Ggra5027.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5027.t1
Unique NameGgra5027.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:96550..97902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707791.1
PFAMsHydrolase_4
Max annot lvl2759|Eukaryota
Evalue3.86e-103
EggNOG OGsCOG1073@1|root,KOG1552@2759|Eukaryota
Descriptionpalmitoyl-(protein) hydrolase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5027Ggra5027Gracilaria gracilis GNS1m malegenetig00000069_pilon 96550..97902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5027.t1Ggra5027.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 96550..97902 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5027.t1.start1Ggra5027.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 96550..96552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5027.t1.CDS1Ggra5027.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 96550..96633 +
Ggra5027.t1.CDS2Ggra5027.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 96751..97902 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5027.t1.exon1Ggra5027.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 96550..96633 +
Ggra5027.t1.exon2Ggra5027.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 96751..97902 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5027.t1.intron1Ggra5027.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 96634..96750 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5027.t1.stop1Ggra5027.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 97900..97902 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5027.t1 ID=Ggra5027.t1|Name=Ggra5027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MHQHTLARAAAAAPSPSPSPSPSPSPHALASKERQVRAEVGEFIQSPHLL
YRPLSLGVALAAPLAVPLCFMPRAALLAYVLLAAAWYVACLLLFATEVAM
RPPWYKTGLPAKDLPPYWSRFVHDPSTDLQLSYRDVCFPTASGRLLRGWY
IGNSPRVIVFVHGVGRDRRSFLRHARHFVAQGYAVLLFDLSEHGLSDVSV
PDSPRGSLFGAREQHDVLAAVHFVVHQQNASCVALVGTSCGASSAIQAAA
LRPHHIVGVVAENPFARADDLLRHHLHQLSENYLSQNSHQTVRNALFWLA
GRVLMMRMGYLCSSFGAVDAAAQLKCPLLVAHSTADDVVPYQHGVSIFES
ARRCLGQRAHFLKFDDAAHCALYDKDPVLWTSHVLPFVNDAFKRYSASAP
VQSLHMATKCD*
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spliced messenger RNA

>Ggra5027.t1 ID=Ggra5027.t1|Name=Ggra5027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000069_pilon:96550..97902+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCAGCACACGCTCGCGCGCGCGGCGGCGGCGGcgccgtcgccgtc
gccgtcgccgtcgccgtcgccgtcgccgCAcgcgCTGGCAAGCAAAGAGC
GGCAGGTGCGCGCCGAGGTGGGCGAGTTCATACAGTCGCCGCACCTGCTG
TACCGCCCGCTCAGTCTGGGCGTGGCGCTCGCGGCGCCGCTGGCCGTGCC
GCTGTGCTTCATGCCGCGCGCCGCGCTGCTGGCGTACGTGCTGCTGGCCG
CCGCGTGGTACGTCGCTTGCTTGTTGCTGTTCGCCACCGAGGTGGCCATG
CGCCCGCCGTGGTACAAGACCGGCCTGCCTGCAAAGGACCTTCCGCCCTA
CTGGAGTCGCTTCGTGCATGATCCGAGCACCGACTTGCAGCTGTCGTACC
GCGATGTGTGCTTTCCTACCGCCAGCGGCCGCCTGTTGAGGGGCTGGTAC
ATTGGCAACTCGCCGCGCGTCATCGTGTTTGTGCACGGTGTTGGACGCGA
CCGCCGCAGCTTTTTGCGCCATGCGCGCCACTTTGTGGCGCAGGGCTACG
CCGTGCTGCTGTTCGATCTGTCCGAGCACGGCTTGTCGGACGTGAGTGTA
CCAGACTCGCCGCGCGGCAGCTTGTTTGGCGCCAGGGAGCAGCACGACGT
GCTGGCCGCCGTACACTTTGTGGTGCATCAACAAAACGCCTCCTGCGTCG
CCTTGGTGGGCACCTCCTGCGGCGCCTCCAGCGCCATACAGGCCGCCGCG
CTGCGCCCGCATCACATCGTGGGCGTGGTGGCCGAAAACCCGTTTGCGCG
CGCGGACGACCTGTTGCGCCACCACTTGCACCAGCTGTCGGAGAACTATC
TCAGCCAAAACAGCCACCAGACGGTGCGCAACGCGCTGTTCTGGCTGGCC
GGGCGCGTGCTCATGATGCGCATGGGCTACCTCTGCTCGTCGTTTGGCGC
CGTTGACGCCGCTGCGCAGCTCAAGTGCCCGCTGCTGGTGGCGCATTCCA
CCGCCGATGACGTCGTTCCGTACCAACACGGCGTGAGCATCTTCGAGAGC
GCGCGCCGCTGCCTGGGGCAACGCGCGCACTTTTTGAAGTTTGACGATGC
CGCACACTGCGCGCTGTATGACAAGGACCCCGTGCTGTGGACTTCTCACG
TGCTGCCGTTTGTCAACGATGCGTTCAAGCGCTACAGCGCCTCTGCGCCC
GTTCAATCGTTGCATATGGCTACCAAATGCGATTAG
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protein sequence of Ggra5027.t1

>Ggra5027.t1 ID=Ggra5027.t1|Name=Ggra5027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MHQHTLARAAAAAPSPSPSPSPSPSPHALASKERQVRAEVGEFIQSPHLL
YRPLSLGVALAAPLAVPLCFMPRAALLAYVLLAAAWYVACLLLFATEVAM
RPPWYKTGLPAKDLPPYWSRFVHDPSTDLQLSYRDVCFPTASGRLLRGWY
IGNSPRVIVFVHGVGRDRRSFLRHARHFVAQGYAVLLFDLSEHGLSDVSV
PDSPRGSLFGAREQHDVLAAVHFVVHQQNASCVALVGTSCGASSAIQAAA
LRPHHIVGVVAENPFARADDLLRHHLHQLSENYLSQNSHQTVRNALFWLA
GRVLMMRMGYLCSSFGAVDAAAQLKCPLLVAHSTADDVVPYQHGVSIFES
ARRCLGQRAHFLKFDDAAHCALYDKDPVLWTSHVLPFVNDAFKRYSASAP
VQSLHMATKCD*
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mRNA from alignment at tig00000069_pilon:96550..97902+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5027.t1 ID=Ggra5027.t1|Name=Ggra5027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000069_pilon:96550..97902+ (Gracilaria gracilis GNS1m male)
ATGCACCAGCACACGCTCGCGCGCGCGGCGGCGGCGGcgccgtcgccgtc
gccgtcgccgtcgccgtcgccgtcgccgCAcgcggtgcggcagctggcgc
tgtcgctgcgctcgcgcgcgcgcggcatgcggcgcgcgctggcggcggcg
cgccactcacagcgccgactgcggcactcgctggcgccgctgcgcgcAGA
GCTGGCAAGCAAAGAGCGGCAGGTGCGCGCCGAGGTGGGCGAGTTCATAC
AGTCGCCGCACCTGCTGTACCGCCCGCTCAGTCTGGGCGTGGCGCTCGCG
GCGCCGCTGGCCGTGCCGCTGTGCTTCATGCCGCGCGCCGCGCTGCTGGC
GTACGTGCTGCTGGCCGCCGCGTGGTACGTCGCTTGCTTGTTGCTGTTCG
CCACCGAGGTGGCCATGCGCCCGCCGTGGTACAAGACCGGCCTGCCTGCA
AAGGACCTTCCGCCCTACTGGAGTCGCTTCGTGCATGATCCGAGCACCGA
CTTGCAGCTGTCGTACCGCGATGTGTGCTTTCCTACCGCCAGCGGCCGCC
TGTTGAGGGGCTGGTACATTGGCAACTCGCCGCGCGTCATCGTGTTTGTG
CACGGTGTTGGACGCGACCGCCGCAGCTTTTTGCGCCATGCGCGCCACTT
TGTGGCGCAGGGCTACGCCGTGCTGCTGTTCGATCTGTCCGAGCACGGCT
TGTCGGACGTGAGTGTACCAGACTCGCCGCGCGGCAGCTTGTTTGGCGCC
AGGGAGCAGCACGACGTGCTGGCCGCCGTACACTTTGTGGTGCATCAACA
AAACGCCTCCTGCGTCGCCTTGGTGGGCACCTCCTGCGGCGCCTCCAGCG
CCATACAGGCCGCCGCGCTGCGCCCGCATCACATCGTGGGCGTGGTGGCC
GAAAACCCGTTTGCGCGCGCGGACGACCTGTTGCGCCACCACTTGCACCA
GCTGTCGGAGAACTATCTCAGCCAAAACAGCCACCAGACGGTGCGCAACG
CGCTGTTCTGGCTGGCCGGGCGCGTGCTCATGATGCGCATGGGCTACCTC
TGCTCGTCGTTTGGCGCCGTTGACGCCGCTGCGCAGCTCAAGTGCCCGCT
GCTGGTGGCGCATTCCACCGCCGATGACGTCGTTCCGTACCAACACGGCG
TGAGCATCTTCGAGAGCGCGCGCCGCTGCCTGGGGCAACGCGCGCACTTT
TTGAAGTTTGACGATGCCGCACACTGCGCGCTGTATGACAAGGACCCCGT
GCTGTGGACTTCTCACGTGCTGCCGTTTGTCAACGATGCGTTCAAGCGCT
ACAGCGCCTCTGCGCCCGTTCAATCGTTGCATATGGCTACCAAATGCGAT
TAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:96550..97902+

>Ggra5027.t1 ID=Ggra5027.t1|Name=Ggra5027.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000069_pilon:96550..97902+ (Gracilaria gracilis GNS1m male)
ATGCACCAGCACACGCTCGCGCGCGCGGCGGCGGCGGcgccgtcgccgtc
gccgtcgccgtcgccgtcgccgtcgccgCAcgcgCTGGCAAGCAAAGAGC
GGCAGGTGCGCGCCGAGGTGGGCGAGTTCATACAGTCGCCGCACCTGCTG
TACCGCCCGCTCAGTCTGGGCGTGGCGCTCGCGGCGCCGCTGGCCGTGCC
GCTGTGCTTCATGCCGCGCGCCGCGCTGCTGGCGTACGTGCTGCTGGCCG
CCGCGTGGTACGTCGCTTGCTTGTTGCTGTTCGCCACCGAGGTGGCCATG
CGCCCGCCGTGGTACAAGACCGGCCTGCCTGCAAAGGACCTTCCGCCCTA
CTGGAGTCGCTTCGTGCATGATCCGAGCACCGACTTGCAGCTGTCGTACC
GCGATGTGTGCTTTCCTACCGCCAGCGGCCGCCTGTTGAGGGGCTGGTAC
ATTGGCAACTCGCCGCGCGTCATCGTGTTTGTGCACGGTGTTGGACGCGA
CCGCCGCAGCTTTTTGCGCCATGCGCGCCACTTTGTGGCGCAGGGCTACG
CCGTGCTGCTGTTCGATCTGTCCGAGCACGGCTTGTCGGACGTGAGTGTA
CCAGACTCGCCGCGCGGCAGCTTGTTTGGCGCCAGGGAGCAGCACGACGT
GCTGGCCGCCGTACACTTTGTGGTGCATCAACAAAACGCCTCCTGCGTCG
CCTTGGTGGGCACCTCCTGCGGCGCCTCCAGCGCCATACAGGCCGCCGCG
CTGCGCCCGCATCACATCGTGGGCGTGGTGGCCGAAAACCCGTTTGCGCG
CGCGGACGACCTGTTGCGCCACCACTTGCACCAGCTGTCGGAGAACTATC
TCAGCCAAAACAGCCACCAGACGGTGCGCAACGCGCTGTTCTGGCTGGCC
GGGCGCGTGCTCATGATGCGCATGGGCTACCTCTGCTCGTCGTTTGGCGC
CGTTGACGCCGCTGCGCAGCTCAAGTGCCCGCTGCTGGTGGCGCATTCCA
CCGCCGATGACGTCGTTCCGTACCAACACGGCGTGAGCATCTTCGAGAGC
GCGCGCCGCTGCCTGGGGCAACGCGCGCACTTTTTGAAGTTTGACGATGC
CGCACACTGCGCGCTGTATGACAAGGACCCCGTGCTGTGGACTTCTCACG
TGCTGCCGTTTGTCAACGATGCGTTCAAGCGCTACAGCGCCTCTGCGCCC
GTTCAATCGTTGCATATGGCTACCAAATGCGATTAG
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