Ggra5017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5017.t1
Unique NameGgra5017.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:82189..83229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1210884.HG799469_gene14006
Preferred namesigA
PFAMsSigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Max annot lvl203682|Planctomycetes
KEGG koko:K03086
Evalue7.82e-27
EggNOG OGsCOG0568@1|root,COG0568@2|Bacteria,2IXI3@203682|Planctomycetes
DescriptionSigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5017Ggra5017Gracilaria gracilis GNS1m malegenetig00000069_pilon 82189..83229 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5017.t1.start1Ggra5017.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 82189..82191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5017.t1.CDS1Ggra5017.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 82189..83229 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5017.t1.exon1Ggra5017.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 82189..83229 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5017.t1.stop1Ggra5017.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 83227..83229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5017.t1Ggra5017.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 82189..83229 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5017.t1 ID=Ggra5017.t1|Name=Ggra5017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MSSVLPLFVPLAVAEPPARRRRPSTSRRPRVASPNHPPPPVPSQTLSANL
PRLHAARKHLRRKSRTEPLNQAVILLANRHNPLSSAHWHHIVGQRNQLVV
KWLWLVGAVARKSHQIFISAFPEAAPVLSFSDLVQEGVFGLITAVERWNA
SKGPFDAYAFYSVKYAILRAIQNQARPIRLPVHVLNKLSKIRSVRHQLQL
ADGNEVSLSEVARVAGVDRKVAKLYLERSRALLSIDVPMRHQSSKPDAPP
LRDFLVDHSVDVSRQVDRMCTREAVADLIQSSQLEDLERSVLCLKYGIGD
GIERLRIEVSRILDVRVNTVRRAELSALKKLREVVSDDISKWAELM*
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spliced messenger RNA

>Ggra5017.t1 ID=Ggra5017.t1|Name=Ggra5017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:82189..83229+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCGGTGCTGCCTTTGTTCGTGCCGCTTGCCGTCGCCGAGCCCCC
GGCGAGGAGACGGCGCCCCTCTACCTCACGCAGGCCGCGTGTGGCTTCGC
CAAACCACCCGCCACCACCCGTGCCGTCGCAGACGCTCTCCGCCAACCTG
CCGCGCTTGCATGCCGCCAGAAAGCACTTGCGTCGCAAAAGCCGCACCGA
GCCACTCAACCAGGCGGTCATTTTGCTCGCCAATCGCCATAATCCACTGT
CGTCCGCGCACTGGCATCATATCGTTGGACAGCGCAACCAGCTCGTTGTC
AAGTGGCTGTGGCTGGTTGGTGCCGTAGCTCGCAAGTCGCACCAGATTTT
CATCTCCGCCTTTCCGGAGGCCGCCCCCGTGCTGTCCTTCTCCGACCTTG
TGCAGGAGGGCGTCTTTGGCTTGATCACCGCTGTGGAGCGATGGAACGCC
TCCAAGGGACCTTTTGATGCATACGCCTTCTACTCAGTCAAGTACGCCAT
CTTGAGAGCAATACAGAACCAAGCTAGACCCATTCGCTTGCCTGTTCACG
TGCTCAATAAACTGTCAAAGATCCGTTCGGTGCGCCATCAGTTGCAGCTT
GCGGACGGGAACGAGGTCAGCCTTTCCGAAGTGGCCCGAGTCGCCGGCGT
CGATCGCAAAGTCGCCAAGTTGTATCTCGAACGAAGTCGAGCCTTGCTGA
GCATCGATGTCCCCATGCGCCACCAGTCGTCAAAGCCTGACGCCCCTCCC
CTTCGTGACTTTCTTGTTGACCATTCCGTCGACGTTTCCCGCCAGGTTGA
CCGAATGTGCACCAGAGAAGCCGTTGCTGATCTCATTCAAAGCTCGCAAC
TTGAGGACCTTGAGCGTAGTGTGCTGTGCTTGAAGTACGGCATTGGTGAT
GGTATTGAGAGACTGCGCATTGAGGTCAGTCGTATTCTCGACGTGCGTGT
CAACACTGTTAGGCGCGCTGAGCTCAGCGCTCTTAAAAAGTTGCGCGAAG
TTGTTTCGGATGATATATCCAAATGGGCTGAGCTCATGTGA
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protein sequence of Ggra5017.t1

>Ggra5017.t1 ID=Ggra5017.t1|Name=Ggra5017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MSSVLPLFVPLAVAEPPARRRRPSTSRRPRVASPNHPPPPVPSQTLSANL
PRLHAARKHLRRKSRTEPLNQAVILLANRHNPLSSAHWHHIVGQRNQLVV
KWLWLVGAVARKSHQIFISAFPEAAPVLSFSDLVQEGVFGLITAVERWNA
SKGPFDAYAFYSVKYAILRAIQNQARPIRLPVHVLNKLSKIRSVRHQLQL
ADGNEVSLSEVARVAGVDRKVAKLYLERSRALLSIDVPMRHQSSKPDAPP
LRDFLVDHSVDVSRQVDRMCTREAVADLIQSSQLEDLERSVLCLKYGIGD
GIERLRIEVSRILDVRVNTVRRAELSALKKLREVVSDDISKWAELM*
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mRNA from alignment at tig00000069_pilon:82189..83229+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5017.t1 ID=Ggra5017.t1|Name=Ggra5017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:82189..83229+ (Gracilaria gracilis GNS1m male)
ATGAGCTCGGTGCTGCCTTTGTTCGTGCCGCTTGCCGTCGCCGAGCCCCC
GGCGAGGAGACGGCGCCCCTCTACCTCACGCAGGCCGCGTGTGGCTTCGC
CAAACCACCCGCCACCACCCGTGCCGTCGCAGACGCTCTCCGCCAACCTG
CCGCGCTTGCATGCCGCCAGAAAGCACTTGCGTCGCAAAAGCCGCACCGA
GCCACTCAACCAGGCGGTCATTTTGCTCGCCAATCGCCATAATCCACTGT
CGTCCGCGCACTGGCATCATATCGTTGGACAGCGCAACCAGCTCGTTGTC
AAGTGGCTGTGGCTGGTTGGTGCCGTAGCTCGCAAGTCGCACCAGATTTT
CATCTCCGCCTTTCCGGAGGCCGCCCCCGTGCTGTCCTTCTCCGACCTTG
TGCAGGAGGGCGTCTTTGGCTTGATCACCGCTGTGGAGCGATGGAACGCC
TCCAAGGGACCTTTTGATGCATACGCCTTCTACTCAGTCAAGTACGCCAT
CTTGAGAGCAATACAGAACCAAGCTAGACCCATTCGCTTGCCTGTTCACG
TGCTCAATAAACTGTCAAAGATCCGTTCGGTGCGCCATCAGTTGCAGCTT
GCGGACGGGAACGAGGTCAGCCTTTCCGAAGTGGCCCGAGTCGCCGGCGT
CGATCGCAAAGTCGCCAAGTTGTATCTCGAACGAAGTCGAGCCTTGCTGA
GCATCGATGTCCCCATGCGCCACCAGTCGTCAAAGCCTGACGCCCCTCCC
CTTCGTGACTTTCTTGTTGACCATTCCGTCGACGTTTCCCGCCAGGTTGA
CCGAATGTGCACCAGAGAAGCCGTTGCTGATCTCATTCAAAGCTCGCAAC
TTGAGGACCTTGAGCGTAGTGTGCTGTGCTTGAAGTACGGCATTGGTGAT
GGTATTGAGAGACTGCGCATTGAGGTCAGTCGTATTCTCGACGTGCGTGT
CAACACTGTTAGGCGCGCTGAGCTCAGCGCTCTTAAAAAGTTGCGCGAAG
TTGTTTCGGATGATATATCCAAATGGGCTGAGCTCATGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:82189..83229+

>Ggra5017.t1 ID=Ggra5017.t1|Name=Ggra5017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:82189..83229+ (Gracilaria gracilis GNS1m male)
ATGAGCTCGGTGCTGCCTTTGTTCGTGCCGCTTGCCGTCGCCGAGCCCCC
GGCGAGGAGACGGCGCCCCTCTACCTCACGCAGGCCGCGTGTGGCTTCGC
CAAACCACCCGCCACCACCCGTGCCGTCGCAGACGCTCTCCGCCAACCTG
CCGCGCTTGCATGCCGCCAGAAAGCACTTGCGTCGCAAAAGCCGCACCGA
GCCACTCAACCAGGCGGTCATTTTGCTCGCCAATCGCCATAATCCACTGT
CGTCCGCGCACTGGCATCATATCGTTGGACAGCGCAACCAGCTCGTTGTC
AAGTGGCTGTGGCTGGTTGGTGCCGTAGCTCGCAAGTCGCACCAGATTTT
CATCTCCGCCTTTCCGGAGGCCGCCCCCGTGCTGTCCTTCTCCGACCTTG
TGCAGGAGGGCGTCTTTGGCTTGATCACCGCTGTGGAGCGATGGAACGCC
TCCAAGGGACCTTTTGATGCATACGCCTTCTACTCAGTCAAGTACGCCAT
CTTGAGAGCAATACAGAACCAAGCTAGACCCATTCGCTTGCCTGTTCACG
TGCTCAATAAACTGTCAAAGATCCGTTCGGTGCGCCATCAGTTGCAGCTT
GCGGACGGGAACGAGGTCAGCCTTTCCGAAGTGGCCCGAGTCGCCGGCGT
CGATCGCAAAGTCGCCAAGTTGTATCTCGAACGAAGTCGAGCCTTGCTGA
GCATCGATGTCCCCATGCGCCACCAGTCGTCAAAGCCTGACGCCCCTCCC
CTTCGTGACTTTCTTGTTGACCATTCCGTCGACGTTTCCCGCCAGGTTGA
CCGAATGTGCACCAGAGAAGCCGTTGCTGATCTCATTCAAAGCTCGCAAC
TTGAGGACCTTGAGCGTAGTGTGCTGTGCTTGAAGTACGGCATTGGTGAT
GGTATTGAGAGACTGCGCATTGAGGTCAGTCGTATTCTCGACGTGCGTGT
CAACACTGTTAGGCGCGCTGAGCTCAGCGCTCTTAAAAAGTTGCGCGAAG
TTGTTTCGGATGATATATCCAAATGGGCTGAGCTCATGTGA
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