Ggra5025.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5025.t1
Unique Name	Ggra5025.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	725

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:93392..95566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	63737.Npun_R5688
PFAMs	BPD_transp_1
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K02050
KEGG TC	3.A.1.16,3.A.1.17
KEGG Module	M00188
Evalue	5.64e-188
EggNOG OGs	COG4986@1\|root,COG4986@2\|Bacteria,1G28U@1117\|Cyanobacteria,1HMWS@1161\|Nostocales
Description	PFAM binding-protein-dependent transport systems inner membrane component
COG category	P
BRITE	ko00000,ko00002,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5025	Ggra5025	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 93392..95566 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5025.t1.start1	Ggra5025.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 93392..93394 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5025.t1.CDS1	Ggra5025.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 93392..95566 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5025.t1.exon1	Ggra5025.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 93392..95566 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5025.t1.stop1	Ggra5025.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 95564..95566 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5025.t1	Ggra5025.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 93392..95566 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:93392..95566+
coding sequence from alignment at tig00000069_pilon:93392..95566+

mRNA sequence

>Ggra5025.t1 ID=Ggra5025.t1|Name=Ggra5025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=725bp
MTAFVNLIPLTHCSFTPCSTNRKCVRSRAFRPLHATAPWRRADRIRGAFM
SDKDSINSRAKNDEECLQEQEIRDEEADEPFVLEDDSHVEDDILIESEDD
DRPVIWNKLPSPRALFQTSYLTDVVIVFAIVAIVYGLVLTTGSLFSATPY
SGLVIDTSLKVLPWYAAQSLTRMVAGYVVSLIFSLGYAYVAYRIKFAARL
LMLVIDVLQSIPLLSFLPGVVLGLIAIFPGARIGVELAAVLLLFTSMAWN
MLLGFYQSLRCIPHDLHDVSDSFRLSAWKRFWVLELPAGAIGLVWNSIIS
VAGGWFFLISIESFELGNRDFKLPGIGSFLAVAAETCNYRAIFAGVSFII
AIIVVIDFLVWRPLIAWSTKFTYGSTHEENKPRSIVLNTFQKSVLVRQVH
SSLVAPAWEKFVNVSFGNGGAGELVRSTEGKKAAAAAAKKERGSAYLEGN
GGAMMVSAVRVCARALSYVGEVLSPTVAKVVPVVLLCGGCVGTGYGVWQA
GRLVHALEWEAWVLIGTAAMATFGRVIAALSLSLLWTVPAGVAIGRNAKL
SATVQPMVQIAASVPATALFPFVLLFLARLGGGLQVGSVALMMLGTMWYV
LFNVIAGAQAIPAELFDVDSVYNKEGVLKRWKKLVLPGIFPYLITGVVTA
VGGAWNASIVSEYVVFQGGVLKTHGLGALISEAAASGNYALLLAGTVVMS
VLVLLTNKFVWGPLYRLAESKYRM*

spliced messenger RNA

>Ggra5025.t1 ID=Ggra5025.t1|Name=Ggra5025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2175bp|location=Sequence derived from alignment at tig00000069_pilon:93392..95566+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGTTTGTGAATTTGATTCCTTTAACTCATTGCTCGTTCACGCC
TTGCTCAACTAATCGAAAATGTGTAAGATCTCGCGCTTTCCGCCCGCTTC
ATGCAACCGCTCCATGGAGACGGGCAGATCGTATTCGTGGCGCGTTTATG
AGCGACAAGGATAGCATCAACTCCAGAGCAAAAAACGATGAAGAATGCTT
GCAAGAACAGGAAATTCGTGATGAAGAAGCAGATGAACCGTTTGTTCTTG
AAGATGATTCTCATGTGGAAGATGACATTCTTATTGAATCCGAAGATGAT
GACAGACCTGTGATATGGAATAAGCTGCCTTCGCCCAGAGCTCTTTTCCA
AACGTCCTATCTCACCGATGTTGTTATTGTGTTTGCTATTGTTGCTATTG
TATACGGACTGGTGTTGACCACAGGAAGTTTGTTTTCAGCCACCCCTTAT
TCTGGTTTGGTTATTGATACTTCTCTCAAGGTACTTCCATGGTACGCCGC
GCAGTCACTCACACGCATGGTTGCGGGCTACGTTGTGTCGTTAATATTCT
CACTCGGTTATGCGTATGTTGCTTATCGTATCAAGTTTGCAGCTAGATTA
CTGATGCTGGTGATTGATGTATTGCAATCCATTCCTTTGCTTTCGTTCCT
TCCTGGCGTTGTACTGGGCTTGATCGCAATCTTTCCGGGGGCGAGAATTG
GAGTGGAGTTGGCTGCTGTGTTGTTGCTGTTTACAAGCATGGCTTGGAAT
ATGCTACTCGGCTTCTACCAAAGCCTGCGTTGTATTCCGCATGATCTACA
TGACGTTTCAGACTCATTCCGACTGTCAGCTTGGAAGCGCTTCTGGGTGC
TTGAATTGCCGGCAGGCGCGATTGGTCTTGTGTGGAATTCTATCATATCC
GTGGCGGGCGGGTGGTTCTTCCTTATCTCTATCGAGAGCTTTGAGCTGGG
GAACCGGGACTTTAAACTACCTGGCATTGGGTCGTTCCTAGCGGTGGCGG
CTGAGACATGCAACTACCGCGCCATCTTTGCAGGTGTATCGTTCATCATT
GCAATCATTGTGGTTATTGATTTCCTGGTGTGGCGACCGTTGATTGCTTG
GTCAACCAAGTTTACGTACGGGTCTACGCATGAAGAAAACAAGCCGCGGT
CGATTGTGCTCAACACGTTTCAAAAGTCGGTGCTGGTGAGGCAGGTTCAC
TCTTCTCTGGTAGCGCCAGCGTGGGAGAAATTTGTGAACGTGAGCTTTGG
AAACGGTGGGGCGGGGGAGCTGGTTCGGTCAACTGAAGGCAAGAAAGCAG
CAGCAGCGGCGGCGAAGAAGGAGCGCGGCTCCGCGTACCTGGAGGGAAAT
GGCGGTGCAATGATGGTGTCCGCGGTTCGCGTGTGCGCGCGAGCGCTCTC
GTACGTGGGGGAGGTGCTGTCACCCACAGTGGCAAAAGTGGTTCCGGTGG
TGCTGCTGTGCGGCGGCTGCGTGGGCACCGGATACGGCGTGTGGCAGGCC
GGGCGGCTGGTGCACGCGCTGGAGTGGGAGGCATGGGTACTGATTGGGAC
GGCAGCAATGGCGACGTTCGGAAGGGTGATAGCAGCGTTGAGTCTGTCGC
TGCTGTGGACGGTGCCGGCCGGGGTGGCGATCGGAAGGAACGCAAAGCTG
TCAGCGACGGTGCAACCAATGGTGCAGATTGCAGCGTCGGTGCCGGCCAC
GGCGCTGTTCCCGTTCGTGCTGCTGTTTCTGGCGCGGCTGGGCGGCGGGC
TGCAGGTAGGGTCGGTGGCGCTGATGATGCTGGGCACGATGTGGTACGTG
CTGTTTAATGTGATTGCGGGGGCGCAGGCGATCCCTGCGGAGCTGTTTGA
CGTGGACAGTGTGTACAACAAGGAGGGGGTGTTGAAGCGGTGGAAGAAGC
TGGTGCTGCCGGGCATCTTCCCGTACCTGATCACGGGGGTGGTGACGGCG
GTGGGCGGGGCGTGGAACGCGTCGATTGTGTCCGAGTACGTGGTGTTCCA
GGGCGGGGTGCTGAAGACGCACGGGCTGGGAGCGCTCATCTCGGAGGCGG
CAGCGAGCGGCAACTACGCGCTGCTGCTGGCGGGCACGGTGGTGATGAGC
GTGCTGGTGCTGCTGACGAACAAGTTTGTGTGGGGGCCGCTGTATCGACT
AGCGGAAAGCAAGTACCGCATGTAA

protein sequence of Ggra5025.t1

>Ggra5025.t1 ID=Ggra5025.t1|Name=Ggra5025.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=725bp
MTAFVNLIPLTHCSFTPCSTNRKCVRSRAFRPLHATAPWRRADRIRGAFM
SDKDSINSRAKNDEECLQEQEIRDEEADEPFVLEDDSHVEDDILIESEDD
DRPVIWNKLPSPRALFQTSYLTDVVIVFAIVAIVYGLVLTTGSLFSATPY
SGLVIDTSLKVLPWYAAQSLTRMVAGYVVSLIFSLGYAYVAYRIKFAARL
LMLVIDVLQSIPLLSFLPGVVLGLIAIFPGARIGVELAAVLLLFTSMAWN
MLLGFYQSLRCIPHDLHDVSDSFRLSAWKRFWVLELPAGAIGLVWNSIIS
VAGGWFFLISIESFELGNRDFKLPGIGSFLAVAAETCNYRAIFAGVSFII
AIIVVIDFLVWRPLIAWSTKFTYGSTHEENKPRSIVLNTFQKSVLVRQVH
SSLVAPAWEKFVNVSFGNGGAGELVRSTEGKKAAAAAAKKERGSAYLEGN
GGAMMVSAVRVCARALSYVGEVLSPTVAKVVPVVLLCGGCVGTGYGVWQA
GRLVHALEWEAWVLIGTAAMATFGRVIAALSLSLLWTVPAGVAIGRNAKL
SATVQPMVQIAASVPATALFPFVLLFLARLGGGLQVGSVALMMLGTMWYV
LFNVIAGAQAIPAELFDVDSVYNKEGVLKRWKKLVLPGIFPYLITGVVTA
VGGAWNASIVSEYVVFQGGVLKTHGLGALISEAAASGNYALLLAGTVVMS
VLVLLTNKFVWGPLYRLAESKYRM*

mRNA from alignment at tig00000069_pilon:93392..95566+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5025.t1 ID=Ggra5025.t1|Name=Ggra5025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2175bp|location=Sequence derived from alignment at tig00000069_pilon:93392..95566+ (Gracilaria gracilis GNS1m male)
ATGACTGCGTTTGTGAATTTGATTCCTTTAACTCATTGCTCGTTCACGCC
TTGCTCAACTAATCGAAAATGTGTAAGATCTCGCGCTTTCCGCCCGCTTC
ATGCAACCGCTCCATGGAGACGGGCAGATCGTATTCGTGGCGCGTTTATG
AGCGACAAGGATAGCATCAACTCCAGAGCAAAAAACGATGAAGAATGCTT
GCAAGAACAGGAAATTCGTGATGAAGAAGCAGATGAACCGTTTGTTCTTG
AAGATGATTCTCATGTGGAAGATGACATTCTTATTGAATCCGAAGATGAT
GACAGACCTGTGATATGGAATAAGCTGCCTTCGCCCAGAGCTCTTTTCCA
AACGTCCTATCTCACCGATGTTGTTATTGTGTTTGCTATTGTTGCTATTG
TATACGGACTGGTGTTGACCACAGGAAGTTTGTTTTCAGCCACCCCTTAT
TCTGGTTTGGTTATTGATACTTCTCTCAAGGTACTTCCATGGTACGCCGC
GCAGTCACTCACACGCATGGTTGCGGGCTACGTTGTGTCGTTAATATTCT
CACTCGGTTATGCGTATGTTGCTTATCGTATCAAGTTTGCAGCTAGATTA
CTGATGCTGGTGATTGATGTATTGCAATCCATTCCTTTGCTTTCGTTCCT
TCCTGGCGTTGTACTGGGCTTGATCGCAATCTTTCCGGGGGCGAGAATTG
GAGTGGAGTTGGCTGCTGTGTTGTTGCTGTTTACAAGCATGGCTTGGAAT
ATGCTACTCGGCTTCTACCAAAGCCTGCGTTGTATTCCGCATGATCTACA
TGACGTTTCAGACTCATTCCGACTGTCAGCTTGGAAGCGCTTCTGGGTGC
TTGAATTGCCGGCAGGCGCGATTGGTCTTGTGTGGAATTCTATCATATCC
GTGGCGGGCGGGTGGTTCTTCCTTATCTCTATCGAGAGCTTTGAGCTGGG
GAACCGGGACTTTAAACTACCTGGCATTGGGTCGTTCCTAGCGGTGGCGG
CTGAGACATGCAACTACCGCGCCATCTTTGCAGGTGTATCGTTCATCATT
GCAATCATTGTGGTTATTGATTTCCTGGTGTGGCGACCGTTGATTGCTTG
GTCAACCAAGTTTACGTACGGGTCTACGCATGAAGAAAACAAGCCGCGGT
CGATTGTGCTCAACACGTTTCAAAAGTCGGTGCTGGTGAGGCAGGTTCAC
TCTTCTCTGGTAGCGCCAGCGTGGGAGAAATTTGTGAACGTGAGCTTTGG
AAACGGTGGGGCGGGGGAGCTGGTTCGGTCAACTGAAGGCAAGAAAGCAG
CAGCAGCGGCGGCGAAGAAGGAGCGCGGCTCCGCGTACCTGGAGGGAAAT
GGCGGTGCAATGATGGTGTCCGCGGTTCGCGTGTGCGCGCGAGCGCTCTC
GTACGTGGGGGAGGTGCTGTCACCCACAGTGGCAAAAGTGGTTCCGGTGG
TGCTGCTGTGCGGCGGCTGCGTGGGCACCGGATACGGCGTGTGGCAGGCC
GGGCGGCTGGTGCACGCGCTGGAGTGGGAGGCATGGGTACTGATTGGGAC
GGCAGCAATGGCGACGTTCGGAAGGGTGATAGCAGCGTTGAGTCTGTCGC
TGCTGTGGACGGTGCCGGCCGGGGTGGCGATCGGAAGGAACGCAAAGCTG
TCAGCGACGGTGCAACCAATGGTGCAGATTGCAGCGTCGGTGCCGGCCAC
GGCGCTGTTCCCGTTCGTGCTGCTGTTTCTGGCGCGGCTGGGCGGCGGGC
TGCAGGTAGGGTCGGTGGCGCTGATGATGCTGGGCACGATGTGGTACGTG
CTGTTTAATGTGATTGCGGGGGCGCAGGCGATCCCTGCGGAGCTGTTTGA
CGTGGACAGTGTGTACAACAAGGAGGGGGTGTTGAAGCGGTGGAAGAAGC
TGGTGCTGCCGGGCATCTTCCCGTACCTGATCACGGGGGTGGTGACGGCG
GTGGGCGGGGCGTGGAACGCGTCGATTGTGTCCGAGTACGTGGTGTTCCA
GGGCGGGGTGCTGAAGACGCACGGGCTGGGAGCGCTCATCTCGGAGGCGG
CAGCGAGCGGCAACTACGCGCTGCTGCTGGCGGGCACGGTGGTGATGAGC
GTGCTGGTGCTGCTGACGAACAAGTTTGTGTGGGGGCCGCTGTATCGACT
AGCGGAAAGCAAGTACCGCATGTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:93392..95566+

>Ggra5025.t1 ID=Ggra5025.t1|Name=Ggra5025.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2175bp|location=Sequence derived from alignment at tig00000069_pilon:93392..95566+ (Gracilaria gracilis GNS1m male)
ATGACTGCGTTTGTGAATTTGATTCCTTTAACTCATTGCTCGTTCACGCC
TTGCTCAACTAATCGAAAATGTGTAAGATCTCGCGCTTTCCGCCCGCTTC
ATGCAACCGCTCCATGGAGACGGGCAGATCGTATTCGTGGCGCGTTTATG
AGCGACAAGGATAGCATCAACTCCAGAGCAAAAAACGATGAAGAATGCTT
GCAAGAACAGGAAATTCGTGATGAAGAAGCAGATGAACCGTTTGTTCTTG
AAGATGATTCTCATGTGGAAGATGACATTCTTATTGAATCCGAAGATGAT
GACAGACCTGTGATATGGAATAAGCTGCCTTCGCCCAGAGCTCTTTTCCA
AACGTCCTATCTCACCGATGTTGTTATTGTGTTTGCTATTGTTGCTATTG
TATACGGACTGGTGTTGACCACAGGAAGTTTGTTTTCAGCCACCCCTTAT
TCTGGTTTGGTTATTGATACTTCTCTCAAGGTACTTCCATGGTACGCCGC
GCAGTCACTCACACGCATGGTTGCGGGCTACGTTGTGTCGTTAATATTCT
CACTCGGTTATGCGTATGTTGCTTATCGTATCAAGTTTGCAGCTAGATTA
CTGATGCTGGTGATTGATGTATTGCAATCCATTCCTTTGCTTTCGTTCCT
TCCTGGCGTTGTACTGGGCTTGATCGCAATCTTTCCGGGGGCGAGAATTG
GAGTGGAGTTGGCTGCTGTGTTGTTGCTGTTTACAAGCATGGCTTGGAAT
ATGCTACTCGGCTTCTACCAAAGCCTGCGTTGTATTCCGCATGATCTACA
TGACGTTTCAGACTCATTCCGACTGTCAGCTTGGAAGCGCTTCTGGGTGC
TTGAATTGCCGGCAGGCGCGATTGGTCTTGTGTGGAATTCTATCATATCC
GTGGCGGGCGGGTGGTTCTTCCTTATCTCTATCGAGAGCTTTGAGCTGGG
GAACCGGGACTTTAAACTACCTGGCATTGGGTCGTTCCTAGCGGTGGCGG
CTGAGACATGCAACTACCGCGCCATCTTTGCAGGTGTATCGTTCATCATT
GCAATCATTGTGGTTATTGATTTCCTGGTGTGGCGACCGTTGATTGCTTG
GTCAACCAAGTTTACGTACGGGTCTACGCATGAAGAAAACAAGCCGCGGT
CGATTGTGCTCAACACGTTTCAAAAGTCGGTGCTGGTGAGGCAGGTTCAC
TCTTCTCTGGTAGCGCCAGCGTGGGAGAAATTTGTGAACGTGAGCTTTGG
AAACGGTGGGGCGGGGGAGCTGGTTCGGTCAACTGAAGGCAAGAAAGCAG
CAGCAGCGGCGGCGAAGAAGGAGCGCGGCTCCGCGTACCTGGAGGGAAAT
GGCGGTGCAATGATGGTGTCCGCGGTTCGCGTGTGCGCGCGAGCGCTCTC
GTACGTGGGGGAGGTGCTGTCACCCACAGTGGCAAAAGTGGTTCCGGTGG
TGCTGCTGTGCGGCGGCTGCGTGGGCACCGGATACGGCGTGTGGCAGGCC
GGGCGGCTGGTGCACGCGCTGGAGTGGGAGGCATGGGTACTGATTGGGAC
GGCAGCAATGGCGACGTTCGGAAGGGTGATAGCAGCGTTGAGTCTGTCGC
TGCTGTGGACGGTGCCGGCCGGGGTGGCGATCGGAAGGAACGCAAAGCTG
TCAGCGACGGTGCAACCAATGGTGCAGATTGCAGCGTCGGTGCCGGCCAC
GGCGCTGTTCCCGTTCGTGCTGCTGTTTCTGGCGCGGCTGGGCGGCGGGC
TGCAGGTAGGGTCGGTGGCGCTGATGATGCTGGGCACGATGTGGTACGTG
CTGTTTAATGTGATTGCGGGGGCGCAGGCGATCCCTGCGGAGCTGTTTGA
CGTGGACAGTGTGTACAACAAGGAGGGGGTGTTGAAGCGGTGGAAGAAGC
TGGTGCTGCCGGGCATCTTCCCGTACCTGATCACGGGGGTGGTGACGGCG
GTGGGCGGGGCGTGGAACGCGTCGATTGTGTCCGAGTACGTGGTGTTCCA
GGGCGGGGTGCTGAAGACGCACGGGCTGGGAGCGCTCATCTCGGAGGCGG
CAGCGAGCGGCAACTACGCGCTGCTGCTGGCGGGCACGGTGGTGATGAGC
GTGCTGGTGCTGCTGACGAACAAGTTTGTGTGGGGGCCGCTGTATCGACT
AGCGGAAAGCAAGTACCGCATGTAA