 100706..100708 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5029.t1 ID=Ggra5029.t1|Name=Ggra5029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=123bp
MGAAASMHASRAAAWAPDISHAQRVTRLYRAALRTSRDWTIDYDMWVAEC
EHIQQRFRANQHKSLMDGKMLVDKGMAELFRMRHPDPYIPIYKPGSSSYQ
RNVPPPPELTHTSMPPPHQAIQ*
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spliced messenger RNA

>Ggra5029.t1 ID=Ggra5029.t1|Name=Ggra5029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp|location=Sequence derived from alignment at tig00000069_pilon:100275..100708+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCGCCGCCTCCATGCACGCCTCGCGCGCCGCCGCATGGGCGCC
GGACATCTCGCACGCGCAGCGCGTCACGCGGCTGTACCGCGCCGCGCTGC
GCACGTCGCGCGACTGGACCATCGACTATGACATGTGGGTGGCCGAGTGC
GAGCACATTCAGCAGCGCTTTCGCGCCAACCAGCACAAGTCGCTCATGGA
CGGCAAGATGCTGGTGGACAAGGGCATGGCCGAGCTCTTCCGCATGAGGC
ACCCGGATCCGTACATCCCCATCTACAAGCCGGGCTCTTCCAGCTACCAG
CGCAACGTGCCGCCGCCGCCAGAGCTCACTCACACCAGCATGCCGCCACC
GCATCAAGCCATTCAGTAG
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protein sequence of Ggra5029.t1

>Ggra5029.t1 ID=Ggra5029.t1|Name=Ggra5029.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=123bp
MGAAASMHASRAAAWAPDISHAQRVTRLYRAALRTSRDWTIDYDMWVAEC
EHIQQRFRANQHKSLMDGKMLVDKGMAELFRMRHPDPYIPIYKPGSSSYQ
RNVPPPPELTHTSMPPPHQAIQ*
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mRNA from alignment at tig00000069_pilon:100275..100708+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5029.t1 ID=Ggra5029.t1|Name=Ggra5029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp|location=Sequence derived from alignment at tig00000069_pilon:100275..100708+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGCCGCCTCCATGCACGCCTCGCGCGCCGCCGCATGGGCGCC
GGACATCTCGCACGCGCAGCGCGTCACGCGGCTGTACCGCGCCGCGCTGC
GCACGTCGCGCGACTGGACCATCGACTATGACATGTGGGTGGCCGAGTGC
GAGCACATTCAGCAGCGCTTTCGCGCCAACCAGCACAAGTCGCTCATGGA
CGGCAAGATGCTGGTGGACAAGGGCATGGCCGAGCTCTTCCGCATGAGGC
ACCCGGATCCGTACATCCCCATCTACAAGCCGGGCTCTTCCAGCTACCAG
CGCAACGTGCCGCCGCCGCCAGAGGTATGTCGTCTTGTCTTTTTCTTCTT
CTTTTCGCTCCTTGTGCTGACTTGCTTGTGTTTTCAAAGCTCACTCACAC
CAGCATGCCGCCACCGCATCAAGCCATTCAGTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:100275..100708+

>Ggra5029.t1 ID=Ggra5029.t1|Name=Ggra5029.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=369bp|location=Sequence derived from alignment at tig00000069_pilon:100275..100708+ (Gracilaria gracilis GNS1m male)
ATGGGCGCCGCCGCCTCCATGCACGCCTCGCGCGCCGCCGCATGGGCGCC
GGACATCTCGCACGCGCAGCGCGTCACGCGGCTGTACCGCGCCGCGCTGC
GCACGTCGCGCGACTGGACCATCGACTATGACATGTGGGTGGCCGAGTGC
GAGCACATTCAGCAGCGCTTTCGCGCCAACCAGCACAAGTCGCTCATGGA
CGGCAAGATGCTGGTGGACAAGGGCATGGCCGAGCTCTTCCGCATGAGGC
ACCCGGATCCGTACATCCCCATCTACAAGCCGGGCTCTTCCAGCTACCAG
CGCAACGTGCCGCCGCCGCCAGAGCTCACTCACACCAGCATGCCGCCACC
GCATCAAGCCATTCAGTAG
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