Ggra5018.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5018.t1
Unique NameGgra5018.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:84053..85129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM269CT
Preferred nameFDPS
PFAMspolyprenyl_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Evalue1.3e-113
EggNOG OGsCOG0142@1|root,KOG0711@2759|Eukaryota
EC2.5.1.1,2.5.1.10,4.4.1.15
Descriptiondimethylallyltranstransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5018Ggra5018Gracilaria gracilis GNS1m malegenetig00000069_pilon 84053..85129 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5018.t1.stop1Ggra5018.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 84053..84055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5018.t1.CDS1Ggra5018.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 84053..85129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5018.t1.exon1Ggra5018.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 84053..85129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5018.t1.start1Ggra5018.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 85127..85129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5018.t1Ggra5018.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 84053..85129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5018.t1 ID=Ggra5018.t1|Name=Ggra5018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MGATPPDTIYVAPAGADKHLFKAMFPDLVDTLIGDLKSSFDLPQASIDYI
HKNLTYNVPHGKLNRGMAVLQCYQAFNPHQKLTEQQQKHAIILGWCVELL
QAFFLVADDIMDDSITRRGQPCFYRIPDIGMNAINDAMILEMMIYRLLRI
HFKQHPQYPNLLELFTDITYTTEMGQLLDLTTSQPADQVLLHKFTEENLT
RIYRYKTSHYTFYLPVALGMRLASVSESALYDTAKDICIRIGYYFQAQDD
FLDAFGDPSVTGKIGTDIEDNTCTWLVVRALERCSEQDRLVLEQNYGKKD
KACSDRVKQLYRKLDLPTVFADFEQSSYDQLSKRIADVNDMPTGAFEFFL
TKLYKRKR*
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spliced messenger RNA

>Ggra5018.t1 ID=Ggra5018.t1|Name=Ggra5018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000069_pilon:84053..85129- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCACACCTCCTGATACTATCTATGTCGCGCCTGCGGGTGCCGA
CAAGCACCTGTTCAAGGCCATGTTCCCCGATCTTGTCGATACGCTCATTG
GCGATTTGAAGTCGTCGTTCGATCTACCGCAAGCTTCCATTGATTACATT
CACAAAAACCTCACCTACAACGTGCCGCACGGCAAGTTGAACCGCGGAAT
GGCCGTTCTTCAGTGCTACCAGGCCTTCAACCCGCATCAAAAGCTCACAG
AACAGCAGCAGAAACACGCCATCATCCTGGGCTGGTGCGTCGAGCTCCTG
CAGGCGTTTTTCCTCGTCGCGGATGACATCATGGACGACAGCATTACCAG
AAGGGGGCAGCCTTGCTTCTATCGCATCCCTGACATTGGAATGAACGCCA
TCAACGACGCCATGATCCTCGAAATGATGATCTATCGCCTGCTGAGAATT
CATTTCAAACAACACCCGCAATACCCCAATCTGCTCGAACTCTTCACTGA
CATCACGTACACCACGGAGATGGGCCAACTTCTCGACCTCACCACCTCTC
AACCGGCCGATCAAGTGCTTCTTCACAAGTTCACCGAGGAAAATCTCACC
AGAATATACCGCTACAAGACCTCGCATTACACCTTTTATCTCCCCGTCGC
GCTTGGAATGCGCCTTGCATCCGTCTCCGAAAGCGCCTTGTACGACACTG
CAAAGGACATCTGCATAAGAATCGGCTATTACTTCCAGGCGCAGGACGAC
TTTCTCGATGCGTTTGGCGACCCTTCTGTCACCGGCAAGATTGGCACCGA
TATCGAGGATAATACCTGCACCTGGTTGGTTGTCAGGGCGCTTGAACGCT
GTTCCGAGCAAGATCGACTCGTGCTGGAACAAAACTATGGCAAGAAGGAT
AAGGCTTGCTCAGATCGTGTGAAGCAACTATACCGCAAACTGGATCTCCC
GACCGTGTTTGCCGACTTTGAGCAGAGCAGTTATGACCAACTTTCTAAAC
GCATTGCTGACGTTAACGATATGCCTACAGGAGCTTTTGAATTCTTCCTG
ACTAAACTGTACAAACGGAAGCGATGA
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protein sequence of Ggra5018.t1

>Ggra5018.t1 ID=Ggra5018.t1|Name=Ggra5018.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MGATPPDTIYVAPAGADKHLFKAMFPDLVDTLIGDLKSSFDLPQASIDYI
HKNLTYNVPHGKLNRGMAVLQCYQAFNPHQKLTEQQQKHAIILGWCVELL
QAFFLVADDIMDDSITRRGQPCFYRIPDIGMNAINDAMILEMMIYRLLRI
HFKQHPQYPNLLELFTDITYTTEMGQLLDLTTSQPADQVLLHKFTEENLT
RIYRYKTSHYTFYLPVALGMRLASVSESALYDTAKDICIRIGYYFQAQDD
FLDAFGDPSVTGKIGTDIEDNTCTWLVVRALERCSEQDRLVLEQNYGKKD
KACSDRVKQLYRKLDLPTVFADFEQSSYDQLSKRIADVNDMPTGAFEFFL
TKLYKRKR*
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mRNA from alignment at tig00000069_pilon:84053..85129-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5018.t1 ID=Ggra5018.t1|Name=Ggra5018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000069_pilon:84053..85129- (Gracilaria gracilis GNS1m male)
ATGGGCGCCACACCTCCTGATACTATCTATGTCGCGCCTGCGGGTGCCGA
CAAGCACCTGTTCAAGGCCATGTTCCCCGATCTTGTCGATACGCTCATTG
GCGATTTGAAGTCGTCGTTCGATCTACCGCAAGCTTCCATTGATTACATT
CACAAAAACCTCACCTACAACGTGCCGCACGGCAAGTTGAACCGCGGAAT
GGCCGTTCTTCAGTGCTACCAGGCCTTCAACCCGCATCAAAAGCTCACAG
AACAGCAGCAGAAACACGCCATCATCCTGGGCTGGTGCGTCGAGCTCCTG
CAGGCGTTTTTCCTCGTCGCGGATGACATCATGGACGACAGCATTACCAG
AAGGGGGCAGCCTTGCTTCTATCGCATCCCTGACATTGGAATGAACGCCA
TCAACGACGCCATGATCCTCGAAATGATGATCTATCGCCTGCTGAGAATT
CATTTCAAACAACACCCGCAATACCCCAATCTGCTCGAACTCTTCACTGA
CATCACGTACACCACGGAGATGGGCCAACTTCTCGACCTCACCACCTCTC
AACCGGCCGATCAAGTGCTTCTTCACAAGTTCACCGAGGAAAATCTCACC
AGAATATACCGCTACAAGACCTCGCATTACACCTTTTATCTCCCCGTCGC
GCTTGGAATGCGCCTTGCATCCGTCTCCGAAAGCGCCTTGTACGACACTG
CAAAGGACATCTGCATAAGAATCGGCTATTACTTCCAGGCGCAGGACGAC
TTTCTCGATGCGTTTGGCGACCCTTCTGTCACCGGCAAGATTGGCACCGA
TATCGAGGATAATACCTGCACCTGGTTGGTTGTCAGGGCGCTTGAACGCT
GTTCCGAGCAAGATCGACTCGTGCTGGAACAAAACTATGGCAAGAAGGAT
AAGGCTTGCTCAGATCGTGTGAAGCAACTATACCGCAAACTGGATCTCCC
GACCGTGTTTGCCGACTTTGAGCAGAGCAGTTATGACCAACTTTCTAAAC
GCATTGCTGACGTTAACGATATGCCTACAGGAGCTTTTGAATTCTTCCTG
ACTAAACTGTACAAACGGAAGCGATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:84053..85129-

>Ggra5018.t1 ID=Ggra5018.t1|Name=Ggra5018.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000069_pilon:84053..85129- (Gracilaria gracilis GNS1m male)
ATGGGCGCCACACCTCCTGATACTATCTATGTCGCGCCTGCGGGTGCCGA
CAAGCACCTGTTCAAGGCCATGTTCCCCGATCTTGTCGATACGCTCATTG
GCGATTTGAAGTCGTCGTTCGATCTACCGCAAGCTTCCATTGATTACATT
CACAAAAACCTCACCTACAACGTGCCGCACGGCAAGTTGAACCGCGGAAT
GGCCGTTCTTCAGTGCTACCAGGCCTTCAACCCGCATCAAAAGCTCACAG
AACAGCAGCAGAAACACGCCATCATCCTGGGCTGGTGCGTCGAGCTCCTG
CAGGCGTTTTTCCTCGTCGCGGATGACATCATGGACGACAGCATTACCAG
AAGGGGGCAGCCTTGCTTCTATCGCATCCCTGACATTGGAATGAACGCCA
TCAACGACGCCATGATCCTCGAAATGATGATCTATCGCCTGCTGAGAATT
CATTTCAAACAACACCCGCAATACCCCAATCTGCTCGAACTCTTCACTGA
CATCACGTACACCACGGAGATGGGCCAACTTCTCGACCTCACCACCTCTC
AACCGGCCGATCAAGTGCTTCTTCACAAGTTCACCGAGGAAAATCTCACC
AGAATATACCGCTACAAGACCTCGCATTACACCTTTTATCTCCCCGTCGC
GCTTGGAATGCGCCTTGCATCCGTCTCCGAAAGCGCCTTGTACGACACTG
CAAAGGACATCTGCATAAGAATCGGCTATTACTTCCAGGCGCAGGACGAC
TTTCTCGATGCGTTTGGCGACCCTTCTGTCACCGGCAAGATTGGCACCGA
TATCGAGGATAATACCTGCACCTGGTTGGTTGTCAGGGCGCTTGAACGCT
GTTCCGAGCAAGATCGACTCGTGCTGGAACAAAACTATGGCAAGAAGGAT
AAGGCTTGCTCAGATCGTGTGAAGCAACTATACCGCAAACTGGATCTCCC
GACCGTGTTTGCCGACTTTGAGCAGAGCAGTTATGACCAACTTTCTAAAC
GCATTGCTGACGTTAACGATATGCCTACAGGAGCTTTTGAATTCTTCCTG
ACTAAACTGTACAAACGGAAGCGATGA
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