Ggra5028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5028.t1
Unique NameGgra5028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:98030..99547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5028Ggra5028Gracilaria gracilis GNS1m malegenetig00000069_pilon 98030..99547 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5028.t1.stop1Ggra5028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 98030..98032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5028.t1.CDS1Ggra5028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 98030..99547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5028.t1.exon1Ggra5028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 98030..99547 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5028.t1.start1Ggra5028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 99545..99547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5028.t1Ggra5028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 98030..99547 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5028.t1 ID=Ggra5028.t1|Name=Ggra5028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MDTAFNRSTDVFHDSSATIHSSFDHQPDSRCTLETSSLQHDVEYHSNPSL
HPYPTPSIQNLLHGALPAAHTHLSRDHQHTTATTLTHPHRSYEPPAAHQM
QYLPPVALPAPSALPPATALADECIYVYVIIALHESVPDSVWNRFQSSLF
ITQPVTEEQMKQCNAPNSFACFQQLVQIASHNCKSIREISARIFINNYLH
HTQQRFLFQIFLQLAPPDCAMASPSAHLPPPWDKLDVVTFIQLPSTGQIL
RPIGRELLYEDALCSSADGMFLGSFTIHDTQLYHQVPSEDTLKAQEEGQY
NGLVPPALDVMQQQVSIVDREHIVQEANGARAGRPSHRLTGQLLMTRSQV
EKILEIRARWHGLSPRQRRDNVAASDFYTFFTLNRDETAECLGVCATWLK
DAIRAHGVNVWPGRPLRRSGAALQTLKENIASMRAALKFSHPSVGETERM
LEEVKENERKVEQVLKVRMGIVKANVSEQYYSAFLMANGEQYLNPEWNAL
PPFSL*
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spliced messenger RNA

>Ggra5028.t1 ID=Ggra5028.t1|Name=Ggra5028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000069_pilon:98030..99547- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACTGCATTCAACCGTAGCACAGATGTCTTCCATGATTCCTCCGC
AACCATTCACAGCTCTTTCGACCACCAGCCCGACAGCCGCTGCACTTTAG
AAACCTCCTCACTGCAACATGACGTCGAATATCATTCCAACCCCTCTCTT
CACCCGTACCCCACACCATCCATACAAAACCTGTTGCATGGCGCCCTGCC
CGCCGCCCACACCCACCTCAGTCGTGACCATCAGCACACAACCGCCACCA
CTCTCACACACCCTCACCGCAGCTATGAGCCGCCTGCAGCGCATCAAATG
CAATATCTGCCGCCCGTCGCTCTCCCCGCGCCGTCCGCGCTGCCTCCAGC
CACCGCACTAGCCGACGAGTGCATTTACGTGTACGTCATCATAGCGCTGC
ATGAATCGGTGCCCGACTCTGTATGGAACCGCTTTCAAAGCTCTCTTTTC
ATCACGCAGCCCGTCACAGAGGAGCAGATGAAGCAGTGCAACGCGCCCAA
TTCGTTTGCTTGCTTTCAGCAGCTGGTTCAAATCGCGTCGCACAACTGCA
AAAGCATCCGCGAAATCTCCGCCAGGATTTTCATCAACAACTACCTGCAC
CACACTCAGCAGCGCTTTTTGTTCCAAATCTTCCTGCAGCTCGCGCCGCC
CGACTGCGCCATGGCCTCCCCCTCCGCGCACCTGCCGCCGCCGTGGGACA
AATTGGACGTGGTCACTTTCATACAGCTGCCTTCTACGGGGCAGATTCTG
CGCCCGATTGGAAGAGAGCTTTTATACGAGGACGCGCTTTGTTCATCGGC
CGATGGCATGTTCTTGGGCTCGTTCACCATTCATGACACGCAGCTGTACC
ACCAAGTTCCGTCCGAGGACACGCTCAAGGCGCAGGAAGAAGGGCAGTAC
AACGGGTTGGTGCCGCCAGCGTTGGACGTGATGCAGCAACAAGTGTCAAT
CGTGGACCGGGAGCACATTGTGCAGGAGGCGAACGGGGCAAGGGCCGGGC
GGCCGTCGCACCGATTGACTGGACAGTTGCTGATGACGCGCTCGCAAGTG
GAGAAGATTCTGGAAATCCGCGCCAGATGGCACGGACTGAGCCCGCGGCA
ACGAAGAGACAACGTTGCGGCGAGTGACTTTTACACGTTTTTCACGCTGA
ACCGCGACGAAACGGCCGAGTGTCTTGGCGTGTGCGCAACGTGGTTGAAG
GACGCCATTCGGGCGCACGGCGTGAACGTGTGGCCCGGGCGGCCGCTGAG
AAGAAGCGGAGCGGCGCTGCAGACGCTGAAGGAAAACATTGCGTCCATGA
GGGCGGCGTTGAAGTTTTCGCACCCGTCGGTGGGAGAGACGGAGCGCATG
CTGGAAGAGGTGAAGGAGAATGAGCGGAAGGTTGAACAGGTGCTCAAGGT
GAGAATGGGAATTGTAAAGGCAAACGTGAGCGAGCAGTATTATAGCGCGT
TTTTAATGGCGAATGGTGAGCAATATCTGAACCCAGAGTGGAACGCGCTG
CCCCCGTTTTCGCTGTGA
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protein sequence of Ggra5028.t1

>Ggra5028.t1 ID=Ggra5028.t1|Name=Ggra5028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MDTAFNRSTDVFHDSSATIHSSFDHQPDSRCTLETSSLQHDVEYHSNPSL
HPYPTPSIQNLLHGALPAAHTHLSRDHQHTTATTLTHPHRSYEPPAAHQM
QYLPPVALPAPSALPPATALADECIYVYVIIALHESVPDSVWNRFQSSLF
ITQPVTEEQMKQCNAPNSFACFQQLVQIASHNCKSIREISARIFINNYLH
HTQQRFLFQIFLQLAPPDCAMASPSAHLPPPWDKLDVVTFIQLPSTGQIL
RPIGRELLYEDALCSSADGMFLGSFTIHDTQLYHQVPSEDTLKAQEEGQY
NGLVPPALDVMQQQVSIVDREHIVQEANGARAGRPSHRLTGQLLMTRSQV
EKILEIRARWHGLSPRQRRDNVAASDFYTFFTLNRDETAECLGVCATWLK
DAIRAHGVNVWPGRPLRRSGAALQTLKENIASMRAALKFSHPSVGETERM
LEEVKENERKVEQVLKVRMGIVKANVSEQYYSAFLMANGEQYLNPEWNAL
PPFSL*
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mRNA from alignment at tig00000069_pilon:98030..99547-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5028.t1 ID=Ggra5028.t1|Name=Ggra5028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000069_pilon:98030..99547- (Gracilaria gracilis GNS1m male)
ATGGATACTGCATTCAACCGTAGCACAGATGTCTTCCATGATTCCTCCGC
AACCATTCACAGCTCTTTCGACCACCAGCCCGACAGCCGCTGCACTTTAG
AAACCTCCTCACTGCAACATGACGTCGAATATCATTCCAACCCCTCTCTT
CACCCGTACCCCACACCATCCATACAAAACCTGTTGCATGGCGCCCTGCC
CGCCGCCCACACCCACCTCAGTCGTGACCATCAGCACACAACCGCCACCA
CTCTCACACACCCTCACCGCAGCTATGAGCCGCCTGCAGCGCATCAAATG
CAATATCTGCCGCCCGTCGCTCTCCCCGCGCCGTCCGCGCTGCCTCCAGC
CACCGCACTAGCCGACGAGTGCATTTACGTGTACGTCATCATAGCGCTGC
ATGAATCGGTGCCCGACTCTGTATGGAACCGCTTTCAAAGCTCTCTTTTC
ATCACGCAGCCCGTCACAGAGGAGCAGATGAAGCAGTGCAACGCGCCCAA
TTCGTTTGCTTGCTTTCAGCAGCTGGTTCAAATCGCGTCGCACAACTGCA
AAAGCATCCGCGAAATCTCCGCCAGGATTTTCATCAACAACTACCTGCAC
CACACTCAGCAGCGCTTTTTGTTCCAAATCTTCCTGCAGCTCGCGCCGCC
CGACTGCGCCATGGCCTCCCCCTCCGCGCACCTGCCGCCGCCGTGGGACA
AATTGGACGTGGTCACTTTCATACAGCTGCCTTCTACGGGGCAGATTCTG
CGCCCGATTGGAAGAGAGCTTTTATACGAGGACGCGCTTTGTTCATCGGC
CGATGGCATGTTCTTGGGCTCGTTCACCATTCATGACACGCAGCTGTACC
ACCAAGTTCCGTCCGAGGACACGCTCAAGGCGCAGGAAGAAGGGCAGTAC
AACGGGTTGGTGCCGCCAGCGTTGGACGTGATGCAGCAACAAGTGTCAAT
CGTGGACCGGGAGCACATTGTGCAGGAGGCGAACGGGGCAAGGGCCGGGC
GGCCGTCGCACCGATTGACTGGACAGTTGCTGATGACGCGCTCGCAAGTG
GAGAAGATTCTGGAAATCCGCGCCAGATGGCACGGACTGAGCCCGCGGCA
ACGAAGAGACAACGTTGCGGCGAGTGACTTTTACACGTTTTTCACGCTGA
ACCGCGACGAAACGGCCGAGTGTCTTGGCGTGTGCGCAACGTGGTTGAAG
GACGCCATTCGGGCGCACGGCGTGAACGTGTGGCCCGGGCGGCCGCTGAG
AAGAAGCGGAGCGGCGCTGCAGACGCTGAAGGAAAACATTGCGTCCATGA
GGGCGGCGTTGAAGTTTTCGCACCCGTCGGTGGGAGAGACGGAGCGCATG
CTGGAAGAGGTGAAGGAGAATGAGCGGAAGGTTGAACAGGTGCTCAAGGT
GAGAATGGGAATTGTAAAGGCAAACGTGAGCGAGCAGTATTATAGCGCGT
TTTTAATGGCGAATGGTGAGCAATATCTGAACCCAGAGTGGAACGCGCTG
CCCCCGTTTTCGCTGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:98030..99547-

>Ggra5028.t1 ID=Ggra5028.t1|Name=Ggra5028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000069_pilon:98030..99547- (Gracilaria gracilis GNS1m male)
ATGGATACTGCATTCAACCGTAGCACAGATGTCTTCCATGATTCCTCCGC
AACCATTCACAGCTCTTTCGACCACCAGCCCGACAGCCGCTGCACTTTAG
AAACCTCCTCACTGCAACATGACGTCGAATATCATTCCAACCCCTCTCTT
CACCCGTACCCCACACCATCCATACAAAACCTGTTGCATGGCGCCCTGCC
CGCCGCCCACACCCACCTCAGTCGTGACCATCAGCACACAACCGCCACCA
CTCTCACACACCCTCACCGCAGCTATGAGCCGCCTGCAGCGCATCAAATG
CAATATCTGCCGCCCGTCGCTCTCCCCGCGCCGTCCGCGCTGCCTCCAGC
CACCGCACTAGCCGACGAGTGCATTTACGTGTACGTCATCATAGCGCTGC
ATGAATCGGTGCCCGACTCTGTATGGAACCGCTTTCAAAGCTCTCTTTTC
ATCACGCAGCCCGTCACAGAGGAGCAGATGAAGCAGTGCAACGCGCCCAA
TTCGTTTGCTTGCTTTCAGCAGCTGGTTCAAATCGCGTCGCACAACTGCA
AAAGCATCCGCGAAATCTCCGCCAGGATTTTCATCAACAACTACCTGCAC
CACACTCAGCAGCGCTTTTTGTTCCAAATCTTCCTGCAGCTCGCGCCGCC
CGACTGCGCCATGGCCTCCCCCTCCGCGCACCTGCCGCCGCCGTGGGACA
AATTGGACGTGGTCACTTTCATACAGCTGCCTTCTACGGGGCAGATTCTG
CGCCCGATTGGAAGAGAGCTTTTATACGAGGACGCGCTTTGTTCATCGGC
CGATGGCATGTTCTTGGGCTCGTTCACCATTCATGACACGCAGCTGTACC
ACCAAGTTCCGTCCGAGGACACGCTCAAGGCGCAGGAAGAAGGGCAGTAC
AACGGGTTGGTGCCGCCAGCGTTGGACGTGATGCAGCAACAAGTGTCAAT
CGTGGACCGGGAGCACATTGTGCAGGAGGCGAACGGGGCAAGGGCCGGGC
GGCCGTCGCACCGATTGACTGGACAGTTGCTGATGACGCGCTCGCAAGTG
GAGAAGATTCTGGAAATCCGCGCCAGATGGCACGGACTGAGCCCGCGGCA
ACGAAGAGACAACGTTGCGGCGAGTGACTTTTACACGTTTTTCACGCTGA
ACCGCGACGAAACGGCCGAGTGTCTTGGCGTGTGCGCAACGTGGTTGAAG
GACGCCATTCGGGCGCACGGCGTGAACGTGTGGCCCGGGCGGCCGCTGAG
AAGAAGCGGAGCGGCGCTGCAGACGCTGAAGGAAAACATTGCGTCCATGA
GGGCGGCGTTGAAGTTTTCGCACCCGTCGGTGGGAGAGACGGAGCGCATG
CTGGAAGAGGTGAAGGAGAATGAGCGGAAGGTTGAACAGGTGCTCAAGGT
GAGAATGGGAATTGTAAAGGCAAACGTGAGCGAGCAGTATTATAGCGCGT
TTTTAATGGCGAATGGTGAGCAATATCTGAACCCAGAGTGGAACGCGCTG
CCCCCGTTTTCGCTGTGA
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