Ggra5021.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5021.t1
Unique NameGgra5021.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:87441..88343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G781
PFAMsPAP_fibrillin
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue2.4e-33
EggNOG OGs28JTJ@1|root,2QS7D@2759|Eukaryota
DescriptionPAP_fibrillin
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5021Ggra5021Gracilaria gracilis GNS1m malegenetig00000069_pilon 87441..88343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5021.t1Ggra5021.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 87441..88343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5021.t1.stop1Ggra5021.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 87441..87443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5021.t1.CDS1Ggra5021.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 87441..88146 -
Ggra5021.t1.CDS2Ggra5021.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 88327..88343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5021.t1.exon1Ggra5021.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 87441..88146 -
Ggra5021.t1.exon2Ggra5021.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 88327..88343 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5021.t1.intron1Ggra5021.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 88147..88326 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5021.t1.start1Ggra5021.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 88341..88343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5021.t1 ID=Ggra5021.t1|Name=Ggra5021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MAAFIADGGARLSTPQRRSVEASILALNQIGRYRRNPLTDDSIFANYSVV
YTSQRGDRPAAGGAFRSAFARAFLRDAALFQHLLPPNVAVNLVCFRALGV
LRACVALRGTFAPEQPQGNMVRVRFERPRIRVGNAVFEFGSPSSVRLAAT
YLDERVRLGVGGRGSLFVFAKDEQARSQLAQQWRYIFDAKPASPLLLLMA
PLLLVAALFGGAWPVRLGSLLGLLATMFILGRRQAQQTTS*
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spliced messenger RNA

>Ggra5021.t1 ID=Ggra5021.t1|Name=Ggra5021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000069_pilon:87441..88343- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTTCATTGCCGACGGCGGCGCGCGCCTGAGCACGCCGCAGCG
CCGCTCCGTGGAGGCGAGCATCCTTGCGCTCAACCAAATCGGGCGCTACC
GTCGCAACCCGCTCACTGACGACTCCATCTTCGCCAACTACAGCGTGGTG
TACACATCGCAGCGCGGCGACCGTCCCGCCGCGGGCGGCGCCTTTCGCTC
CGCGTTCGCGCGCGCGTTTCTGCGCGACGCCGCGCTGTTCCAGCACTTGC
TGCCGCCCAACGTCGCCGTCAACCTGGTGTGTTTCCGCGCGCTGGGCGTG
CTGCGCGCGTGCGTGGCGTTGAGGGGGACGTTTGCGCCGGAGCAGCCGCA
GGGTAACATGGTGCGCGTGCGCTTTGAGCGCCCGAGGATACGCGTGGGAA
ACGCCGTGTTTGAGTTTGGGTCGCCGTCCAGCGTGCGTCTGGCCGCGACG
TATTTGGACGAGCGAGTGCGCTTGGGCGTCGGGGGGCGCGGTAGTCTGTT
TGTGTTCGCGAAGGATGAACAGGCGCGGTCGCAATTGGCGCAGCAGTGGA
GGTACATTTTCGATGCGAAGCCGGCATCACCGCTACTGCTGCTGATGGCA
CCTCTTCTACTGGTGGCGGCGCTGTTTGGTGGCGCGTGGCCCGTGCGACT
GGGCTCGCTGCTGGGATTACTGGCAACAATGTTTATACTAGGTAGACGTC
AAGCACAGCAAACTACAAGCTAG
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protein sequence of Ggra5021.t1

>Ggra5021.t1 ID=Ggra5021.t1|Name=Ggra5021.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MAAFIADGGARLSTPQRRSVEASILALNQIGRYRRNPLTDDSIFANYSVV
YTSQRGDRPAAGGAFRSAFARAFLRDAALFQHLLPPNVAVNLVCFRALGV
LRACVALRGTFAPEQPQGNMVRVRFERPRIRVGNAVFEFGSPSSVRLAAT
YLDERVRLGVGGRGSLFVFAKDEQARSQLAQQWRYIFDAKPASPLLLLMA
PLLLVAALFGGAWPVRLGSLLGLLATMFILGRRQAQQTTS*
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mRNA from alignment at tig00000069_pilon:87441..88343-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5021.t1 ID=Ggra5021.t1|Name=Ggra5021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000069_pilon:87441..88343- (Gracilaria gracilis GNS1m male)
ATGGCCGCCTTCATTGCGTCCGCGCCGCTGTGGCGGCGCGTCTCGCAGTG
GCCGCCCCACCATCGCGGCTGCCCGCAGCGCGCCGCGTCCCGCGCGCGGC
GCGGCGCGCCTCGCGCCACGTACAGCGGCGCGTCGCCCACCTCGCCGCCG
GACGTGCGCTCACTCGTGCACGCCGTGCTGAGCGCCACCGCCAACAGCGA
CGGCGGCGCGCGCCTGAGCACGCCGCAGCGCCGCTCCGTGGAGGCGAGCA
TCCTTGCGCTCAACCAAATCGGGCGCTACCGTCGCAACCCGCTCACTGAC
GACTCCATCTTCGCCAACTACAGCGTGGTGTACACATCGCAGCGCGGCGA
CCGTCCCGCCGCGGGCGGCGCCTTTCGCTCCGCGTTCGCGCGCGCGTTTC
TGCGCGACGCCGCGCTGTTCCAGCACTTGCTGCCGCCCAACGTCGCCGTC
AACCTGGTGTGTTTCCGCGCGCTGGGCGTGCTGCGCGCGTGCGTGGCGTT
GAGGGGGACGTTTGCGCCGGAGCAGCCGCAGGGTAACATGGTGCGCGTGC
GCTTTGAGCGCCCGAGGATACGCGTGGGAAACGCCGTGTTTGAGTTTGGG
TCGCCGTCCAGCGTGCGTCTGGCCGCGACGTATTTGGACGAGCGAGTGCG
CTTGGGCGTCGGGGGGCGCGGTAGTCTGTTTGTGTTCGCGAAGGATGAAC
AGGCGCGGTCGCAATTGGCGCAGCAGTGGAGGTACATTTTCGATGCGAAG
CCGGCATCACCGCTACTGCTGCTGATGGCACCTCTTCTACTGGTGGCGGC
GCTGTTTGGTGGCGCGTGGCCCGTGCGACTGGGCTCGCTGCTGGGATTAC
TGGCAACAATGTTTATACTAGGTAGACGTCAAGCACAGCAAACTACAAGC
TAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:87441..88343-

>Ggra5021.t1 ID=Ggra5021.t1|Name=Ggra5021.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000069_pilon:87441..88343- (Gracilaria gracilis GNS1m male)
ATGGCCGCCTTCATTGCCGACGGCGGCGCGCGCCTGAGCACGCCGCAGCG
CCGCTCCGTGGAGGCGAGCATCCTTGCGCTCAACCAAATCGGGCGCTACC
GTCGCAACCCGCTCACTGACGACTCCATCTTCGCCAACTACAGCGTGGTG
TACACATCGCAGCGCGGCGACCGTCCCGCCGCGGGCGGCGCCTTTCGCTC
CGCGTTCGCGCGCGCGTTTCTGCGCGACGCCGCGCTGTTCCAGCACTTGC
TGCCGCCCAACGTCGCCGTCAACCTGGTGTGTTTCCGCGCGCTGGGCGTG
CTGCGCGCGTGCGTGGCGTTGAGGGGGACGTTTGCGCCGGAGCAGCCGCA
GGGTAACATGGTGCGCGTGCGCTTTGAGCGCCCGAGGATACGCGTGGGAA
ACGCCGTGTTTGAGTTTGGGTCGCCGTCCAGCGTGCGTCTGGCCGCGACG
TATTTGGACGAGCGAGTGCGCTTGGGCGTCGGGGGGCGCGGTAGTCTGTT
TGTGTTCGCGAAGGATGAACAGGCGCGGTCGCAATTGGCGCAGCAGTGGA
GGTACATTTTCGATGCGAAGCCGGCATCACCGCTACTGCTGCTGATGGCA
CCTCTTCTACTGGTGGCGGCGCTGTTTGGTGGCGCGTGGCCCGTGCGACT
GGGCTCGCTGCTGGGATTACTGGCAACAATGTTTATACTAGGTAGACGTC
AAGCACAGCAAACTACAAGCTAG
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